RLG00000026230

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000119
Physical Location & Seq
Forward (+)
1404396 .. 1407197
2802 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026230

Sequence Viewer

Length: 1929 bp
ATGTCTCGGCCTCGCTTTCAAAGGGATGACCCCATTATGCTAAGCATTACACCAGGTATAGATTATGATTTCAACAGTCCTGCGGCTCTACTGCAACATCCATTACGGACACCTGAACCTGGAGAACCTCAAGCAAGCAACAAATGGAAGAGGCCAACACTGGGAATTCTTTCAGTTTCGAACCCATGGAGGAATACGATACTGGGAACTTCATGTGTGATTGCAGTATTATTTGATCCTCTGTTCTTTTACATTCCATACATCAAGGAGAAAGAAAAGTGCATGGGAATCGATAAACAAGTGCAGACTGCAGCTATGGTTTTCCGATCAATCACGGACATCAATTTCCTAGTCCATATCTTCTACCAACTTCTTGAAACTAGCAAATTTGCGGCCTCAAAGATTCTAAGGGATACAAATTCGGATTGGGAATGGAAATCAGTATCCCGAGATCAGATGATTCGGTTTGCAAAGGCATTTTCTGGCAAGTTGTCATGGAGCTGTTTCCTAACCGATAGTCTTGCAGTTCTTCCAATTCCACAACTGCTAATAGTAGCTGTTTTTTTCAAGATGAAAGGCCCTAGATATTTGGAGGATAGAAAGGCTGTGAGTTTCTTTATTCTTGTCCAATATCTTCCAAGGATGTATCGAATTTACATATGGTCCACAGAGATAAGAAAGCATGCTCCTATTTGGCTAAAAGCTGCATTCTATTTATTCATGTACATCATTGCCGGTCATATACTTGGAGCATTTTGGTACTTCTTTTCGATTCTACGAGTAACCTCATGTTGGCATCAGACCTACTGCAAAACTACTCGAGGATGTACAACTACTTATTATTGTGATGATACTGCTTTAATCAATATCCCATTGATTAATGGATCGTGCCCGGTAAGTCCACTAGATCCGGAGAAATTTGATTTCGGAATGTTTAGTGATGGCCTTCAATCTGGTAACACGGGACCGATAAGTTTCTCAGTAAAATTGTCTTACTCTTTGTGGTGGGGCCTTCGAAATCTGAGAGAAATTCTATATCTGCATTCACCAAATTTTGTTATCTCTTATTCCTTTTCCCTTATATTTTCCCTTTTGCCCAAATTCAACTTCATCGTAGCTCTCGGCCTCTGCCAACACCCACCTTCATATTGTGATCTCTTTATGAAACAGCAATGTATGCAGTGGGAGGAGGAAAAGAAAGCGGGAGTCGACAAGTTCCTATCGATGAAGGACGATATAGAACTTTGGATGGAGAGAAATGAACTCCAACAAGACATGAAAATTGAAATCATAAAAGCCGTGAAGAAATTGATTGAAGATGATGTTGGTTTTGATGCTACAAATATGGAGAATCTCTTTTCTTGTCTTCCCTGGTACACCAAAAGATCTCTGCAGCGTATTCTCAGCATGAGTACGATAAGAACAGTACCAATGCTCAAAAATCTGGATGAAGAAGTGTTGAAAATGATATGCGACTATTTGAAGCCTGTGAGCTACTCAGACAATACCATCGTTTTTGGAATGGGAGAACCACTTGATCGCATGGTCTTCATTGCAGAGGGCTTCATGTGGACCTATACGACTGCTGCTGGGAGTGGTGAATCCATGGACACCAACTTCCTAAAGAAAGGTGATTCTTATGGAAAAGAGCTTCTGCGGTTTGCACAAGGATCATCTACGAACCAACTTCCTACCGCGGCTGCAAATGTCAGATGTCACTCAAATGTAGATGCCTTCGTTCTCACGGCCAAGGACTTGAGAAGCATAGTAAGTATGTGCGAAAAATGGTGGCCTTTCGACTACAATGCTTCTCAAGATGATGCTGCGGGCCAGTTGGCGCCACTGCCACGGCCCTTTCCACAACCAAGGAGACGTACATCAACTTCATCGACCCCACCCGCTACAGATAGTGGTGTGAACTCGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

643

Amino Acids

73.61

Weight (kDa)

8.46

Isoelectric Point (pI)

48.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1837
