Rmu_co8450063.1_g000001

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8450063.1
OG0000119
Physical Location & Seq
Reverse (-)
1036 .. 1536
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8450063.1_g000001.1.cds

Sequence Viewer

Length: 501 bp
atgacagctggttacaatactcattctgaatacgaccggagacaatcagaactgaaaaaaaacaaaagcagaattagttcgtggtggactagtttatgggttcgaggtacatggtgggattcgatatttgtagcctcgtgtgttatcgcagtctcactggatccactgttcttttacattcctatcatcgatagggaaaaaaagtgccttcaagcagacagacaattgaggactgtaactctcattttgcgatcagtgatggatatcacttttatagtgcatattatctatcagattcgtgaagctatgatcgctgcagccctcgataagatggctaaaccgaagtcttccgatttctttaaaggacccttctttaaacgtgtcggtgcaatagttgacaatttgtcatggcgctctctcataactgacattctagctgttcttcctatcccacaggtaagatcgataatgaagttaaacatcatattccagccaatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

166

Amino Acids

19.28

Weight (kDa)

9.84

Isoelectric Point (pI)

48.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 155, 168
AfaI GTAC 1 cut(s) 109
AflIII ACRYGT 1 cut(s) 379
AgsI TTSAA 1 cut(s) 212
AhdI GACNNNNNGTC 1 cut(s) 403
AhlI ACTAGT 1 cut(s) 89
AloI GAACNNNNNNTCC 2 cut(s) 152, 184
AluBI AGCT 3 cut(s) 8, 305, 437
AluI AGCT 3 cut(s) 8, 305, 437
Alw26I GTCTC 2 cut(s) 34, 157
AlwI GGATC 2 cut(s) 155, 168
ApeKI GCWGC 2 cut(s) 314, 317
Asp700I GAANNNNTTC 1 cut(s) 76
AspLEI GCGC 1 cut(s) 414
AspS9I GGNCC 1 cut(s) 365
AvaII GGWCC 1 cut(s) 365
BamHI GGATCC 1 cut(s) 160
BauI CACGAG 1 cut(s) 136
BbsI GAAGAC 1 cut(s) 339
BbvI GCAGC 2 cut(s) 301, 329
BccI CCATC 2 cut(s) 253, 325
BcoDI GTCTC 2 cut(s) 34, 157
BcuI ACTAGT 1 cut(s) 89
BfaI CTAG 2 cut(s) 90, 434
BfmI CTRYAG 1 cut(s) 315
BfoI RGCGCY 1 cut(s) 415
BisI GCNGC 2 cut(s) 315, 318
BlsI GCNGC 2 cut(s) 316, 319
Bme18I GGWCC 1 cut(s) 365
BmeRI GACNNNNNGTC 1 cut(s) 403
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 2 cut(s) 162, 367
BpiI GAAGAC 1 cut(s) 339
Bsa29I ATCGAT 2 cut(s) 189, 464
BsaBI GATNNNNATC 1 cut(s) 263
BsaWI WCCGGW 1 cut(s) 36
Bse1I ACTGG 1 cut(s) 162
Bse8I GATNNNNATC 1 cut(s) 263
BseCI ATCGAT 2 cut(s) 189, 464
BseJI GATNNNNATC 1 cut(s) 263
BseNI ACTGG 1 cut(s) 162
BseXI GCAGC 2 cut(s) 301, 329
Bsh1285I CGRYCG 1 cut(s) 37
BshVI ATCGAT 2 cut(s) 189, 464
BsiEI CGRYCG 1 cut(s) 37
BsiSI CCGG 1 cut(s) 37
BsmAI GTCTC 2 cut(s) 34, 157
Bsp143I GATC 4 cut(s) 160, 251, 309, 461
BspDI ATCGAT 2 cut(s) 189, 464
BspLI GGNNCC 2 cut(s) 162, 367
BspMAI CTGCAG 1 cut(s) 319
BspPI GGATC 2 cut(s) 155, 168
BsrI ACTGG 1 cut(s) 162
BssMI GATC 4 cut(s) 160, 251, 309, 461
BssSI CACGAG 1 cut(s) 136
Bst2BI CACGAG 1 cut(s) 136
Bst4CI ACNGT 2 cut(s) 168, 235
BstH2I RGCGCY 1 cut(s) 415
BstHHI GCGC 1 cut(s) 414
BstKTI GATC 4 cut(s) 163, 254, 312, 464
BstMAI GTCTC 2 cut(s) 34, 157
BstMBI GATC 4 cut(s) 160, 251, 309, 461
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstSFI CTRYAG 1 cut(s) 315
BstV1I GCAGC 2 cut(s) 301, 329
BstV2I GAAGAC 1 cut(s) 339
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
Bsu15I ATCGAT 2 cut(s) 189, 464
BsuTUI ATCGAT 2 cut(s) 189, 464
BtsIMutI CAGTG 3 cut(s) 155, 164, 261
CfoI GCGC 1 cut(s) 414
Cfr13I GGNCC 1 cut(s) 365
ClaI ATCGAT 2 cut(s) 189, 464
Csp6I GTAC 1 cut(s) 108
CviAII CATG 2 cut(s) 111, 408
CviJI RGCY 7 cut(s) 8, 134, 305, 320, 335, 437, 493
