Rroxscaffold_4G00278800

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000119
Physical Location & Seq
Forward (+)
1703521 .. 1708845
5325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00278800.1

Sequence Viewer

Length: 1884 bp
ATGCAACTGTTTCCAAAGTTCCAAAGCCGACGTATCCGAACAGCAGGCATTGAGAAATGCACAGAAGTTTTTCAGTTCATATCAAAGACGCTGCACCAAACAAAGACGTCACATATCTGCTCGGCCTTGACGGCAAGGGCATGCACCTGTTTTCCGACCACCGGTATACGAAGCAAACCGGAGGCCTTGAAGGCGCAGGGTAACCCCAAAGGCGAGGATCCGACTTCAAACCTGGTTGAGGTGGTGGAGGGCTCGGAGAACCCGAAGGGGGTCGGCGCCGGAGCTGGAGAATTCAGCGAAGATGGCTCGGAGGTCGGCGTCGCGGATGTTGAATGCGGGGTGGAGATCGGAGGATTAGGAAGAAGAGGTCAAGGACGGCCGTTCAGAAAATTGCGGGACTACGAAGACTTTGCTTGGCTCTGTTACCTTACACCAGGTATAGGTTATGATTTCAACAGTCCTGAGGCTCTATTGCAACATCCAGTACGGACACCTCAACCTGGAGAACCTCAAGCAAGCAACAAATGGAAGAGGCCAACAGTTGCGGAAATTCTTTCAGTTATGAACCCATGGTGGAATACGATTCTTGTAACTTCATGTGTGATTGCAGTTTTATTTGATCCTTTGTTCTTTTACATTCCATACATCAAAGAGGAAGAAAAGTGCATGGGAATCGATAAACAAGTGAGGACTGCAGCTCTGGTTTTTCGATCAGTCACGGACATCACTTTCCTAGTGCATATCATATACCAACTCCGTGAAGCTATCAAATCTGCAGCCTCAAAGATTCCAAGGGATACCAATTCGGATTGGGAATGGGAATCGGTAACCCGAGTTCAGATGATTCAGTTTGCAAAAGAATTTTCTCGCAAATTGTCATGGCGCTCTTTCCTAACTGACGTTTTTGCTATTTTCCCTATGCCACAATCAGATAGTTCTATTACCAGTATCTCCCAACATAAATTTTTCATTGATGAGAATCTGTTTTCTTTTAGTTCTTTTGGCACAAGTTTGGAAACAAGTACCTATCTGTGGGAAAACAGCTTTGCAATTCTTATTTCTGTCATCGGCTTGCTATTATTTCTATATCTCATTGGAAATGTTCAGATATATATGGAGAGGGCAACTACCAGGGTGGAGGAGGTAAGAGAGAAGATTCTGATAAAAAAGAACGATATAGAAAAGTGGATGGAAAAAAATGGTCTCCAAGATGACATGAAGGAAGAGATCATGAAAAACATCAAGCAAAAATTGGAAGAGGACATAAATGCAGATCTGGAGGATCTAGTCTCTATTCTTCCCTGGTATACCAAGAAAGCTCTAAAGCGCGTTCTCTGCATGAGTGCGCTAAGAAAAGTACCAATGCTTAGCCAGATGGATGAAAAAGTTTTGAAAATGATGTGCGACTATCTGAAGCCCGTGAATTACCCAGAGAATACCCTGGTTTTTCAGATGGGAGAACCACTTGATCGAATGGTCTTCATTACAGAAGGGTTTATGTGGACTTACACGACTCCTACTGAGAGTAGTCATTTTGGAAAAGCAGCAGGACTGGCTACTTCTCCATCCATGGACACCAACTTCCTCAAGAAGGGTGATTCTTATGGACACGCTCTTCTGCAGTTTGCATCATCATCTCTTGTGGCACTCCCTACCTCAGCTGCAAATGTCCGGTGTCACACAAAGGTAGAGGCGTTCGTTCTCATGGCCAAGGACTTGAAAAACATAGTAACTAAATGCGAAAATTTTTGGCCTTTCGACTACAATGCTTCTAAAGATGAGGCGGTGGATCAGGTCACACCCCTGGGCCAGTTTCAGCAACAACAAATGCCAAAGAAGCGTGTATCAACATCGATCATCAACCCCACCGGCTATAGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