AccI GTMKAC 1 cut(s) 1209
AccII CGCG 1 cut(s) 1697
AccIII TCCGGA 1 cut(s) 910
AciI CCGC 8 cut(s) 83, 392, 1202, 1657, 1695, 1697, 1826, 1899
AclWI GGATC 4 cut(s) 230, 892, 902, 1678
AcoI YGGCCR 1 cut(s) 1746
AcsI RAATTY 8 cut(s) 165, 386, 418, 651, 917, 1029, 1051, 1100
AcyI GRCGYC 1 cut(s) 1838
AfaI GTAC 7 cut(s) 725, 761, 829, 1376, 1414, 1428, 1876
AfiI CCNNNNNNNGG 3 cut(s) 119, 161, 792
AjnI CCWGG 3 cut(s) 52, 118, 1370
AjuI GAANNNNNNNTTGG 4 cut(s) 1091, 1123, 1308, 1340
AluBI AGCT 7 cut(s) 314, 501, 557, 704, 1118, 1494, 1651
AluI AGCT 7 cut(s) 314, 501, 557, 704, 1118, 1494, 1651
Alw26I GTCTC 2 cut(s) 9, 1864
AlwI GGATC 4 cut(s) 230, 892, 902, 1678
Ama87I CYCGRG 2 cut(s) 447, 819
Aor13HI TCCGGA 1 cut(s) 910
ApeKI GCWGC 6 cut(s) 311, 704, 1393, 1586, 1700, 1823
ApoI RAATTY 8 cut(s) 165, 386, 418, 651, 917, 1029, 1051, 1100
AseI ATTAAT 1 cut(s) 879
Asp700I GAANNNNTTC 1 cut(s) 169
AspLEI GCGC 1 cut(s) 1840
AspS9I GGNCC 7 cut(s) 578, 663, 965, 1009, 1572, 1828, 1851
AsuC2I CCSGG 1 cut(s) 893
AsuHPI GGTGA 3 cut(s) 1038, 1610, 1643
AsuII TTCGAA 2 cut(s) 179, 1015
AvaI CYCGRG 2 cut(s) 447, 819
AvaII GGWCC 3 cut(s) 663, 965, 1572
BaeGI GKGCMC 1 cut(s) 893
BanI GGYRCC 1 cut(s) 1837
BarI GAAGNNNNNNTAC 2 cut(s) 1867, 1899
BbsI GAAGAC 2 cut(s) 1358, 1540
BbvI GCAGC 6 cut(s) 323, 691, 1405, 1573, 1687, 1810
BccI CCATC 3 cut(s) 935, 1243, 1517
BceAI ACGGC 3 cut(s) 1283, 1761, 1865
BcgI CGANNNNNNTGC 6 cut(s) 271, 305, 503, 537, 1787, 1821
BciT130I CCWGG 3 cut(s) 54, 120, 1372
BciVI GTATCC 2 cut(s) 406, 454
BcnI CCSGG 1 cut(s) 893
BcoDI GTCTC 2 cut(s) 9, 1864
BfaI CTAG 4 cut(s) 350, 381, 582, 905
BfmI CTRYAG 3 cut(s) 309, 1391, 1902
BfoI RGCGCY 1 cut(s) 1841
BfuI GTATCC 2 cut(s) 406, 454
BglII AGATCT 1 cut(s) 1385
BisI GCNGC 9 cut(s) 84, 312, 393, 705, 1394, 1587, 1698, 1701, 1824
BlpI GCTNAGC 1 cut(s) 41
BlsI GCNGC 9 cut(s) 85, 313, 394, 706, 1395, 1588, 1699, 1702, 1825
Bme1390I CCNGG 4 cut(s) 54, 120, 893, 1372
Bme18I GGWCC 3 cut(s) 663, 965, 1572
BmeT110I CYCGRG 2 cut(s) 447, 819
BmgT120I GGNCC 7 cut(s) 578, 663, 965, 1009, 1572, 1828, 1851
BmiI GGNNCC 3 cut(s) 966, 1010, 1839
BmrFI CCNGG 4 cut(s) 54, 120, 893, 1372
BmrI ACTGGG 2 cut(s) 170, 212
BmsI GCATC 4 cut(s) 805, 1324, 1720, 1810
BmuI ACTGGG 2 cut(s) 170, 212
BpiI GAAGAC 2 cut(s) 1358, 1540