CviKI_1 RGCY 7 cut(s) 8, 134, 305, 320, 335, 437, 493
CviQI GTAC 1 cut(s) 108
DpnI GATC 4 cut(s) 162, 253, 311, 463
DpnII GATC 4 cut(s) 160, 251, 309, 461
DraI TTTAAA 2 cut(s) 361, 376
DriI GACNNNNNGTC 1 cut(s) 403
Eam1105I GACNNNNNGTC 1 cut(s) 403
Eco32I GATATC 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 365
EcoO109I RGGNCCY 1 cut(s) 365
EcoRV GATATC 1 cut(s) 265
FaeI CATG 2 cut(s) 114, 411
FaiI YATR 8 cut(s) 97, 112, 275, 282, 308, 409, 422, 485
FatI CATG 2 cut(s) 110, 407
Fnu4HI GCNGC 2 cut(s) 315, 318
Fsp4HI GCNGC 2 cut(s) 315, 318
FspBI CTAG 2 cut(s) 90, 434
GlaI GCGC 1 cut(s) 413
GluI GCNGC 2 cut(s) 315, 318
HaeII RGCGCY 1 cut(s) 415
HapII CCGG 1 cut(s) 37
HhaI GCGC 1 cut(s) 414
Hin1II CATG 2 cut(s) 114, 411
Hin6I GCGC 1 cut(s) 412
HinP1I GCGC 1 cut(s) 412
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HinfI GANTC 2 cut(s) 119, 295
HpaII CCGG 1 cut(s) 37
Hpy166II GTNNAC 2 cut(s) 87, 397
Hpy188I TCNGA 4 cut(s) 28, 49, 294, 352
Hpy188III TCNNGA 1 cut(s) 299
Hpy8I GTNNAC 2 cut(s) 87, 397
HpyAV CCTTC 2 cut(s) 218, 379
HpyCH4III ACNGT 2 cut(s) 168, 235
HpyCH4IV ACGT 1 cut(s) 379
HpyCH4V TGCA 3 cut(s) 280, 317, 389
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpySE526I ACGT 1 cut(s) 379
Hsp92II CATG 2 cut(s) 114, 411
HspAI GCGC 1 cut(s) 412
Kzo9I GATC 4 cut(s) 160, 251, 309, 461
LpnPI CCDG 3 cut(s) 50, 143, 440
Lsp1109I GCAGC 2 cut(s) 301, 329
MaeI CTAG 2 cut(s) 90, 434
MaeII ACGT 1 cut(s) 379
MaeIII GTNAC 2 cut(s) 11, 235
MalI GATC 4 cut(s) 162, 253, 311, 463
MboI GATC 4 cut(s) 160, 251, 309, 461
MboII GAAGA 2 cut(s) 339, 434
MfeI CAATTG 1 cut(s) 224
MflI RGATCY 1 cut(s) 160
MluCI AATT 4 cut(s) 72, 224, 400, 495
MnlI CCTC 4 cut(s) 98, 145, 222, 332
MroXI GAANNNNTTC 1 cut(s) 76
MseI TTAA 4 cut(s) 360, 375, 476, 499
MspA1I CMGCKG 1 cut(s) 8
MspI CCGG 1 cut(s) 37
MunI CAATTG 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 311
NdeII GATC 4 cut(s) 160, 251, 309, 461
NlaIII CATG 2 cut(s) 114, 411
NlaIV GGNNCC 2 cut(s) 162, 367
PdmI GAANNNNTTC 1 cut(s) 76
PfeI GAWTC 2 cut(s) 119, 295
PkrI GCNGC 2 cut(s) 316, 319
PpuMI RGGWCCY 1 cut(s) 365
Psp5II RGGWCCY 1 cut(s) 365
PspN4I GGNNCC 2 cut(s) 162, 367
PspPI GGNCC 1 cut(s) 365
PspPPI RGGWCCY 1 cut(s) 365
PstI CTGCAG 1 cut(s) 319
PsuI RGATCY 1 cut(s) 160
PvuII CAGCTG 1 cut(s) 8
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
SaqAI TTAA 4 cut(s) 360, 375, 476, 499
SatI GCNGC 2 cut(s) 315, 318
Sau3AI GATC 4 cut(s) 160, 251, 309, 461
Sau96I GGNCC 1 cut(s) 365
SetI ASST 6 cut(s) 10, 109, 307, 382, 439, 459
SfcI CTRYAG 1 cut(s) 315
SinI GGWCC 1 cut(s) 365
SpeI ACTAGT 1 cut(s) 89
Sse9I AATT 4 cut(s) 72, 224, 400, 495
SspMI CTAG 2 cut(s) 90, 434
TaaI ACNGT 2 cut(s) 168, 235
TaiI ACGT 1 cut(s) 382
TaqI TCGA 5 cut(s) 103, 122, 189, 324, 464
TasI AATT 4 cut(s) 72, 224, 400, 495
TfiI GAWTC 2 cut(s) 119, 295
Tru1I TTAA 4 cut(s) 360, 375, 476, 499
Tru9I TTAA 4 cut(s) 360, 375, 476, 499
TscAI CASTG 3 cut(s) 162, 171, 261
TseI GCWGC 2 cut(s) 314, 317
TspDTI ATGAA 1 cut(s) 485
TspRI CASTG 3 cut(s) 162, 171, 261
VpaK11BI GGWCC 1 cut(s) 365
XmnI GAANNNNTTC 1 cut(s) 76
XspI CTAG 2 cut(s) 90, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.