Rh1BG407700

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000119
Physical Location & Seq
Reverse (-)
53004123 .. 53007967
3845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG407700.1

Sequence Viewer

Length: 768 bp
ATGTCTAAACATAAGGTACCCAACTACGATGAGAGCATCATCGATTTGAGCGTTACACAAGGAATAGGTTATGATTTCAACTGTCCTGAGGCTCTATCGCAACATCCAATACCGAAACGTGAACCTGAAGAAACTCAAGCAAGCAACAAAGGGAAAAGGCCAACAGTTGCGGAAGTTCTTTCAGTTTTGAACCCATGGTGGAATACGATACTATTAACTTCATGTTTGATTGCAGTTTTATTTGATCCTTTGTTCTTTTACATTCCATACATCAATGAGAAAGACAAGTGCATGGGAATCGATAAACAAGTGCGGACTGCAGCTCTGGTTTTCCGATCAGTCACGGACATCACTTTCCTAGTGCATATCATATACCAACTTCGTGAAGCTATCAAATTTGCAGCCTCAAAGGTTCCAAGGGATACAAATTCAAAAAATTGGGAATGGGAATCGGTATCCCGAGCTCAGATGATTAAGTTTGCGAAGGAATTTTCTCGCAAATTGTCATGGCGCTCTTTCCTAACTGATGTTTTCGCTATTTTCCCCATGCCACAACTGCTAATAGTAGGGTTCTTTTTCGAAATGGGAGGCAGTAACTATTTGGAGAGAAGAAAGATTCTGAGTGGTTTTGTGCTAATCCAATATGTGCCAAGAATTTATCGAATTTATCTATCGTATTCCGCGGTGACCTATATAGAAAGGGCATATTATCCTATTATTATCAACAGTGGGTTGACACTGAATGGACATGTTATCGTAAGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

255

Amino Acids

29.43

Weight (kDa)

9.12

Isoelectric Point (pI)

