Rmu_sc0000479.1_g000005

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000479.1
OG0000119
Physical Location & Seq
Forward (+)
14280 .. 14762
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000479.1_g000005.1.cds

Sequence Viewer

Length: 483 bp
atggatgagaaagtgttgaaaatgatctgcgactatctaaagccagagatgtatgctgagggcaccatggtttttcacatgggagaaccgcttgatagcatgctattcattacagaaggcactatactgacctacaaaactaccggtactgataatcatgctcatgaaaacgcaaaattgggtcgtcctgcatccccatcaatcggcacccttgagaaaggctacttctatggcgaacaactgctgcactgggcatcacaaaaaaacgtgaatttaacggaggtccctagctctgccgagaatgtgaagtgccatacaaaagtagaaggctttgttctcatggccaaggacttaagaactgtagtctccaaatgtgagtactggtggaaattaagcattagtaatcctagagtgggtggtactcggaccacaccaaatgctaggaatgtgcagcagaaacctggtgtggatccccagtactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

160

Amino Acids

18.01

Weight (kDa)

6.96

Isoelectric Point (pI)

30.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 62, 206
AciI CCGC 1 cut(s) 89
AclWI GGATC 2 cut(s) 464, 477
AcoI YGGCCR 1 cut(s) 342
AcsI RAATTY 1 cut(s) 271
AfaI GTAC 4 cut(s) 148, 380, 421, 479
AfiI CCNNNNNNNGG 2 cut(s) 203, 413
AflII CTTAAG 1 cut(s) 352
AgeI ACCGGT 1 cut(s) 143
AgsI TTSAA 1 cut(s) 19
AjnI CCWGG 1 cut(s) 460
AluBI AGCT 1 cut(s) 291
AluI AGCT 1 cut(s) 291
Alw26I GTCTC 1 cut(s) 370
AlwI GGATC 2 cut(s) 464, 477
AoxI GGCC 1 cut(s) 342
ApeKI GCWGC 2 cut(s) 244, 451
ApoI RAATTY 1 cut(s) 271
AsiGI ACCGGT 1 cut(s) 143
AspS9I GGNCC 2 cut(s) 283, 426
AvaII GGWCC 2 cut(s) 283, 426
BaeGI GKGCMC 1 cut(s) 65
BalI TGGCCA 1 cut(s) 344
BamHI GGATCC 1 cut(s) 469
BanI GGYRCC 2 cut(s) 62, 206
BarI GAAGNNNNNNTAC 2 cut(s) 108, 140
BbvCI CCTCAGC 1 cut(s) 57
BbvI GCAGC 2 cut(s) 231, 463
BccI CCATC 1 cut(s) 205
BciT130I CCWGG 1 cut(s) 462
BcoDI GTCTC 1 cut(s) 370
BfaI CTAG 4 cut(s) 288, 408, 441, 481
BfmI CTRYAG 1 cut(s) 360
BfrI CTTAAG 1 cut(s) 352
BisI GCNGC 2 cut(s) 245, 452
BlsI GCNGC 2 cut(s) 246, 453
BmcAI AGTACT 2 cut(s) 380, 479
Bme1390I CCNGG 1 cut(s) 462
Bme18I GGWCC 2 cut(s) 283, 426
BmgT120I GGNCC 2 cut(s) 283, 426
BmiI GGNNCC 4 cut(s) 64, 208, 285, 471
BmrFI CCNGG 1 cut(s) 462
BmrI ACTGGG 2 cut(s) 259, 469
BmsI GCATC 2 cut(s) 200, 263
BmuI ACTGGG 2 cut(s) 259, 469
Bpu10I CCTNAGC 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 233
BsaJI CCNNGG 2 cut(s) 66, 345
BsaWI WCCGGW 1 cut(s) 143
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 413
Bse118I RCCGGY 1 cut(s) 143
Bse1I ACTGG 3 cut(s) 254, 386, 475
BseBI CCWGG 1 cut(s) 462
BseDI CCNNGG 2 cut(s) 66, 345
BseGI GGATG 2 cut(s) 10, 191
BseLI CCNNNNNNNGG 2 cut(s) 203, 413
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 3 cut(s) 254, 386, 475
BseSI GKGCMC 1 cut(s) 65
BseXI GCAGC 2 cut(s) 231, 463