BpmI CTGGAG 1 cut(s) 141
Bpu1102I GCTNAGC 1 cut(s) 41
Bpu14I TTCGAA 2 cut(s) 179, 1015
BpuEI CTTGAG 3 cut(s) 114, 1777, 1797
BpuMI CCSGG 1 cut(s) 893
Bsa29I ATCGAT 2 cut(s) 291, 1223
BsaHI GRCGYC 1 cut(s) 1838
BsaJI CCNNGG 8 cut(s) 185, 638, 1370, 1605, 1695, 1749, 1847, 1865
BsaWI WCCGGW 1 cut(s) 910
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 161, 792
Bse118I RCCGGY 1 cut(s) 734
Bse1I ACTGG 3 cut(s) 165, 207, 1831
Bse3DI GCAATG 3 cut(s) 729, 1178, 1551
BseAI TCCGGA 1 cut(s) 910
BseBI CCWGG 3 cut(s) 54, 120, 1372
BseCI ATCGAT 2 cut(s) 291, 1223
BseDI CCNNGG 8 cut(s) 185, 638, 1370, 1605, 1695, 1749, 1847, 1865
BseGI GGATG 6 cut(s) 31, 97, 648, 830, 1254, 1453
BseLI CCNNNNNNNGG 3 cut(s) 119, 161, 792
BseMI GCAATG 3 cut(s) 729, 1178, 1551
BseMII CTCAG 4 cut(s) 993, 1013, 1417, 1512
BseNI ACTGG 3 cut(s) 165, 207, 1831
BseRI GAGGAG 1 cut(s) 1202
BseSI GKGCMC 1 cut(s) 893
BseXI GCAGC 6 cut(s) 323, 691, 1405, 1573, 1687, 1810
BseYI CCCAGC 1 cut(s) 1589
BsgI GTGCAG 1 cut(s) 323
Bsh1236I CGCG 1 cut(s) 1697
BshNI GGYRCC 1 cut(s) 1837
BshVI ATCGAT 2 cut(s) 291, 1223
BsiHKCI CYCGRG 2 cut(s) 447, 819
BsiSI CCGG 3 cut(s) 735, 893, 911
BslFI GGGAC 1 cut(s) 978
BslI CCNNNNNNNGG 3 cut(s) 119, 161, 792
BsmAI GTCTC 2 cut(s) 9, 1864
BsmBI CGTCTC 1 cut(s) 1864
BsmFI GGGAC 1 cut(s) 978
BsmI GAATGC 2 cut(s) 707, 1042
BsoBI CYCGRG 2 cut(s) 447, 819
Bsp119I TTCGAA 2 cut(s) 179, 1015
Bsp1286I GDGCHC 1 cut(s) 893
Bsp13I TCCGGA 1 cut(s) 910
Bsp1407I TGTACA 2 cut(s) 723, 827
Bsp143I GATC 9 cut(s) 235, 326, 451, 884, 907, 1153, 1385, 1537, 1670
Bsp1720I GCTNAGC 1 cut(s) 41
Bsp19I CCATGG 2 cut(s) 185, 1605
BspACI CCGC 8 cut(s) 83, 392, 1202, 1657, 1695, 1697, 1826, 1899
BspCNI CTCAG 4 cut(s) 992, 1014, 1416, 1511
BspDI ATCGAT 2 cut(s) 291, 1223
BspEI TCCGGA 1 cut(s) 910
BspFNI CGCG 1 cut(s) 1697
BspLI GGNNCC 3 cut(s) 966, 1010, 1839
BspMAI CTGCAG 2 cut(s) 313, 1395
BspPI GGATC 4 cut(s) 230, 892, 902, 1678
BspT104I TTCGAA 2 cut(s) 179, 1015
BspT107I GGYRCC 1 cut(s) 1837
BsrDI GCAATG 3 cut(s) 729, 1178, 1551
BsrFI RCCGGY 1 cut(s) 734
BsrGI TGTACA 2 cut(s) 723, 827
BsrI ACTGG 3 cut(s) 165, 207, 1831
BssAI RCCGGY 1 cut(s) 734
BssECI CCNNGG 8 cut(s) 185, 638, 1370, 1605, 1695, 1749, 1847, 1865
BssMI GATC 9 cut(s) 235, 326, 451, 884, 907, 1153, 1385, 1537, 1670
BssNI GRCGYC 1 cut(s) 1838
