RchiOBHm_Chr5g0017271

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000119
Physical Location & Seq
Reverse (-)
11967200 .. 11971183
3984 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29758

Sequence Viewer

Length: 1845 bp
ATGTCTAACAACCAGGTACCCAGTGATGTCCCTATGATGAGCATCACACGGGGAATCAAGTACAATTTCGACAATGTTGAGGAGCAACCGCGAGATCCCCCGTGGAGTGATCGAGATGCAGCTTCAACAAAACAAAAATTGGAAGAAACAGTTCTTTCAGTTTCATTCTGGAATAAGATGTTCGTACTTGCATGTGTGATTGCAGTCTCATTAGACCCGTTGTTCTTCTACATTCCAATGATCGATGAAGAAGAAAAGTGCCTTGCAGTAGACAAAGAGTTGAGGACTATAACTCTCATTTTGCGATCGCTTACTGATGTCACTTTCGTAGTGAATATCATATATCATGTTTGCAAAGCCATTAACGCCGCCTACAAAGTACACAAAGGAAAAAAGTCTGAATTGGCATCTGATTGGGAATTTTCGAAGGTATCAACAGCGGAGATAATTCCATTTGCTAAATTAGTTGCTGGGAAGCTAGCATGGCGCTCTACGCTAACCAGCATTTTAGCTGTTTTCCCCATGCCACAACTGCTTCTAGTATTTGTCTTCTTCAAAATGAGAGGCCATGGATACTTGGAGCGTAGAAAGATTCTGAATGTCTTTCTTCTCGCTCAATATCTGCCAAGGATCTATCGAATTTACCTATCATCTCAGAAACTTAGACAAACTACTGGAATATGGGCTAAAGCTCTGTTTAATTTTTTTCTATATATACTTGCAAGTCATGTCCTTGGAGCTTTTTGGTACTTTTTTTCTATTCAACGAGAAACTTCTTGTTGGCATCGGGCATGTGTAAATAATAGTACAGATGTTGAAGGATGTATGAGTACCTTATACTGTGAGGTTCACAATATTGCTGCAAGAAATGCCACATTCCTTGATCAATTTTGCCCTATAAGTGCTGAAGAGAATGCTAAGGCCCCTTTTGATTTTGGAATATTTTTGGATTCCCTAAAAAATGGTATCACAGGGGATATACACTTCGGAACGAAGTTATCTTACTCTTTTTGGTGGGGATTGCGTAATCTAAGTAATTTTGGCACGAATCTCGAAACAAGCACCTATGTGTGGGAAACTTGCTTTGCAATTTTTATTTCTGTCATTGGCTTGCTACTATTTCTATATCTCATTGGAAATGTGCAGACATTTATGTCCATGGAAACTCAAAGATGGGAGGACATAAGAAACAAGATACAATTGAAAGAGAAAGATATAGCAGAATGGATGGATAGAAATGAGCTCCCAGACGATATGAAGAAAGAAATTATGAAGAACATAAAGCAAAAACTGGAAGAGAATAAAGATGCTGATCTTGAGAATCTTTTCTCTGTTCTTCCGATATATACCAAAAAGTGTCTAAAGCGTTTCCTCTGCATGAAAACGCTAAAGAAAGTCCCAAAGCTTGAGAGGATGGATGAAATAGTGTTGAAAATGATGTGTGACTATCTAAAGCCAGTGATGTATGCCGAGGGCACCGTGGTTTTACAAATGGGAGATCCACTACATAGCATGCTACTCATTACAGAAGGCACATTATTGACCTACAGAACTACCAGTAATGATAGTCATGTTGCAACTGAAAACGCAAAAATGGGTAGTATTCCAAGTTCTCCGTCAGTGGGCAACCTTGACAAAGGTGACTTTTATGGCGCCGAAGAACTGATCGAGTGGGTAACACAAAAGAAGGATTTAGGCCAGCTTCCCGGCTCTGCCTTCAATGTGAAATGCGATTCAAAAGTAGAAGGCTTTGTTCTCGCGGCCAAGGACTTGAGAAGTGTAGTTTCCAAATGCGAAAACTGGTGGAAAATTGGCATTAGCCAGTCAGACCACAGCAAATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

614

Amino Acids

70.39

Weight (kDa)

7.8

Isoelectric Point (pI)