BsgI GTGCAG 2 cut(s) 230, 470
BshFI GGCC 1 cut(s) 344
BshNI GGYRCC 2 cut(s) 62, 206
BshTI ACCGGT 1 cut(s) 143
BsiSI CCGG 1 cut(s) 144
BslFI GGGAC 1 cut(s) 269
BslI CCNNNNNNNGG 2 cut(s) 203, 413
BsmAI GTCTC 1 cut(s) 370
BsmFI GGGAC 1 cut(s) 269
BsnI GGCC 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 2 cut(s) 24, 469
Bsp19I CCATGG 1 cut(s) 66
BspACI CCGC 1 cut(s) 89
BspANI GGCC 1 cut(s) 344
BspCNI CTCAG 1 cut(s) 49
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 4 cut(s) 64, 208, 285, 471
BspPI GGATC 2 cut(s) 464, 477
BspT107I GGYRCC 2 cut(s) 62, 206
BspTI CTTAAG 1 cut(s) 352
BsrFI RCCGGY 1 cut(s) 143
BsrI ACTGG 3 cut(s) 254, 386, 475
BssAI RCCGGY 1 cut(s) 143
BssECI CCNNGG 2 cut(s) 66, 345
BssMI GATC 2 cut(s) 24, 469
BssT1I CCWWGG 2 cut(s) 66, 345
Bst2UI CCWGG 1 cut(s) 462
Bst4CI ACNGT 1 cut(s) 361
BstAFI CTTAAG 1 cut(s) 352
BstC8I GCNNGC 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 57
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 2 cut(s) 10, 191
BstKTI GATC 2 cut(s) 27, 472
BstMAI GTCTC 1 cut(s) 370
BstMBI GATC 2 cut(s) 24, 469
BstNI CCWGG 1 cut(s) 462
BstNSI RCATGY 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 460
BstSFI CTRYAG 1 cut(s) 360
BstSLI GKGCMC 1 cut(s) 65
BstV1I GCAGC 2 cut(s) 231, 463
BstX2I RGATCY 1 cut(s) 469
BstYI RGATCY 1 cut(s) 469
BsuRI GGCC 1 cut(s) 344
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 2 cut(s) 10, 191
BtsIMutI CAGTG 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 101
CciI TCATGA 1 cut(s) 163
Cfr10I RCCGGY 1 cut(s) 143
Cfr13I GGNCC 2 cut(s) 283, 426
CsiI ACCWGGT 1 cut(s) 460
Csp6I GTAC 4 cut(s) 147, 379, 420, 478
CspAI ACCGGT 1 cut(s) 143
CviAII CATG 6 cut(s) 67, 79, 100, 158, 164, 340
CviJI RGCY 5 cut(s) 43, 222, 291, 330, 344
CviKI_1 RGCY 5 cut(s) 43, 222, 291, 330, 344
CviQI GTAC 4 cut(s) 147, 379, 420, 478
DdeI CTNAG 1 cut(s) 57
DpnI GATC 2 cut(s) 26, 471
DpnII GATC 2 cut(s) 24, 469
EaeI YGGCCR 1 cut(s) 342
Eco130I CCWWGG 2 cut(s) 66, 345
Eco47I GGWCC 2 cut(s) 283, 426
EcoO109I RGGNCCY 1 cut(s) 283
EcoRII CCWGG 1 cut(s) 460
EcoT14I CCWWGG 2 cut(s) 66, 345
ErhI CCWWGG 2 cut(s) 66, 345
FaeI CATG 6 cut(s) 70, 82, 103, 161, 167, 343
FaqI GGGAC 1 cut(s) 269
FatI CATG 6 cut(s) 66, 78, 99, 157, 163, 339
Fnu4HI GCNGC 2 cut(s) 245, 452
FokI GGATG 2 cut(s) 17, 178
Fsp4HI GCNGC 2 cut(s) 245, 452
FspBI CTAG 4 cut(s) 288, 408, 441, 481
GluI GCNGC 2 cut(s) 245, 452
HaeIII GGCC 1 cut(s) 344
HapII CCGG 1 cut(s) 144
Hin1II CATG 6 cut(s) 70, 82, 103, 161, 167, 343
HpaII CCGG 1 cut(s) 144
Hpy188I TCNGA 1 cut(s) 426
Hpy188III TCNNGA 1 cut(s) 164
HpyAV CCTTC 2 cut(s) 110, 320
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 3 cut(s) 191, 247, 451