627

Amino Acids

70.96

Weight (kDa)

6.51

Isoelectric Point (pI)

45.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 275
AccI GTMKAC 2 cut(s) 166, 1307
AccII CGCG 2 cut(s) 323, 1329
AciI CCGC 5 cut(s) 323, 336, 394, 545, 1784
AclWI GGATC 5 cut(s) 212, 225, 614, 1290, 1797
AcoI YGGCCR 2 cut(s) 377, 1707
AcsI RAATTY 5 cut(s) 290, 549, 860, 962, 1744
AcuI CTGAAG 1 cut(s) 1433
AcyI GRCGYC 3 cut(s) 107, 276, 318
AfaI GTAC 3 cut(s) 486, 1024, 1359
AfiI CCNNNNNNNGG 7 cut(s) 161, 238, 268, 440, 500, 1032, 1591
AgeI ACCGGT 1 cut(s) 161
AgsI TTSAA 6 cut(s) 190, 228, 332, 454, 1393, 1720
AjnI CCWGG 7 cut(s) 231, 433, 499, 1130, 1301, 1440, 1803
AluBI AGCT 6 cut(s) 284, 698, 764, 1044, 1319, 1661
AluI AGCT 6 cut(s) 284, 698, 764, 1044, 1319, 1661
Alw26I GTCTC 2 cut(s) 1208, 1294
AlwI GGATC 5 cut(s) 212, 225, 614, 1290, 1797
Ama87I CYCGRG 1 cut(s) 831
AoxI GGCC 7 cut(s) 123, 183, 377, 533, 1707, 1751, 1807
ApeKI GCWGC 5 cut(s) 91, 695, 776, 1544, 1661
ApoI RAATTY 5 cut(s) 290, 549, 860, 962, 1744
AsiGI ACCGGT 1 cut(s) 161
Asp700I GAANNNNTTC 1 cut(s) 69
AspLEI GCGC 5 cut(s) 196, 278, 885, 1329, 1348
AspS9I GGNCC 1 cut(s) 1807
AsuHPI GGTGA 1 cut(s) 1607
AvaI CYCGRG 1 cut(s) 831
AxyI CCTNAGG 1 cut(s) 462
BalI TGGCCA 1 cut(s) 1709
BamHI GGATCC 1 cut(s) 217
BanI GGYRCC 1 cut(s) 275
BanII GRGCYC 1 cut(s) 254
BbsI GAAGAC 2 cut(s) 411, 1471
BbvCI CCTCAGC 1 cut(s) 1657
BbvI GCAGC 5 cut(s) 78, 707, 788, 1556, 1648
BccI CCATC 5 cut(s) 296, 1183, 1369, 1447, 1573
BceAI ACGGC 3 cut(s) 147, 364, 392
BcgI CGANNNNNNTGC 6 cut(s) 392, 426, 655, 689, 1748, 1782
BciT130I CCWGG 7 cut(s) 233, 435, 501, 1132, 1303, 1442, 1805
BciVI GTATCC 2 cut(s) 44, 790
BcoDI GTCTC 2 cut(s) 1208, 1294
BfaI CTAG 2 cut(s) 734, 1286
BfmI CTRYAG 4 cut(s) 693, 774, 1619, 1873
BfoI RGCGCY 2 cut(s) 279, 886
BfuI GTATCC 2 cut(s) 44, 790
BglI GCCNNNNNGGC 2 cut(s) 131, 191
BglII AGATCT 1 cut(s) 1273