41.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 56 - 392 5.1e-08 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1153
Acc65I GGTACC 1 cut(s) 16
AccB1I GGYRCC 3 cut(s) 16, 1475, 1652
AccI GTMKAC 1 cut(s) 270
AccII CGCG 2 cut(s) 91, 1760
AciI CCGC 4 cut(s) 89, 369, 440, 1760
AclWI GGATC 3 cut(s) 89, 638, 1493
AcoI YGGCCR 1 cut(s) 1761
AcsI RAATTY 2 cut(s) 419, 639
AcuI CTGAAG 1 cut(s) 927
AcyI GRCGYC 1 cut(s) 1653
AfaI GTAC 7 cut(s) 18, 62, 186, 381, 749, 808, 832
AfiI CCNNNNNNNGG 2 cut(s) 1071, 1622
AgsI TTSAA 8 cut(s) 126, 556, 764, 818, 1204, 1432, 1720, 1737
AjnI CCWGG 1 cut(s) 12
AleI CACNNNNGTG 1 cut(s) 1067
AluBI AGCT 8 cut(s) 122, 478, 512, 692, 740, 1243, 1405, 1702
AluI AGCT 8 cut(s) 122, 478, 512, 692, 740, 1243, 1405, 1702
Alw21I GWGCWC 1 cut(s) 1245
Alw26I GTCTC 1 cut(s) 211
AlwI GGATC 3 cut(s) 89, 638, 1493
AoxI GGCC 4 cut(s) 565, 921, 1696, 1761
ApeKI GCWGC 2 cut(s) 119, 860
ApoI RAATTY 2 cut(s) 419, 639
AsiSI GCGATCGC 1 cut(s) 308
Asp700I GAANNNNTTC 2 cut(s) 150, 1325
Asp718I GGTACC 1 cut(s) 16
AspLEI GCGC 2 cut(s) 489, 1655
AspS9I GGNCC 1 cut(s) 922
AsuC2I CCSGG 1 cut(s) 1707
AsuHPI GGTGA 1 cut(s) 1652
AsuII TTCGAA 1 cut(s) 425
AsuNHI GCTAGC 1 cut(s) 478
BaeGI GKGCMC 1 cut(s) 1478
BanI GGYRCC 3 cut(s) 16, 1475, 1652
BanII GRGCYC 1 cut(s) 1245
BarI GAAGNNNNNNTAC 2 cut(s) 986, 1018
BbsI GAAGAC 1 cut(s) 541
Bbv12I GWGCWC 1 cut(s) 1245
BbvI GCAGC 2 cut(s) 131, 847
BccI CCATC 3 cut(s) 1167, 1222, 1408
BcgI CGANNNNNNTGC 2 cut(s) 1033, 1067
BciT130I CCWGG 1 cut(s) 14
BciVI GTATCC 1 cut(s) 566
BclI TGATCA 1 cut(s) 883
BcnI CCSGG 1 cut(s) 1707
BcoDI GTCTC 1 cut(s) 211
BfaI CTAG 3 cut(s) 479, 539, 1843
BfmI CTRYAG 1 cut(s) 1546
BfoI RGCGCY 2 cut(s) 490, 1656
BfuI GTATCC 1 cut(s) 566
BisI GCNGC 4 cut(s) 120, 369, 861, 1761
BlsI GCNGC 4 cut(s) 121, 370, 862, 1762
Bme1390I CCNGG 2 cut(s) 14, 1707
BmgT120I GGNCC 1 cut(s) 922
BmiI GGNNCC 4 cut(s) 18, 924, 1477, 1654
BmrFI CCNGG 2 cut(s) 14, 1707
BmrI ACTGGG 1 cut(s) 15
BmsI GCATC 5 cut(s) 51, 106, 416, 793, 1297
BmtI GCTAGC 1 cut(s) 482
BmuI ACTGGG 1 cut(s) 15
BpiI GAAGAC 1 cut(s) 541
Bpu10I CCTNAGC 1 cut(s) 918
Bpu14I TTCGAA 1 cut(s) 425
BpuEI CTTGAG 3 cut(s) 1337, 1427, 1792
BpuMI CCSGG 1 cut(s) 1707
Bsa29I ATCGAT 1 cut(s) 243
BsaBI GATNNNNATC 2 cut(s) 41, 1311