39.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 16
AccB1I GGYRCC 1 cut(s) 16
AccII CGCG 1 cut(s) 683
AciI CCGC 4 cut(s) 170, 313, 681, 683
AclWI GGATC 1 cut(s) 239
AcsI RAATTY 5 cut(s) 395, 427, 488, 654, 663
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 1 cut(s) 18
AflIII ACRYGT 1 cut(s) 748
AgsI TTSAA 3 cut(s) 79, 190, 432
AluBI AGCT 3 cut(s) 323, 389, 464
AluI AGCT 3 cut(s) 323, 389, 464
Alw21I GWGCWC 1 cut(s) 466
AlwI GGATC 1 cut(s) 239
Ama87I CYCGRG 1 cut(s) 459
AoxI GGCC 1 cut(s) 158
ApeKI GCWGC 2 cut(s) 320, 401
ApoI RAATTY 5 cut(s) 395, 427, 488, 654, 663
Asp718I GGTACC 1 cut(s) 16
AspLEI GCGC 1 cut(s) 513
AsuHPI GGTGA 1 cut(s) 697
AsuII TTCGAA 1 cut(s) 579
AvaI CYCGRG 1 cut(s) 459
AxyI CCTNAGG 1 cut(s) 87
BanI GGYRCC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 466
Bbv12I GWGCWC 1 cut(s) 466
BbvI GCAGC 2 cut(s) 332, 413
BcgI CGANNNNNNTGC 2 cut(s) 280, 314
BciVI GTATCC 2 cut(s) 415, 466
BfaI CTAG 1 cut(s) 359
BfmI CTRYAG 1 cut(s) 318
BfoI RGCGCY 1 cut(s) 514
BfuI GTATCC 2 cut(s) 415, 466
BisI GCNGC 2 cut(s) 321, 402
BlsI GCNGC 2 cut(s) 322, 403
BmeT110I CYCGRG 1 cut(s) 459
BmiI GGNNCC 2 cut(s) 18, 414
BmsI GCATC 1 cut(s) 45
Bpu14I TTCGAA 1 cut(s) 579
BpuEI CTTGAG 1 cut(s) 120
Bsa29I ATCGAT 2 cut(s) 42, 300
BsaJI CCNNGG 3 cut(s) 194, 416, 681
Bse21I CCTNAGG 1 cut(s) 87
BseCI ATCGAT 2 cut(s) 42, 300
BseDI CCNNGG 3 cut(s) 194, 416, 681
BseGI GGATG 1 cut(s) 103
BseMII CTCAG 3 cut(s) 78, 479, 611
BseXI GCAGC 2 cut(s) 332, 413
Bsh1236I CGCG 1 cut(s) 683
BshFI GGCC 1 cut(s) 160
BshNI GGYRCC 1 cut(s) 16
BshVI ATCGAT 2 cut(s) 42, 300
BsiHKAI GWGCWC 1 cut(s) 466
BsiHKCI CYCGRG 1 cut(s) 459
BsnI GGCC 1 cut(s) 160
BsoBI CYCGRG 1 cut(s) 459
Bsp119I TTCGAA 1 cut(s) 579
Bsp1286I GDGCHC 1 cut(s) 466
Bsp143I GATC 2 cut(s) 244, 335
Bsp19I CCATGG 1 cut(s) 194
BspACI CCGC 4 cut(s) 170, 313, 681, 683
BspANI GGCC 1 cut(s) 160
BspCNI CTCAG 3 cut(s) 79, 478, 612
BspDI ATCGAT 2 cut(s) 42, 300
BspFNI CGCG 1 cut(s) 683
BspLI GGNNCC 2 cut(s) 18, 414
BspMAI CTGCAG 1 cut(s) 322
BspPI GGATC 1 cut(s) 239
BspT104I TTCGAA 1 cut(s) 579
BspT107I GGYRCC 1 cut(s) 16
BssECI CCNNGG 3 cut(s) 194, 416, 681
BssMI GATC 2 cut(s) 244, 335
BssT1I CCWWGG 2 cut(s) 194, 416
Bst4CI ACNGT 3 cut(s) 83, 166, 728
BstBI TTCGAA 1 cut(s) 579
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 3 cut(s) 87, 465, 620
BstDSI CCRYGG 2 cut(s) 194, 681
BstEII GGTNACC 1 cut(s) 685
BstF5I GGATG 1 cut(s) 103
BstFNI CGCG 1 cut(s) 683
BstH2I RGCGCY 1 cut(s) 514
BstHHI GCGC 1 cut(s) 513
BstKTI GATC 2 cut(s) 247, 338
BstMBI GATC 2 cut(s) 244, 335
BstMWI GCNNNNNNNGC 1 cut(s) 556
BstNSI RCATGY 1 cut(s) 752
BstPI GGTNACC 1 cut(s) 685
BstSFI CTRYAG 1 cut(s) 318
BstUI CGCG 1 cut(s) 683
BstV1I GCAGC 2 cut(s) 332, 413
Bsu15I ATCGAT 2 cut(s) 42, 300
Bsu36I CCTNAGG 1 cut(s) 87
BsuI GTATCC 2 cut(s) 415, 466
BsuRI GGCC 1 cut(s) 160
BsuTUI ATCGAT 2 cut(s) 42, 300
BtgI CCRYGG 2 cut(s) 194, 681
BtsCI GGATG 1 cut(s) 103
BtsIMutI CAGTG 2 cut(s) 733, 737
Cac8I GCNNGC 1 cut(s) 142
CfoI GCGC 1 cut(s) 513
Cfr42I CCGCGG 1 cut(s) 684
ClaI ATCGAT 2 cut(s) 42, 300
Csp6I GTAC 1 cut(s) 17
CviAII CATG 6 cut(s) 195, 222, 292, 507, 547, 749
CviJI RGCY 6 cut(s) 92, 160, 323, 389, 404, 464
CviKI_1 RGCY 6 cut(s) 92, 160, 323, 389, 404, 464
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 3 cut(s) 87, 465, 620
DpnI GATC 2 cut(s) 246, 337
DpnII GATC 2 cut(s) 244, 335
Ecl136II GAGCTC 1 cut(s) 464
Eco130I CCWWGG 2 cut(s) 194, 416
Eco24I GRGCYC 1 cut(s) 466
Eco53kI GAGCTC 1 cut(s) 464
Eco57I CTGAAG 1 cut(s) 147
Eco81I CCTNAGG 1 cut(s) 87