HpyF3I CTNAG 1 cut(s) 57
HpySE526I ACGT 1 cut(s) 267
Hsp92II CATG 6 cut(s) 70, 82, 103, 161, 167, 343
Kzo9I GATC 2 cut(s) 24, 469
LpnPI CCDG 7 cut(s) 57, 157, 201, 235, 367, 447, 474
Lsp1109I GCAGC 2 cut(s) 231, 463
LweI GCATC 2 cut(s) 200, 263
MabI ACCWGGT 1 cut(s) 460
MaeI CTAG 4 cut(s) 288, 408, 441, 481
MaeII ACGT 1 cut(s) 267
MalI GATC 2 cut(s) 26, 471
MboI GATC 2 cut(s) 24, 469
MflI RGATCY 1 cut(s) 469
MhlI GDGCHC 1 cut(s) 65
MlsI TGGCCA 1 cut(s) 344
MluCI AATT 3 cut(s) 176, 271, 389
MluNI TGGCCA 1 cut(s) 344
MnlI CCTC 2 cut(s) 52, 274
Mox20I TGGCCA 1 cut(s) 344
MscI TGGCCA 1 cut(s) 344
MseI TTAA 3 cut(s) 275, 353, 392
MslI CAYNNNNRTG 1 cut(s) 162
Msp20I TGGCCA 1 cut(s) 344
MspCI CTTAAG 1 cut(s) 352
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 462
MvaI CCWGG 1 cut(s) 462
NcoI CCATGG 1 cut(s) 66
NdeII GATC 2 cut(s) 24, 469
NlaIII CATG 6 cut(s) 70, 82, 103, 161, 167, 343
NlaIV GGNNCC 4 cut(s) 64, 208, 285, 471
NmeAIII GCCGAG 1 cut(s) 322
NspI RCATGY 1 cut(s) 103
PaeI GCATGC 1 cut(s) 103
PagI TCATGA 1 cut(s) 163
PinAI ACCGGT 1 cut(s) 143
PkrI GCNGC 2 cut(s) 246, 453
PpuMI RGGWCCY 1 cut(s) 283
Psp5II RGGWCCY 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 460
PspGI CCWGG 1 cut(s) 460
PspN4I GGNNCC 4 cut(s) 64, 208, 285, 471
PspPI GGNCC 2 cut(s) 283, 426
PspPPI RGGWCCY 1 cut(s) 283
PsuI RGATCY 1 cut(s) 469
RsaI GTAC 4 cut(s) 148, 380, 421, 479
RsaNI GTAC 4 cut(s) 147, 379, 420, 478
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 3 cut(s) 275, 353, 392
SatI GCNGC 2 cut(s) 245, 452
Sau3AI GATC 2 cut(s) 24, 469
Sau96I GGNCC 2 cut(s) 283, 426
ScaI AGTACT 2 cut(s) 380, 479
ScrFI CCNGG 1 cut(s) 462
SduI GDGCHC 1 cut(s) 65
SetI ASST 5 cut(s) 134, 270, 285, 293, 463
SexAI ACCWGGT 1 cut(s) 460
SfaNI GCATC 2 cut(s) 200, 263
SfcI CTRYAG 1 cut(s) 360
SinI GGWCC 2 cut(s) 283, 426
SmiMI CAYNNNNRTG 1 cut(s) 162
SmlI CTYRAG 2 cut(s) 212, 352
SmoI CTYRAG 2 cut(s) 212, 352
SphI GCATGC 1 cut(s) 103
Sse9I AATT 3 cut(s) 176, 271, 389
SsiI CCGC 1 cut(s) 89
SspMI CTAG 4 cut(s) 288, 408, 441, 481
StyD4I CCNGG 1 cut(s) 460
StyI CCWWGG 2 cut(s) 66, 345
TaaI ACNGT 1 cut(s) 361
TaiI ACGT 1 cut(s) 270
TasI AATT 3 cut(s) 176, 271, 389
TatI WGTACW 2 cut(s) 378, 477
Tru1I TTAA 3 cut(s) 275, 353, 392
Tru9I TTAA 3 cut(s) 275, 353, 392
TscAI CASTG 1 cut(s) 254
TseI GCWGC 2 cut(s) 244, 451
TspDTI ATGAA 2 cut(s) 97, 180
TspGWI ACGGA 1 cut(s) 293
TspRI CASTG 1 cut(s) 254
Vha464I CTTAAG 1 cut(s) 352
VpaK11BI GGWCC 2 cut(s) 283, 426
XapI RAATTY 1 cut(s) 271
XceI RCATGY 1 cut(s) 103
XspI CTAG 4 cut(s) 288, 408, 441, 481
ZrmI AGTACT 2 cut(s) 380, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.