BisI GCNGC 5 cut(s) 92, 696, 777, 1545, 1662
BlpI GCTNAGC 1 cut(s) 1367
BlsI GCNGC 5 cut(s) 93, 697, 778, 1546, 1663
Bme1390I CCNGG 7 cut(s) 233, 435, 501, 1132, 1303, 1442, 1805
BmeT110I CYCGRG 1 cut(s) 831
BmgT120I GGNCC 1 cut(s) 1807
BmiI GGNNCC 2 cut(s) 219, 277
BmrFI CCNGG 7 cut(s) 233, 435, 501, 1132, 1303, 1442, 1805
BmsI GCATC 1 cut(s) 1637
BpiI GAAGAC 2 cut(s) 411, 1471
BpmI CTGGAG 3 cut(s) 306, 522, 1298
Bpu10I CCTNAGC 1 cut(s) 1657
Bpu1102I GCTNAGC 1 cut(s) 1367
BpuEI CTTGAG 2 cut(s) 495, 1571
Bsa29I ATCGAT 2 cut(s) 675, 1853
BsaBI GATNNNNATC 1 cut(s) 978
BsaHI GRCGYC 3 cut(s) 107, 276, 318
BsaI GGTCTC 1 cut(s) 1208
BsaJI CCNNGG 9 cut(s) 569, 791, 1131, 1301, 1440, 1569, 1710, 1803, 1804
BsaWI WCCGGW 3 cut(s) 161, 178, 1671
Bsc4I CCNNNNNNNGG 7 cut(s) 161, 238, 268, 440, 500, 1032, 1591
Bse118I RCCGGY 2 cut(s) 161, 1868
Bse1I ACTGG 4 cut(s) 482, 945, 1557, 1810
Bse21I CCTNAGG 1 cut(s) 462
Bse8I GATNNNNATC 1 cut(s) 978
BseBI CCWGG 7 cut(s) 233, 435, 501, 1132, 1303, 1442, 1805
BseCI ATCGAT 2 cut(s) 675, 1853
BseDI CCNNGG 9 cut(s) 569, 791, 1131, 1301, 1440, 1569, 1710, 1803, 1804
BseGI GGATG 5 cut(s) 331, 478, 1194, 1384, 1565
BseJI GATNNNNATC 1 cut(s) 978
BseLI CCNNNNNNNGG 7 cut(s) 161, 238, 268, 440, 500, 1032, 1591
BseMII CTCAG 3 cut(s) 453, 1512, 1671
BseNI ACTGG 4 cut(s) 482, 945, 1557, 1810
BseRI GAGGAG 1 cut(s) 1154
BseX3I CGGCCG 1 cut(s) 377
BseXI GCAGC 5 cut(s) 78, 707, 788, 1556, 1648
BsgI GTGCAG 1 cut(s) 77
Bsh1236I CGCG 2 cut(s) 323, 1329
Bsh1285I CGRYCG 1 cut(s) 380
BshFI GGCC 7 cut(s) 125, 185, 379, 535, 1709, 1753, 1809
BshNI GGYRCC 1 cut(s) 275
BshTI ACCGGT 1 cut(s) 161
BshVI ATCGAT 2 cut(s) 675, 1853
BsiEI CGRYCG 1 cut(s) 380
BsiHKCI CYCGRG 1 cut(s) 831
BsiSI CCGG 5 cut(s) 162, 179, 279, 1672, 1869
BslFI GGGAC 1 cut(s) 410
BslI CCNNNNNNNGG 7 cut(s) 161, 238, 268, 440, 500, 1032, 1591
BsmAI GTCTC 2 cut(s) 1208, 1294
BsmFI GGGAC 1 cut(s) 410
BsmI GAATGC 1 cut(s) 338
BsnI GGCC 7 cut(s) 125, 185, 379, 535, 1709, 1753, 1809
Bso31I GGTCTC 1 cut(s) 1208
BsoBI CYCGRG 1 cut(s) 831