Eco88I CYCGRG 1 cut(s) 459
Eco91I GGTNACC 1 cut(s) 685
EcoICRI GAGCTC 1 cut(s) 464
EcoO65I GGTNACC 1 cut(s) 685
EcoT14I CCWWGG 2 cut(s) 194, 416
EcoT38I GRGCYC 1 cut(s) 466
ErhI CCWWGG 2 cut(s) 194, 416
FaeI CATG 6 cut(s) 198, 225, 295, 510, 550, 752
FatI CATG 6 cut(s) 194, 221, 291, 506, 546, 748
Fnu4HI GCNGC 2 cut(s) 321, 402
FokI GGATG 1 cut(s) 90
FriOI GRGCYC 1 cut(s) 466
Fsp4HI GCNGC 2 cut(s) 321, 402
FspBI CTAG 1 cut(s) 359
GlaI GCGC 1 cut(s) 512
GluI GCNGC 2 cut(s) 321, 402
HaeII RGCGCY 1 cut(s) 514
HaeIII GGCC 1 cut(s) 160
HhaI GCGC 1 cut(s) 513
Hin1II CATG 6 cut(s) 198, 225, 295, 510, 550, 752
Hin6I GCGC 1 cut(s) 511
HinP1I GCGC 1 cut(s) 511
HincII GTYRAC 1 cut(s) 735
HindII GTYRAC 1 cut(s) 735
HinfI GANTC 3 cut(s) 297, 449, 616
HphI GGTGA 1 cut(s) 697
Hpy166II GTNNAC 2 cut(s) 122, 735
Hpy188I TCNGA 3 cut(s) 335, 468, 621
Hpy188III TCNNGA 3 cut(s) 86, 383, 459
Hpy8I GTNNAC 2 cut(s) 122, 735
HpyAV CCTTC 1 cut(s) 478
HpyCH4III ACNGT 3 cut(s) 83, 166, 728
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 5 cut(s) 233, 291, 320, 364, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 556
HpyF3I CTNAG 3 cut(s) 87, 465, 620
HpySE526I ACGT 1 cut(s) 118
Hsp92II CATG 6 cut(s) 198, 225, 295, 510, 550, 752
HspAI GCGC 1 cut(s) 511
KpnI GGTACC 1 cut(s) 20
KspI CCGCGG 1 cut(s) 684
Kzo9I GATC 2 cut(s) 244, 335
LpnPI CCDG 3 cut(s) 99, 138, 311
Lsp1109I GCAGC 2 cut(s) 332, 413
LweI GCATC 1 cut(s) 45
MaeI CTAG 1 cut(s) 359
MaeII ACGT 1 cut(s) 118
MaeIII GTNAC 4 cut(s) 52, 340, 593, 685
MalI GATC 2 cut(s) 246, 337
MboI GATC 2 cut(s) 244, 335
MboII GAAGA 2 cut(s) 140, 621
MhlI GDGCHC 1 cut(s) 466
MluCI AATT 7 cut(s) 395, 427, 436, 488, 500, 654, 663
MnlI CCTC 3 cut(s) 82, 415, 581
MseI TTAA 3 cut(s) 215, 474, 766
MspA1I CMGCKG 1 cut(s) 683
MvnI CGCG 1 cut(s) 683
MwoI GCNNNNNNNGC 1 cut(s) 556
NcoI CCATGG 1 cut(s) 194
NdeII GATC 2 cut(s) 244, 335
NlaIII CATG 6 cut(s) 198, 225, 295, 510, 550, 752
NlaIV GGNNCC 2 cut(s) 18, 414
NmuCI GTSAC 2 cut(s) 340, 685
NspI RCATGY 1 cut(s) 752
NspV TTCGAA 1 cut(s) 579
PciI ACATGT 1 cut(s) 748
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PfeI GAWTC 3 cut(s) 297, 449, 616
PkrI GCNGC 2 cut(s) 322, 403
PscI ACATGT 1 cut(s) 748
Psp124BI GAGCTC 1 cut(s) 466
PspEI GGTNACC 1 cut(s) 685
PspN4I GGNNCC 2 cut(s) 18, 414
PstI CTGCAG 1 cut(s) 322
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SacI GAGCTC 1 cut(s) 466
SacII CCGCGG 1 cut(s) 684
SaqAI TTAA 3 cut(s) 215, 474, 766
SatI GCNGC 2 cut(s) 321, 402
Sau3AI GATC 2 cut(s) 244, 335
SduI GDGCHC 1 cut(s) 466
SetI ASST 9 cut(s) 18, 70, 121, 127, 325, 391, 414, 466, 692
SfaNI GCATC 1 cut(s) 45
SfcI CTRYAG 1 cut(s) 318
Sfr303I CCGCGG 1 cut(s) 684
SfuI TTCGAA 1 cut(s) 579
SgrBI CCGCGG 1 cut(s) 684
SmlI CTYRAG 1 cut(s) 135
SmoI CTYRAG 1 cut(s) 135
Sse9I AATT 7 cut(s) 395, 427, 436, 488, 500, 654, 663
SsiI CCGC 4 cut(s) 170, 313, 681, 683
SspMI CTAG 1 cut(s) 359
SstI GAGCTC 1 cut(s) 466
StyI CCWWGG 2 cut(s) 194, 416
TaaI ACNGT 3 cut(s) 83, 166, 728
TaiI ACGT 1 cut(s) 121
TaqI TCGA 4 cut(s) 42, 300, 579, 661
TasI AATT 7 cut(s) 395, 427, 436, 488, 500, 654, 663
TfiI GAWTC 3 cut(s) 297, 449, 616
Tru1I TTAA 3 cut(s) 215, 474, 766
Tru9I TTAA 3 cut(s) 215, 474, 766
TscAI CASTG 2 cut(s) 733, 744
TseFI GTSAC 2 cut(s) 340, 685
TseI GCWGC 2 cut(s) 320, 401
Tsp45I GTSAC 2 cut(s) 340, 685
TspDTI ATGAA 1 cut(s) 210
TspGWI ACGGA 1 cut(s) 359
TspRI CASTG 2 cut(s) 733, 744
XapI RAATTY 5 cut(s) 395, 427, 488, 654, 663
XceI RCATGY 1 cut(s) 752
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.