BsaHI GRCGYC 1 cut(s) 1653
BsaJI CCNNGG 8 cut(s) 101, 568, 626, 733, 1158, 1470, 1479, 1764
Bsc4I CCNNNNNNNGG 2 cut(s) 1071, 1622
Bse1I ACTGG 7 cut(s) 21, 679, 1296, 1457, 1557, 1805, 1822
Bse8I GATNNNNATC 2 cut(s) 41, 1311
BseBI CCWGG 1 cut(s) 14
BseCI ATCGAT 1 cut(s) 243
BseDI CCNNGG 8 cut(s) 101, 568, 626, 733, 1158, 1470, 1479, 1764
BseGI GGATG 4 cut(s) 827, 1233, 1419, 1423
BseJI GATNNNNATC 2 cut(s) 41, 1311
BseLI CCNNNNNNNGG 2 cut(s) 1071, 1622
BseMII CTCAG 1 cut(s) 668
BseNI ACTGG 7 cut(s) 21, 679, 1296, 1457, 1557, 1805, 1822
BseRI GAGGAG 1 cut(s) 95
BseSI GKGCMC 1 cut(s) 1478
BseXI GCAGC 2 cut(s) 131, 847
BseYI CCCAGC 1 cut(s) 470
BsgI GTGCAG 1 cut(s) 1163
Bsh1236I CGCG 2 cut(s) 91, 1760
Bsh1285I CGRYCG 1 cut(s) 308
BshFI GGCC 4 cut(s) 567, 923, 1698, 1763
BshNI GGYRCC 3 cut(s) 16, 1475, 1652
BshVI ATCGAT 1 cut(s) 243
BsiEI CGRYCG 1 cut(s) 308
BsiHKAI GWGCWC 1 cut(s) 1245
BsiSI CCGG 1 cut(s) 1707
BslFI GGGAC 2 cut(s) 14, 1382
BslI CCNNNNNNNGG 2 cut(s) 1071, 1622
BsmAI GTCTC 1 cut(s) 211
BsmFI GGGAC 2 cut(s) 14, 1382
BsmI GAATGC 1 cut(s) 919
BsnI GGCC 4 cut(s) 567, 923, 1698, 1763
Bsp119I TTCGAA 1 cut(s) 425
Bsp1286I GDGCHC 2 cut(s) 1245, 1478
Bsp143I GATC 9 cut(s) 94, 109, 240, 305, 630, 883, 1312, 1498, 1665
Bsp19I CCATGG 2 cut(s) 568, 1158
BspACI CCGC 4 cut(s) 89, 369, 440, 1760
BspANI GGCC 4 cut(s) 567, 923, 1698, 1763
BspCNI CTCAG 1 cut(s) 667
BspDI ATCGAT 1 cut(s) 243
BspFNI CGCG 2 cut(s) 91, 1760
BspLI GGNNCC 4 cut(s) 18, 924, 1477, 1654
BspOI GCTAGC 1 cut(s) 482
BspPI GGATC 3 cut(s) 89, 638, 1493
BspT104I TTCGAA 1 cut(s) 425
BspT107I GGYRCC 3 cut(s) 16, 1475, 1652
BsrI ACTGG 7 cut(s) 21, 679, 1296, 1457, 1557, 1805, 1822
BssECI CCNNGG 8 cut(s) 101, 568, 626, 733, 1158, 1470, 1479, 1764
BssMI GATC 9 cut(s) 94, 109, 240, 305, 630, 883, 1312, 1498, 1665
BssNI GRCGYC 1 cut(s) 1653
BssT1I CCWWGG 5 cut(s) 568, 626, 733, 1158, 1764
Bst2UI CCWGG 1 cut(s) 14
Bst4CI ACNGT 3 cut(s) 151, 842, 1480
Bst6I CTCTTC 2 cut(s) 903, 1290
BstACI GRCGYC 1 cut(s) 1653
BstAPI GCANNNNNTGC 1 cut(s) 869
BstBI TTCGAA 1 cut(s) 425
BstC8I GCNNGC 4 cut(s) 480, 1112, 1514, 1700
BstDEI CTNAG 4 cut(s) 654, 662, 918, 1031
BstDSI CCRYGG 4 cut(s) 101, 568, 1158, 1479
BstF5I GGATG 4 cut(s) 827, 1233, 1419, 1423