Bsp1286I GDGCHC 1 cut(s) 254
Bsp1720I GCTNAGC 1 cut(s) 1367
Bsp19I CCATGG 2 cut(s) 569, 1569
BspACI CCGC 5 cut(s) 323, 336, 394, 545, 1784
BspANI GGCC 7 cut(s) 125, 185, 379, 535, 1709, 1753, 1809
BspCNI CTCAG 3 cut(s) 454, 1513, 1670
BspDI ATCGAT 2 cut(s) 675, 1853
BspFNI CGCG 2 cut(s) 323, 1329
BspHI TCATGA 1 cut(s) 1230
BspLI GGNNCC 2 cut(s) 219, 277
BspMAI CTGCAG 3 cut(s) 697, 778, 1623
BspPI GGATC 5 cut(s) 212, 225, 614, 1290, 1797
BspQI GCTCTTC 1 cut(s) 1620
BspT107I GGYRCC 1 cut(s) 275
BspTNI GGTCTC 1 cut(s) 1208
BsrFI RCCGGY 2 cut(s) 161, 1868
BsrI ACTGG 4 cut(s) 482, 945, 1557, 1810
BssAI RCCGGY 2 cut(s) 161, 1868
BssECI CCNNGG 9 cut(s) 569, 791, 1131, 1301, 1440, 1569, 1710, 1803, 1804
BssNAI GTATAC 2 cut(s) 167, 1308
BssNI GRCGYC 3 cut(s) 107, 276, 318
BssT1I CCWWGG 4 cut(s) 569, 791, 1569, 1710
Bst1107I GTATAC 2 cut(s) 167, 1308
Bst2UI CCWGG 7 cut(s) 233, 435, 501, 1132, 1303, 1442, 1805
Bst4CI ACNGT 3 cut(s) 9, 458, 541
Bst6I CTCTTC 5 cut(s) 358, 524, 1218, 1251, 1620
BstACI GRCGYC 3 cut(s) 107, 276, 318
BstC8I GCNNGC 4 cut(s) 46, 142, 517, 1073
BstDEI CTNAG 5 cut(s) 462, 1349, 1367, 1521, 1657
BstDSI CCRYGG 2 cut(s) 569, 1569
BstEII GGTNACC 2 cut(s) 200, 826
BstENI CCTNNNNNAGG 2 cut(s) 236, 1589
BstF5I GGATG 5 cut(s) 331, 478, 1194, 1384, 1565
BstFNI CGCG 2 cut(s) 323, 1329
BstH2I RGCGCY 2 cut(s) 279, 886
BstHHI GCGC 5 cut(s) 196, 278, 885, 1329, 1348
BstMAI GTCTC 2 cut(s) 1208, 1294
BstMCI CGRYCG 1 cut(s) 380
BstMWI GCNNNNNNNGC 6 cut(s) 131, 191, 303, 1335, 1553, 1837
BstNI CCWGG 7 cut(s) 233, 435, 501, 1132, 1303, 1442, 1805
BstNSI RCATGY 1 cut(s) 144
BstPI GGTNACC 2 cut(s) 200, 826
BstSCI CCNGG 7 cut(s) 231, 433, 499, 1130, 1301, 1440, 1803
BstSFI CTRYAG 4 cut(s) 693, 774, 1619, 1873
BstUI CGCG 2 cut(s) 323, 1329
BstV1I GCAGC 5 cut(s) 78, 707, 788, 1556, 1648
BstV2I GAAGAC 2 cut(s) 411, 1471
BstX2I RGATCY 3 cut(s) 217, 1273, 1282
BstYI RGATCY 3 cut(s) 217, 1273, 1282
BstZ17I GTATAC 2 cut(s) 167, 1308
BstZI CGGCCG 1 cut(s) 377
Bsu15I ATCGAT 2 cut(s) 675, 1853
Bsu36I CCTNAGG 1 cut(s) 462