BssT1I CCWWGG 5 cut(s) 185, 638, 1605, 1749, 1865
Bst2UI CCWGG 3 cut(s) 54, 120, 1372
Bst4CI ACNGT 2 cut(s) 77, 1426
Bst6I CTCTTC 1 cut(s) 143
BstACI GRCGYC 1 cut(s) 1838
BstAPI GCANNNNNTGC 1 cut(s) 1177
BstAUI TGTACA 2 cut(s) 723, 827
BstBI TTCGAA 2 cut(s) 179, 1015
BstC8I GCNNGC 3 cut(s) 136, 684, 1828
BstDEI CTNAG 6 cut(s) 41, 407, 979, 1022, 1403, 1498
BstDSI CCRYGG 4 cut(s) 185, 1605, 1695, 1847
BstF5I GGATG 6 cut(s) 31, 97, 648, 830, 1254, 1453
BstFNI CGCG 1 cut(s) 1697
BstH2I RGCGCY 1 cut(s) 1841
BstHHI GCGC 1 cut(s) 1840
BstKTI GATC 9 cut(s) 238, 329, 454, 887, 910, 1156, 1388, 1540, 1673
BstMAI GTCTC 2 cut(s) 9, 1864
BstMBI GATC 9 cut(s) 235, 326, 451, 884, 907, 1153, 1385, 1537, 1670
BstMWI GCNNNNNNNGC 1 cut(s) 1177
BstNI CCWGG 3 cut(s) 54, 120, 1372
BstNSI RCATGY 1 cut(s) 686
BstSCI CCNGG 4 cut(s) 52, 118, 891, 1370
BstSFI CTRYAG 3 cut(s) 309, 1391, 1902
BstSLI GKGCMC 1 cut(s) 893
BstUI CGCG 1 cut(s) 1697
BstV1I GCAGC 6 cut(s) 323, 691, 1405, 1573, 1687, 1810
BstV2I GAAGAC 2 cut(s) 1358, 1540
BstX2I RGATCY 2 cut(s) 907, 1385
BstYI RGATCY 2 cut(s) 907, 1385
Bsu15I ATCGAT 2 cut(s) 291, 1223
BsuI GTATCC 2 cut(s) 406, 454
BsuTUI ATCGAT 2 cut(s) 291, 1223
BtgI CCRYGG 4 cut(s) 185, 1605, 1695, 1847
BtsCI GGATG 6 cut(s) 31, 97, 648, 830, 1254, 1453
BtsI GCAGTG 2 cut(s) 1187, 1841
BtsIMutI CAGTG 3 cut(s) 158, 1187, 1841
Cac8I GCNNGC 3 cut(s) 136, 684, 1828
CfoI GCGC 1 cut(s) 1840
Cfr10I RCCGGY 1 cut(s) 734
Cfr13I GGNCC 7 cut(s) 578, 663, 965, 1009, 1572, 1828, 1851
Cfr42I CCGCGG 1 cut(s) 1698
ClaI ATCGAT 2 cut(s) 291, 1223
CsiI ACCWGGT 1 cut(s) 52
Csp6I GTAC 7 cut(s) 724, 760, 828, 1375, 1413, 1427, 1875
CviQI GTAC 7 cut(s) 724, 760, 828, 1375, 1413, 1427, 1875
DdeI CTNAG 6 cut(s) 41, 407, 979, 1022, 1403, 1498
DinI GGCGCC 1 cut(s) 1839
DpnI GATC 9 cut(s) 237, 328, 453, 886, 909, 1155, 1387, 1539, 1672
DpnII GATC 9 cut(s) 235, 326, 451, 884, 907, 1153, 1385, 1537, 1670
EaeI YGGCCR 1 cut(s) 1746
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco130I CCWWGG 5 cut(s) 185, 638, 1605, 1749, 1865
Eco47I GGWCC 3 cut(s) 663, 965, 1572
Eco88I CYCGRG 2 cut(s) 447, 819
EcoO109I RGGNCCY 2 cut(s) 578, 1009
EcoRI GAATTC 1 cut(s) 165
EcoRII CCWGG 3 cut(s) 52, 118, 1370
EcoT14I CCWWGG 5 cut(s) 185, 638, 1605, 1749, 1865
EgeI GGCGCC 1 cut(s) 1839
EheI GGCGCC 1 cut(s) 1839
