Rmu_sc0001857.1_g000011

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001857.1
OG0000119
Physical Location & Seq
Forward (+)
53363 .. 53788
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001857.1_g000011.1.cds

Sequence Viewer

Length: 426 bp
atgatgtgtgactatctaaagccagtgatgcatgacgagggcgacgaggtttttcaaatggaagctccattacataggatgctactcattacagaaggcacattattgacctacagaaatgctgcaactgaaaacgcaaaaacgggtagtatttcaagttccccgtcagtgggcaaccttggcaaaggtgacttttacggcgccgaagaactgatcgagtgggtaacacaaaagaaggatttagacaagcttcccgcctcttccttcaatgtgaaatgcaattcaaaagtagaaggctttgttctcaaggccaagcagttgagaagtgtagtttccaaaaacgaaaaccggtggaaaaatggcattagcgagtcagaatttgtacctctccatggcggctggtctcctggaggcagtgctttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

141

Amino Acids

15.52

Weight (kDa)

5.92

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 200
AciI CCGC 2 cut(s) 255, 396
AcsI RAATTY 1 cut(s) 377
AcyI GRCGYC 1 cut(s) 201
AfaI GTAC 1 cut(s) 384
AfiI CCNNNNNNNGG 3 cut(s) 169, 170, 392
AgeI ACCGGT 1 cut(s) 348
AgsI TTSAA 4 cut(s) 56, 156, 268, 285
AjnI CCWGG 1 cut(s) 406
AluBI AGCT 2 cut(s) 65, 250
AluI AGCT 2 cut(s) 65, 250
Alw26I GTCTC 1 cut(s) 408
AoxI GGCC 1 cut(s) 309
ApeKI GCWGC 1 cut(s) 122
ApoI RAATTY 1 cut(s) 377
AsiGI ACCGGT 1 cut(s) 348
AspLEI GCGC 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 200
BanI GGYRCC 1 cut(s) 200
BarI GAAGNNNNNNTAC 2 cut(s) 54, 86
BbvI GCAGC 1 cut(s) 109
BceAI ACGGC 1 cut(s) 214
BciT130I CCWGG 1 cut(s) 408
BcoDI GTCTC 1 cut(s) 408
BfmI CTRYAG 1 cut(s) 112
BfoI RGCGCY 1 cut(s) 204
BisI GCNGC 2 cut(s) 123, 397
BlsI GCNGC 2 cut(s) 124, 398
Bme1390I CCNGG 1 cut(s) 408
BmiI GGNNCC 1 cut(s) 202
BmrFI CCNGG 1 cut(s) 408
BmsI GCATC 2 cut(s) 18, 69
BpuEI CTTGAG 1 cut(s) 290
BsaHI GRCGYC 1 cut(s) 201
BsaI GGTCTC 1 cut(s) 408
BsaJI CCNNGG 2 cut(s) 178, 391
BsaWI WCCGGW 1 cut(s) 348
Bsc4I CCNNNNNNNGG 3 cut(s) 169, 170, 392
Bse118I RCCGGY 1 cut(s) 348
Bse1I ACTGG 1 cut(s) 23
BseBI CCWGG 1 cut(s) 408
BseDI CCNNGG 2 cut(s) 178, 391
BseGI GGATG 1 cut(s) 84
BseLI CCNNNNNNNGG 3 cut(s) 169, 170, 392
BseNI ACTGG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 109
BshFI GGCC 1 cut(s) 311
BshNI GGYRCC 1 cut(s) 200
BshTI ACCGGT 1 cut(s) 348
BsiSI CCGG 1 cut(s) 349
BslI CCNNNNNNNGG 3 cut(s) 169, 170, 392
BsmAI GTCTC 1 cut(s) 408
BsnI GGCC 1 cut(s) 311
Bso31I GGTCTC 1 cut(s) 408
Bsp143I GATC 1 cut(s) 213
Bsp19I CCATGG 1 cut(s) 391
BspACI CCGC 2 cut(s) 255, 396
BspANI GGCC 1 cut(s) 311
BspLI GGNNCC 1 cut(s) 202
BspT107I GGYRCC 1 cut(s) 200
BspTNI GGTCTC 1 cut(s) 408
BsrFI RCCGGY 1 cut(s) 348
BsrI ACTGG 1 cut(s) 23
BssAI RCCGGY 1 cut(s) 348
BssECI CCNNGG 2 cut(s) 178, 391
BssMI GATC 1 cut(s) 213
BssNI GRCGYC 1 cut(s) 201
BssT1I CCWWGG 2 cut(s) 178, 391
Bst2UI CCWGG 1 cut(s) 408
Bst6I CTCTTC 1 cut(s) 265
BstACI GRCGYC 1 cut(s) 201
BstDSI CCRYGG 1 cut(s) 391
BstF5I GGATG 1 cut(s) 84
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 1 cut(s) 216
BstMAI GTCTC 1 cut(s) 408
BstMBI GATC 1 cut(s) 213
BstMWI GCNNNNNNNGC 2 cut(s) 28, 180
BstNI CCWGG 1 cut(s) 408
BstSCI CCNGG 1 cut(s) 406
BstSFI CTRYAG 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 109
BsuRI GGCC 1 cut(s) 311
BtgI CCRYGG 1 cut(s) 391
BtsCI GGATG 1 cut(s) 84
BtsI GCAGTG 1 cut(s) 421
BtsIMutI CAGTG 3 cut(s) 30, 174, 421
CfoI GCGC 1 cut(s) 203