BsuI GTATCC 2 cut(s) 44, 790
BsuRI GGCC 7 cut(s) 125, 185, 379, 535, 1709, 1753, 1809
BsuTUI ATCGAT 2 cut(s) 675, 1853
BtgI CCRYGG 2 cut(s) 569, 1569
BtsCI GGATG 5 cut(s) 331, 478, 1194, 1384, 1565
Cac8I GCNNGC 4 cut(s) 46, 142, 517, 1073
CciI TCATGA 1 cut(s) 1230
CfoI GCGC 5 cut(s) 196, 278, 885, 1329, 1348
Cfr10I RCCGGY 2 cut(s) 161, 1868
Cfr13I GGNCC 1 cut(s) 1807
ClaI ATCGAT 2 cut(s) 675, 1853
CseI GACGC 2 cut(s) 97, 307
CsiI ACCWGGT 2 cut(s) 231, 433
Csp6I GTAC 3 cut(s) 485, 1023, 1358
CspAI ACCGGT 1 cut(s) 161
CviQI GTAC 3 cut(s) 485, 1023, 1358
DdeI CTNAG 5 cut(s) 462, 1349, 1367, 1521, 1657
DinI GGCGCC 1 cut(s) 277
EaeI YGGCCR 2 cut(s) 377, 1707
EagI CGGCCG 1 cut(s) 377
Eam1104I CTCTTC 5 cut(s) 358, 524, 1218, 1251, 1620
EarI CTCTTC 5 cut(s) 358, 524, 1218, 1251, 1620
EclXI CGGCCG 1 cut(s) 377
Eco130I CCWWGG 4 cut(s) 569, 791, 1569, 1710
Eco147I AGGCCT 1 cut(s) 185
Eco24I GRGCYC 1 cut(s) 254
Eco31I GGTCTC 1 cut(s) 1208
Eco52I CGGCCG 1 cut(s) 377
Eco57I CTGAAG 1 cut(s) 1433
Eco81I CCTNAGG 1 cut(s) 462
Eco88I CYCGRG 1 cut(s) 831
Eco91I GGTNACC 2 cut(s) 200, 826
EcoNI CCTNNNNNAGG 2 cut(s) 236, 1589
EcoO65I GGTNACC 2 cut(s) 200, 826
EcoRI GAATTC 1 cut(s) 290
EcoRII CCWGG 7 cut(s) 231, 433, 499, 1130, 1301, 1440, 1803
EcoT14I CCWWGG 4 cut(s) 569, 791, 1569, 1710
EcoT38I GRGCYC 1 cut(s) 254
EgeI GGCGCC 1 cut(s) 277
EheI GGCGCC 1 cut(s) 277
ErhI CCWWGG 4 cut(s) 569, 791, 1569, 1710
FaqI GGGAC 1 cut(s) 410
FauI CCCGC 2 cut(s) 329, 387
FblI GTMKAC 2 cut(s) 166, 1307
Fnu4HI GCNGC 5 cut(s) 92, 696, 777, 1545, 1662
FokI GGATG 5 cut(s) 338, 465, 1201, 1391, 1552
FriOI GRGCYC 1 cut(s) 254
Fsp4HI GCNGC 5 cut(s) 92, 696, 777, 1545, 1662
FspBI CTAG 2 cut(s) 734, 1286
GlaI GCGC 5 cut(s) 195, 277, 884, 1328, 1347
GluI GCNGC 5 cut(s) 92, 696, 777, 1545, 1662
GsuI CTGGAG 3 cut(s) 306, 522, 1298
HaeII RGCGCY 2 cut(s) 279, 886
HaeIII GGCC 7 cut(s) 125, 185, 379, 535, 1709, 1753, 1809
HapII CCGG 5 cut(s) 162, 179, 279, 1672, 1869
HgaI GACGC 2 cut(s) 97, 307
HhaI GCGC 5 cut(s) 196, 278, 885, 1329, 1348
