RchiOBHm_Chr4g0409511

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000119
Physical Location & Seq
Forward (+)
32934456 .. 32934847
392 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38050

Sequence Viewer

Length: 297 bp
ATGAAAAGTAATGGAAATAAACAGCTTCTGTTGAAAAGTAATGGAAATAAACAGCTTTCCAGAAGTTGGTTCCTTAAGAAATTAGCTCGAAAGATGCCATGGCACTCGATTACAATTGATATTCTTGCGGTTCTCCCTATCCCACAAGTGCTAATGACTGTTTTCTTCAAAATGAGAAGCTCCAAATATCTTGGCCGAAGAAAGATTATTGATGTCTTTCTTCTTGCCCAATATTTACCAAGAATTTATCGTATGCACCATTCTTCACAGAAATTCAAGCAAAGTAAGGGAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

98

Amino Acids

11.56

Weight (kDa)

11.45

Isoelectric Point (pI)

58.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 66
AciI CCGC 1 cut(s) 128
AcoI YGGCCR 1 cut(s) 193
AcsI RAATTY 2 cut(s) 243, 272
AfiI CCNNNNNNNGG 1 cut(s) 66
AflII CTTAAG 1 cut(s) 74
AgsI TTSAA 3 cut(s) 34, 169, 277
AluBI AGCT 4 cut(s) 25, 55, 86, 180
AluI AGCT 4 cut(s) 25, 55, 86, 180
AlwNI CAGNNNCTG 1 cut(s) 28
AoxI GGCC 1 cut(s) 193
ApoI RAATTY 2 cut(s) 243, 272
BfrI CTTAAG 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 71
BmsI GCATC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 98
Bsc4I CCNNNNNNNGG 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 98
BseLI CCNNNNNNNGG 1 cut(s) 66
BshFI GGCC 1 cut(s) 195
BslI CCNNNNNNNGG 1 cut(s) 66
BsnI GGCC 1 cut(s) 195
Bsp19I CCATGG 1 cut(s) 98
BspACI CCGC 1 cut(s) 128
BspANI GGCC 1 cut(s) 195
BspLI GGNNCC 1 cut(s) 71
BspTI CTTAAG 1 cut(s) 74
BssECI CCNNGG 1 cut(s) 98
BssT1I CCWWGG 1 cut(s) 98
Bst4CI ACNGT 1 cut(s) 160
BstAFI CTTAAG 1 cut(s) 74
BstDSI CCRYGG 1 cut(s) 98
BsuRI GGCC 1 cut(s) 195
BtgI CCRYGG 1 cut(s) 98
CaiI CAGNNNCTG 1 cut(s) 28
CviAII CATG 1 cut(s) 99
CviJI RGCY 5 cut(s) 25, 55, 86, 180, 195
CviKI_1 RGCY 5 cut(s) 25, 55, 86, 180, 195
EaeI YGGCCR 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 98
EcoT14I CCWWGG 1 cut(s) 98
ErhI CCWWGG 1 cut(s) 98
FaeI CATG 1 cut(s) 102
FaiI YATR 3 cut(s) 100, 254, 295
FatI CATG 1 cut(s) 98
HaeIII GGCC 1 cut(s) 195
Hin1II CATG 1 cut(s) 102
Hpy188III TCNNGA 1 cut(s) 60
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 256
Hsp92II CATG 1 cut(s) 102
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 1 cut(s) 73
LweI GCATC 1 cut(s) 84
MboII GAAGA 4 cut(s) 157, 210, 212, 255
MfeI CAATTG 1 cut(s) 114
MluCI AATT 4 cut(s) 80, 114, 243, 272
MseI TTAA 1 cut(s) 75
MspCI CTTAAG 1 cut(s) 74
MunI CAATTG 1 cut(s) 114
NcoI CCATGG 1 cut(s) 98
NlaIII CATG 1 cut(s) 102
NlaIV GGNNCC 1 cut(s) 71
PflMI CCANNNNNTGG 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 71
PstNI CAGNNNCTG 1 cut(s) 28
SaqAI TTAA 1 cut(s) 75
SetI ASST 4 cut(s) 27, 57, 88, 182
SfaNI GCATC 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 4 cut(s) 80, 114, 243, 272
SsiI CCGC 1 cut(s) 128
SspI AATATT 1 cut(s) 233
StyI CCWWGG 1 cut(s) 98
TaaI ACNGT 1 cut(s) 160
TaqI TCGA 2 cut(s) 88, 107
TasI AATT 4 cut(s) 80, 114, 243, 272
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 66
Vha464I CTTAAG 1 cut(s) 74
XapI RAATTY 2 cut(s) 243, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.