BstFNI CGCG 2 cut(s) 91, 1760
BstH2I RGCGCY 2 cut(s) 490, 1656
BstHHI GCGC 2 cut(s) 489, 1655
BstKTI GATC 9 cut(s) 97, 112, 243, 308, 633, 886, 1315, 1501, 1668
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 9 cut(s) 94, 109, 240, 305, 630, 883, 1312, 1498, 1665
BstMCI CGRYCG 1 cut(s) 308
BstMWI GCNNNNNNNGC 5 cut(s) 365, 484, 493, 532, 869
BstNI CCWGG 1 cut(s) 14
BstNSI RCATGY 3 cut(s) 195, 795, 1516
BstSCI CCNGG 2 cut(s) 12, 1705
BstSFI CTRYAG 1 cut(s) 1546
BstSLI GKGCMC 1 cut(s) 1478
BstUI CGCG 2 cut(s) 91, 1760
BstV1I GCAGC 2 cut(s) 131, 847
BstV2I GAAGAC 1 cut(s) 541
BstX2I RGATCY 3 cut(s) 94, 630, 1498
BstYI RGATCY 3 cut(s) 94, 630, 1498
Bsu15I ATCGAT 1 cut(s) 243
BsuI GTATCC 1 cut(s) 566
BsuRI GGCC 4 cut(s) 567, 923, 1698, 1763
BsuTUI ATCGAT 1 cut(s) 243
BtgI CCRYGG 4 cut(s) 101, 568, 1158, 1479
BtsCI GGATG 4 cut(s) 827, 1233, 1419, 1423
BtsIMutI CAGTG 3 cut(s) 28, 1464, 1626
Cac8I GCNNGC 4 cut(s) 480, 1112, 1514, 1700
CfoI GCGC 2 cut(s) 489, 1655
Cfr13I GGNCC 1 cut(s) 922
ClaI ATCGAT 1 cut(s) 243
CsiI ACCWGGT 1 cut(s) 12
Csp6I GTAC 7 cut(s) 17, 61, 185, 380, 748, 807, 831
CspCI CAANNNNNGTGG 2 cut(s) 862, 897
CviQI GTAC 7 cut(s) 17, 61, 185, 380, 748, 807, 831
DdeI CTNAG 4 cut(s) 654, 662, 918, 1031
DinI GGCGCC 1 cut(s) 1654
DpnI GATC 9 cut(s) 96, 111, 242, 307, 632, 885, 1314, 1500, 1667
DpnII GATC 9 cut(s) 94, 109, 240, 305, 630, 883, 1312, 1498, 1665
DrdI GACNNNNNNGTC 1 cut(s) 1153
DseDI GACNNNNNNGTC 1 cut(s) 1153
EaeI YGGCCR 1 cut(s) 1761
Eam1104I CTCTTC 2 cut(s) 903, 1290
EarI CTCTTC 2 cut(s) 903, 1290
Ecl136II GAGCTC 1 cut(s) 1243
Eco130I CCWWGG 5 cut(s) 568, 626, 733, 1158, 1764
Eco24I GRGCYC 1 cut(s) 1245
Eco53kI GAGCTC 1 cut(s) 1243
Eco57I CTGAAG 1 cut(s) 927
EcoICRI GAGCTC 1 cut(s) 1243
EcoO109I RGGNCCY 1 cut(s) 922
EcoRII CCWGG 1 cut(s) 12
EcoT14I CCWWGG 5 cut(s) 568, 626, 733, 1158, 1764
EcoT38I GRGCYC 1 cut(s) 1245
EgeI GGCGCC 1 cut(s) 1654
EheI GGCGCC 1 cut(s) 1654
ErhI CCWWGG 5 cut(s) 568, 626, 733, 1158, 1764
FaqI GGGAC 2 cut(s) 14, 1382
FbaI TGATCA 1 cut(s) 883
FblI GTMKAC 1 cut(s) 270
Fnu4HI GCNGC 4 cut(s) 120, 369, 861, 1761
FokI GGATG 4 cut(s) 834, 1240, 1426, 1430
FriOI GRGCYC 1 cut(s) 1245
Fsp4HI GCNGC 4 cut(s) 120, 369, 861, 1761
FspBI CTAG 3 cut(s) 479, 539, 1843