Hin1I GRCGYC 3 cut(s) 107, 276, 318
Hin6I GCGC 5 cut(s) 194, 276, 883, 1327, 1346
HinP1I GCGC 5 cut(s) 194, 276, 883, 1327, 1346
HinfI GANTC 9 cut(s) 583, 672, 787, 821, 844, 979, 1156, 1513, 1598
HpaII CCGG 5 cut(s) 162, 179, 279, 1672, 1869
HphI GGTGA 1 cut(s) 1607
Hpy166II GTNNAC 3 cut(s) 167, 1308, 1503
Hpy188III TCNNGA 4 cut(s) 461, 1231, 1277, 1588
Hpy8I GTNNAC 3 cut(s) 167, 1308, 1503
Hpy99I CGWCG 2 cut(s) 33, 323
HpyAV CCTTC 5 cut(s) 184, 259, 1213, 1484, 1585
HpyCH4III ACNGT 3 cut(s) 9, 458, 541
HpyCH4IV ACGT 3 cut(s) 31, 107, 900
HpyF10VI GCNNNNNNNGC 6 cut(s) 131, 191, 303, 1335, 1553, 1837
HpyF3I CTNAG 5 cut(s) 462, 1349, 1367, 1521, 1657
HpySE526I ACGT 3 cut(s) 31, 107, 900
Hsp92I GRCGYC 3 cut(s) 107, 276, 318
HspAI GCGC 5 cut(s) 194, 276, 883, 1327, 1346
KasI GGCGCC 1 cut(s) 275
LguI GCTCTTC 1 cut(s) 1620
LmnI GCTCC 1 cut(s) 281
Lsp1109I GCAGC 5 cut(s) 78, 707, 788, 1556, 1648
LweI GCATC 1 cut(s) 1637
MabI ACCWGGT 2 cut(s) 231, 433
MaeI CTAG 2 cut(s) 734, 1286
MaeII ACGT 3 cut(s) 31, 107, 900
MaeIII GTNAC 9 cut(s) 108, 200, 422, 589, 715, 826, 1676, 1729, 1795
MflI RGATCY 3 cut(s) 217, 1273, 1282
MhlI GDGCHC 1 cut(s) 254
MlsI TGGCCA 1 cut(s) 1709
MluNI TGGCCA 1 cut(s) 1709
Mly113I GGCGCC 1 cut(s) 276
MlyI GAGTC 1 cut(s) 1507
MmeI TCCRAC 2 cut(s) 179, 245
Mox20I TGGCCA 1 cut(s) 1709
MroXI GAANNNNTTC 1 cut(s) 69
MscI TGGCCA 1 cut(s) 1709
Msp20I TGGCCA 1 cut(s) 1709
MspA1I CMGCKG 1 cut(s) 1661
MspI CCGG 5 cut(s) 162, 179, 279, 1672, 1869
MspR9I CCNGG 7 cut(s) 233, 435, 501, 1132, 1303, 1442, 1805
Mva1269I GAATGC 1 cut(s) 338
MvaI CCWGG 7 cut(s) 233, 435, 501, 1132, 1303, 1442, 1805
MvnI CGCG 2 cut(s) 323, 1329
MwoI GCNNNNNNNGC 6 cut(s) 131, 191, 303, 1335, 1553, 1837
NarI GGCGCC 1 cut(s) 276
NcoI CCATGG 2 cut(s) 569, 1569
NlaIV GGNNCC 2 cut(s) 219, 277
NmeAIII GCCGAG 1 cut(s) 101
NmuCI GTSAC 4 cut(s) 108, 715, 1676, 1795
NspI RCATGY 1 cut(s) 144
PaeI GCATGC 1 cut(s) 144
PagI TCATGA 1 cut(s) 1230
PasI CCCWGGG 1 cut(s) 1804
PceI AGGCCT 1 cut(s) 185
PciSI GCTCTTC 1 cut(s) 1620
PcsI WCGNNNNNNNCGW 1 cut(s) 260