ErhI CCWWGG 5 cut(s) 185, 638, 1605, 1749, 1865
Esp3I CGTCTC 1 cut(s) 1864
FaqI GGGAC 1 cut(s) 978
FauI CCCGC 3 cut(s) 1195, 1819, 1906
FauNDI CATATG 1 cut(s) 659
FblI GTMKAC 1 cut(s) 1209
Fnu4HI GCNGC 9 cut(s) 84, 312, 393, 705, 1394, 1587, 1698, 1701, 1824
FokI GGATG 6 cut(s) 38, 84, 655, 837, 1261, 1460
Fsp4HI GCNGC 9 cut(s) 84, 312, 393, 705, 1394, 1587, 1698, 1701, 1824
FspBI CTAG 4 cut(s) 350, 381, 582, 905
GlaI GCGC 1 cut(s) 1839
GluI GCNGC 9 cut(s) 84, 312, 393, 705, 1394, 1587, 1698, 1701, 1824
GsaI CCCAGC 1 cut(s) 1593
GsuI CTGGAG 1 cut(s) 141
HaeII RGCGCY 1 cut(s) 1841
HapII CCGG 3 cut(s) 735, 893, 911
HhaI GCGC 1 cut(s) 1840
Hin1I GRCGYC 1 cut(s) 1838
Hin6I GCGC 1 cut(s) 1838
HinP1I GCGC 1 cut(s) 1838
HincII GTYRAC 1 cut(s) 1210
HindII GTYRAC 1 cut(s) 1210
HinfI GANTC 8 cut(s) 288, 403, 460, 772, 1206, 1351, 1601, 1634
HpaII CCGG 3 cut(s) 735, 893, 911
HphI GGTGA 3 cut(s) 1038, 1610, 1643
Hpy166II GTNNAC 6 cut(s) 666, 902, 1210, 1377, 1572, 1918
Hpy188I TCNGA 8 cut(s) 326, 424, 456, 801, 929, 1023, 1501, 1712
Hpy188III TCNNGA 6 cut(s) 374, 447, 568, 911, 1445, 1814
Hpy8I GTNNAC 6 cut(s) 666, 902, 1210, 1377, 1572, 1918
HpyAV CCTTC 5 cut(s) 956, 1022, 1152, 1222, 1744
HpyCH4III ACNGT 2 cut(s) 77, 1426
HpyCH4IV ACGT 1 cut(s) 1873
HpyF10VI GCNNNNNNNGC 1 cut(s) 1177
HpyF3I CTNAG 6 cut(s) 41, 407, 979, 1022, 1403, 1498
HpySE526I ACGT 1 cut(s) 1873
Hsp92I GRCGYC 1 cut(s) 1838
HspAI GCGC 1 cut(s) 1838
KasI GGCGCC 1 cut(s) 1837
Kpn2I TCCGGA 1 cut(s) 910
KspI CCGCGG 1 cut(s) 1698
Kzo9I GATC 9 cut(s) 235, 326, 451, 884, 907, 1153, 1385, 1537, 1670
LmnI GCTCC 3 cut(s) 498, 691, 749
Lsp1109I GCAGC 6 cut(s) 323, 691, 1405, 1573, 1687, 1810
LweI GCATC 4 cut(s) 805, 1324, 1720, 1810
MabI ACCWGGT 1 cut(s) 52
MaeI CTAG 4 cut(s) 350, 381, 582, 905
MaeII ACGT 1 cut(s) 1873
MaeIII GTNAC 3 cut(s) 781, 956, 1715
MalI GATC 9 cut(s) 237, 328, 453, 886, 909, 1155, 1387, 1539, 1672
MboI GATC 9 cut(s) 235, 326, 451, 884, 907, 1153, 1385, 1537, 1670
MboII GAAGA 9 cut(s) 160, 352, 521, 626, 1315, 1328, 1358, 1463, 1540
MflI RGATCY 2 cut(s) 907, 1385
MhlI GDGCHC 1 cut(s) 893
Mly113I GGCGCC 1 cut(s) 1838
MlyI GAGTC 1 cut(s) 1215
MmeI TCCRAC 1 cut(s) 1291
MroI TCCGGA 1 cut(s) 910
MroXI GAANNNNTTC 1 cut(s) 169
MseI TTAA 2 cut(s) 860, 879
MslI CAYNNNNRTG 1 cut(s) 1722
MspA1I CMGCKG 1 cut(s) 1697
MspI CCGG 3 cut(s) 735, 893, 911