GlaI GCGC 2 cut(s) 488, 1654
GluI GCNGC 4 cut(s) 120, 369, 861, 1761
GsaI CCCAGC 1 cut(s) 474
HaeII RGCGCY 2 cut(s) 490, 1656
HaeIII GGCC 4 cut(s) 567, 923, 1698, 1763
HapII CCGG 1 cut(s) 1707
HhaI GCGC 2 cut(s) 489, 1655
Hin1I GRCGYC 1 cut(s) 1653
Hin6I GCGC 2 cut(s) 487, 1653
HinP1I GCGC 2 cut(s) 487, 1653
HindIII AAGCTT 1 cut(s) 1403
HinfI GANTC 6 cut(s) 54, 592, 950, 1048, 1321, 1733
HpaII CCGG 1 cut(s) 1707
HphI GGTGA 1 cut(s) 1652
Hpy166II GTNNAC 3 cut(s) 271, 382, 850
Hpy188I TCNGA 7 cut(s) 400, 412, 597, 657, 989, 1341, 1828
Hpy188III TCNNGA 4 cut(s) 113, 169, 1052, 1316
Hpy8I GTNNAC 3 cut(s) 271, 382, 850
HpyAV CCTTC 6 cut(s) 421, 812, 1523, 1681, 1726, 1739
HpyCH4III ACNGT 3 cut(s) 151, 842, 1480
HpyF10VI GCNNNNNNNGC 5 cut(s) 365, 484, 493, 532, 869
HpyF3I CTNAG 4 cut(s) 654, 662, 918, 1031
Hsp92I GRCGYC 1 cut(s) 1653
HspAI GCGC 2 cut(s) 487, 1653
KasI GGCGCC 1 cut(s) 1652
KpnI GGTACC 1 cut(s) 20
Ksp22I TGATCA 1 cut(s) 883
Kzo9I GATC 9 cut(s) 94, 109, 240, 305, 630, 883, 1312, 1498, 1665
LmnI GCTCC 4 cut(s) 82, 580, 737, 1248
Lsp1109I GCAGC 2 cut(s) 131, 847
LweI GCATC 5 cut(s) 51, 106, 416, 793, 1297
MabI ACCWGGT 1 cut(s) 12
MaeI CTAG 3 cut(s) 479, 539, 1843
MaeIII GTNAC 4 cut(s) 319, 1442, 1640, 1675
MalI GATC 9 cut(s) 96, 111, 242, 307, 632, 885, 1314, 1500, 1667
MboI GATC 9 cut(s) 94, 109, 240, 305, 630, 883, 1312, 1498, 1665
MfeI CAATTG 1 cut(s) 1199
MflI RGATCY 3 cut(s) 94, 630, 1498
MhlI GDGCHC 2 cut(s) 1245, 1478
Mly113I GGCGCC 1 cut(s) 1653
MnlI CCTC 8 cut(s) 73, 276, 557, 838, 1171, 1382, 1404, 1465
MroXI GAANNNNTTC 2 cut(s) 150, 1325
MseI TTAA 2 cut(s) 363, 699
MslI CAYNNNNRTG 2 cut(s) 236, 1067
MspA1I CMGCKG 1 cut(s) 440
MspI CCGG 1 cut(s) 1707
MspR9I CCNGG 2 cut(s) 14, 1707
MunI CAATTG 1 cut(s) 1199
Mva1269I GAATGC 1 cut(s) 919
MvaI CCWGG 1 cut(s) 14
MvnI CGCG 2 cut(s) 91, 1760
MwoI GCNNNNNNNGC 5 cut(s) 365, 484, 493, 532, 869
NarI GGCGCC 1 cut(s) 1653
NciI CCSGG 1 cut(s) 1707
NcoI CCATGG 2 cut(s) 568, 1158
NdeII GATC 9 cut(s) 94, 109, 240, 305, 630, 883, 1312, 1498, 1665
NheI GCTAGC 1 cut(s) 478
NlaIV GGNNCC 4 cut(s) 18, 924, 1477, 1654
NmeAIII GCCGAG 1 cut(s) 1495
NmuCI GTSAC 3 cut(s) 319, 1442, 1640
NspI RCATGY 3 cut(s) 195, 795, 1516
NspV TTCGAA 1 cut(s) 425
OliI CACNNNNGTG 1 cut(s) 1067