PctI GAATGC 1 cut(s) 338
PdmI GAANNNNTTC 1 cut(s) 69
PfeI GAWTC 8 cut(s) 583, 672, 787, 821, 844, 979, 1156, 1598
PinAI ACCGGT 1 cut(s) 161
PkrI GCNGC 5 cut(s) 93, 697, 778, 1546, 1663
PleI GAGTC 1 cut(s) 1507
PluTI GGCGCC 1 cut(s) 279
PpsI GAGTC 1 cut(s) 1507
Psp6I CCWGG 7 cut(s) 231, 433, 499, 1130, 1301, 1440, 1803
PspEI GGTNACC 2 cut(s) 200, 826
PspGI CCWGG 7 cut(s) 231, 433, 499, 1130, 1301, 1440, 1803
PspN4I GGNNCC 2 cut(s) 219, 277
PspPI GGNCC 1 cut(s) 1807
PsrI GAACNNNNNNTAC 2 cut(s) 819, 851
PstI CTGCAG 3 cut(s) 697, 778, 1623
PsuI RGATCY 3 cut(s) 217, 1273, 1282
PvuII CAGCTG 1 cut(s) 1661
RsaI GTAC 3 cut(s) 486, 1024, 1359
RsaNI GTAC 3 cut(s) 485, 1023, 1358
SapI GCTCTTC 1 cut(s) 1620
SatI GCNGC 5 cut(s) 92, 696, 777, 1545, 1662
Sau96I GGNCC 1 cut(s) 1807
SchI GAGTC 1 cut(s) 1507
ScrFI CCNGG 7 cut(s) 233, 435, 501, 1132, 1303, 1442, 1805
SduI GDGCHC 1 cut(s) 254
SexAI ACCWGGT 2 cut(s) 231, 433
SfaNI GCATC 1 cut(s) 1637
SfcI CTRYAG 4 cut(s) 693, 774, 1619, 1873
SfoI GGCGCC 1 cut(s) 277
SmlI CTYRAG 2 cut(s) 510, 1586
SmoI CTYRAG 2 cut(s) 510, 1586
SphI GCATGC 1 cut(s) 144
SseBI AGGCCT 1 cut(s) 185
SsiI CCGC 5 cut(s) 323, 336, 394, 545, 1784
SspDI GGCGCC 1 cut(s) 275
SspMI CTAG 2 cut(s) 734, 1286
StuI AGGCCT 1 cut(s) 185
StyD4I CCNGG 7 cut(s) 231, 433, 499, 1130, 1301, 1440, 1803
StyI CCWWGG 4 cut(s) 569, 791, 1569, 1710
TaaI ACNGT 3 cut(s) 9, 458, 541
TaiI ACGT 3 cut(s) 34, 110, 903
TaqI TCGA 5 cut(s) 675, 709, 1471, 1758, 1853
TfiI GAWTC 8 cut(s) 583, 672, 787, 821, 844, 979, 1156, 1598
TseFI GTSAC 4 cut(s) 108, 715, 1676, 1795
TseI GCWGC 5 cut(s) 91, 695, 776, 1544, 1661
Tsp45I GTSAC 4 cut(s) 108, 715, 1676, 1795
TspDTI ATGAA 8 cut(s) 67, 578, 585, 958, 1232, 1247, 1395, 1471
TspGWI ACGGA 3 cut(s) 502, 734, 746
XagI CCTNNNNNAGG 2 cut(s) 236, 1589
XapI RAATTY 5 cut(s) 290, 549, 860, 962, 1744
XceI RCATGY 1 cut(s) 144
XmiI GTMKAC 2 cut(s) 166, 1307
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 2 cut(s) 734, 1286
ZraI GACGTC 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.