Cfr10I RCCGGY 1 cut(s) 348
Csp6I GTAC 1 cut(s) 383
CspAI ACCGGT 1 cut(s) 348
CviAII CATG 2 cut(s) 32, 392
CviJI RGCY 6 cut(s) 22, 65, 250, 297, 311, 399
CviKI_1 RGCY 6 cut(s) 22, 65, 250, 297, 311, 399
CviQI GTAC 1 cut(s) 383
DinI GGCGCC 1 cut(s) 202
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 265
EarI CTCTTC 1 cut(s) 265
Eco130I CCWWGG 2 cut(s) 178, 391
Eco31I GGTCTC 1 cut(s) 408
EcoRII CCWGG 1 cut(s) 406
EcoT14I CCWWGG 2 cut(s) 178, 391
EcoT22I ATGCAT 1 cut(s) 33
EgeI GGCGCC 1 cut(s) 202
EheI GGCGCC 1 cut(s) 202
ErhI CCWWGG 2 cut(s) 178, 391
FaeI CATG 2 cut(s) 35, 395
FaiI YATR 3 cut(s) 33, 75, 393
FatI CATG 2 cut(s) 31, 391
FauI CCCGC 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 123, 397
FokI GGATG 1 cut(s) 91
Fsp4HI GCNGC 2 cut(s) 123, 397
GlaI GCGC 1 cut(s) 202
GluI GCNGC 2 cut(s) 123, 397
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 1 cut(s) 311
HapII CCGG 1 cut(s) 349
HhaI GCGC 1 cut(s) 203
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 2 cut(s) 35, 395
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 1 cut(s) 371
HpaII CCGG 1 cut(s) 349
HphI GGTGA 1 cut(s) 200
Hpy188I TCNGA 1 cut(s) 376
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 4 cut(s) 89, 229, 274, 287
HpyCH4V TGCA 3 cut(s) 31, 125, 279
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 180
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 2 cut(s) 35, 395
HspAI GCGC 1 cut(s) 201
KasI GGCGCC 1 cut(s) 200
Kzo9I GATC 1 cut(s) 213
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 5 cut(s) 36, 362, 385, 393, 420
Lsp1109I GCAGC 1 cut(s) 109
LweI GCATC 2 cut(s) 18, 69
MaeIII GTNAC 3 cut(s) 8, 188, 223
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 2 cut(s) 218, 252
MluCI AATT 2 cut(s) 280, 377
Mly113I GGCGCC 1 cut(s) 201
MlyI GAGTC 1 cut(s) 380
MnlI CCTC 5 cut(s) 31, 40, 268, 396, 404
Mph1103I ATGCAT 1 cut(s) 33
MspI CCGG 1 cut(s) 349
MspR9I CCNGG 1 cut(s) 408
MvaI CCWGG 1 cut(s) 408
MwoI GCNNNNNNNGC 2 cut(s) 28, 180
NarI GGCGCC 1 cut(s) 201
NcoI CCATGG 1 cut(s) 391
NdeII GATC 1 cut(s) 213
NlaIII CATG 2 cut(s) 35, 395
NlaIV GGNNCC 1 cut(s) 202
NmuCI GTSAC 2 cut(s) 8, 188
NsiI ATGCAT 1 cut(s) 33
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PfoI TCCNGGA 1 cut(s) 406
PinAI ACCGGT 1 cut(s) 348
PkrI GCNGC 2 cut(s) 124, 398
PleI GAGTC 1 cut(s) 379
PluTI GGCGCC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 379
Psp6I CCWGG 1 cut(s) 406
PspGI CCWGG 1 cut(s) 406
PspN4I GGNNCC 1 cut(s) 202
PsrI GAACNNNNNNTAC 2 cut(s) 142, 174
RsaI GTAC 1 cut(s) 384
RsaNI GTAC 1 cut(s) 383
SatI GCNGC 2 cut(s) 123, 397
Sau3AI GATC 1 cut(s) 213
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 1 cut(s) 408
SetI ASST 7 cut(s) 51, 67, 113, 180, 190, 252, 388
SfaNI GCATC 2 cut(s) 18, 69
SfcI CTRYAG 1 cut(s) 112
SfoI GGCGCC 1 cut(s) 202
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 2 cut(s) 280, 377
SsiI CCGC 2 cut(s) 255, 396
SspDI GGCGCC 1 cut(s) 200
StyD4I CCNGG 1 cut(s) 406
StyI CCWWGG 2 cut(s) 178, 391
TaqI TCGA 1 cut(s) 216
TasI AATT 2 cut(s) 280, 377
TauI GCSGC 1 cut(s) 399
TscAI CASTG 3 cut(s) 30, 174, 421
TseFI GTSAC 2 cut(s) 8, 188
TseI GCWGC 1 cut(s) 122
Tsp45I GTSAC 2 cut(s) 8, 188
TspRI CASTG 3 cut(s) 30, 174, 421
XapI RAATTY 1 cut(s) 377
Zsp2I ATGCAT 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.