PaeI GCATGC 1 cut(s) 1516
PctI GAATGC 1 cut(s) 919
PdmI GAANNNNTTC 2 cut(s) 150, 1325
PfeI GAWTC 6 cut(s) 54, 592, 950, 1048, 1321, 1733
PkrI GCNGC 4 cut(s) 121, 370, 862, 1762
Ple19I CGATCG 1 cut(s) 308
PluTI GGCGCC 1 cut(s) 1656
Psp124BI GAGCTC 1 cut(s) 1245
Psp6I CCWGG 1 cut(s) 12
PspFI CCCAGC 1 cut(s) 470
PspGI CCWGG 1 cut(s) 12
PspN4I GGNNCC 4 cut(s) 18, 924, 1477, 1654
PspPI GGNCC 1 cut(s) 922
PsrI GAACNNNNNNTAC 2 cut(s) 1594, 1626
PsuI RGATCY 3 cut(s) 94, 630, 1498
PvuI CGATCG 1 cut(s) 308
RgaI GCGATCGC 1 cut(s) 308
RsaI GTAC 7 cut(s) 18, 62, 186, 381, 749, 808, 832
RsaNI GTAC 7 cut(s) 17, 61, 185, 380, 748, 807, 831
RseI CAYNNNNRTG 2 cut(s) 236, 1067
SacI GAGCTC 1 cut(s) 1245
SaqAI TTAA 2 cut(s) 363, 699
SatI GCNGC 4 cut(s) 120, 369, 861, 1761
Sau3AI GATC 9 cut(s) 94, 109, 240, 305, 630, 883, 1312, 1498, 1665
Sau96I GGNCC 1 cut(s) 922
ScrFI CCNGG 2 cut(s) 14, 1707
SduI GDGCHC 2 cut(s) 1245, 1478
SexAI ACCWGGT 1 cut(s) 12
SfaAI GCGATCGC 1 cut(s) 308
SfaNI GCATC 5 cut(s) 51, 106, 416, 793, 1297
SfcI CTRYAG 1 cut(s) 1546
SfoI GGCGCC 1 cut(s) 1654
SfuI TTCGAA 1 cut(s) 425
SgfI GCGATCGC 1 cut(s) 308
SmiMI CAYNNNNRTG 2 cut(s) 236, 1067
SmlI CTYRAG 3 cut(s) 1316, 1406, 1771
SmoI CTYRAG 3 cut(s) 1316, 1406, 1771
SphI GCATGC 1 cut(s) 1516
SsiI CCGC 4 cut(s) 89, 369, 440, 1760
SspDI GGCGCC 1 cut(s) 1652
SspI AATATT 2 cut(s) 856, 942
SspMI CTAG 3 cut(s) 479, 539, 1843
SstI GAGCTC 1 cut(s) 1245
StyD4I CCNGG 2 cut(s) 12, 1705
StyI CCWWGG 5 cut(s) 568, 626, 733, 1158, 1764
TaaI ACNGT 3 cut(s) 151, 842, 1480
TaqI TCGA 7 cut(s) 69, 112, 243, 425, 637, 1053, 1668
TatI WGTACW 3 cut(s) 60, 379, 806
TauI GCSGC 2 cut(s) 371, 1763
TfiI GAWTC 6 cut(s) 54, 592, 950, 1048, 1321, 1733
Tru1I TTAA 2 cut(s) 363, 699
Tru9I TTAA 2 cut(s) 363, 699
TscAI CASTG 3 cut(s) 28, 1464, 1626
TseFI GTSAC 3 cut(s) 319, 1442, 1640
TseI GCWGC 2 cut(s) 119, 860
Tsp45I GTSAC 3 cut(s) 319, 1442, 1640
TspDTI ATGAA 6 cut(s) 153, 261, 1271, 1286, 1394, 1434
TspGWI ACGGA 1 cut(s) 1605
TspRI CASTG 3 cut(s) 28, 1464, 1626
XapI RAATTY 2 cut(s) 419, 639
XceI RCATGY 3 cut(s) 195, 795, 1516
XmiI GTMKAC 1 cut(s) 270
XmnI GAANNNNTTC 2 cut(s) 150, 1325
XspI CTAG 3 cut(s) 479, 539, 1843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.