MspR9I CCNGG 4 cut(s) 54, 120, 893, 1372
Mva1269I GAATGC 2 cut(s) 707, 1042
MvaI CCWGG 3 cut(s) 54, 120, 1372
MvnI CGCG 1 cut(s) 1697
MwoI GCNNNNNNNGC 1 cut(s) 1177
NarI GGCGCC 1 cut(s) 1838
NciI CCSGG 1 cut(s) 893
NcoI CCATGG 2 cut(s) 185, 1605
NdeI CATATG 1 cut(s) 659
NdeII GATC 9 cut(s) 235, 326, 451, 884, 907, 1153, 1385, 1537, 1670
NlaIV GGNNCC 3 cut(s) 966, 1010, 1839
NmeAIII GCCGAG 1 cut(s) 1101
NmuCI GTSAC 1 cut(s) 1715
NspI RCATGY 1 cut(s) 686
NspV TTCGAA 2 cut(s) 179, 1015
PaeI GCATGC 1 cut(s) 686
PaeR7I CTCGAG 1 cut(s) 819
PctI GAATGC 2 cut(s) 707, 1042
PdmI GAANNNNTTC 1 cut(s) 169
PfeI GAWTC 7 cut(s) 288, 403, 460, 772, 1351, 1601, 1634
PkrI GCNGC 9 cut(s) 85, 313, 394, 706, 1395, 1588, 1699, 1702, 1825
PleI GAGTC 1 cut(s) 1214
PluTI GGCGCC 1 cut(s) 1841
PpsI GAGTC 1 cut(s) 1214
PshBI ATTAAT 1 cut(s) 879
Psp6I CCWGG 3 cut(s) 52, 118, 1370
PspFI CCCAGC 1 cut(s) 1589
PspGI CCWGG 3 cut(s) 52, 118, 1370
PspN4I GGNNCC 3 cut(s) 966, 1010, 1839
PspPI GGNCC 7 cut(s) 578, 663, 965, 1009, 1572, 1828, 1851
PspXI VCTCGAGB 1 cut(s) 819
PstI CTGCAG 2 cut(s) 313, 1395
PsuI RGATCY 2 cut(s) 907, 1385
RsaI GTAC 7 cut(s) 725, 761, 829, 1376, 1414, 1428, 1876
RsaNI GTAC 7 cut(s) 724, 760, 828, 1375, 1413, 1427, 1875
RseI CAYNNNNRTG 1 cut(s) 1722
SacII CCGCGG 1 cut(s) 1698
SalI GTCGAC 1 cut(s) 1208
SaqAI TTAA 2 cut(s) 860, 879
SatI GCNGC 9 cut(s) 84, 312, 393, 705, 1394, 1587, 1698, 1701, 1824
Sau3AI GATC 9 cut(s) 235, 326, 451, 884, 907, 1153, 1385, 1537, 1670
Sau96I GGNCC 7 cut(s) 578, 663, 965, 1009, 1572, 1828, 1851
SchI GAGTC 1 cut(s) 1215
ScrFI CCNGG 4 cut(s) 54, 120, 893, 1372
SduI GDGCHC 1 cut(s) 893
SexAI ACCWGGT 1 cut(s) 52
SfaNI GCATC 4 cut(s) 805, 1324, 1720, 1810
SfcI CTRYAG 3 cut(s) 309, 1391, 1902
SfoI GGCGCC 1 cut(s) 1839
Sfr274I CTCGAG 1 cut(s) 819
Sfr303I CCGCGG 1 cut(s) 1698
SfuI TTCGAA 2 cut(s) 179, 1015
SgrBI CCGCGG 1 cut(s) 1698
SinI GGWCC 3 cut(s) 663, 965, 1572
SlaI CTCGAG 1 cut(s) 819
SmiMI CAYNNNNRTG 1 cut(s) 1722
SmlI CTYRAG 4 cut(s) 129, 819, 1756, 1812
SmoI CTYRAG 4 cut(s) 129, 819, 1756, 1812
SphI GCATGC 1 cut(s) 686
SsiI CCGC 8 cut(s) 83, 392, 1202, 1657, 1695, 1697, 1826, 1899
SspDI GGCGCC 1 cut(s) 1837
SspMI CTAG 4 cut(s) 350, 381, 582, 905
StyD4I CCNGG 4 cut(s) 52, 118, 891, 1370
StyI CCWWGG 5 cut(s) 185, 638, 1605, 1749, 1865
TaaI ACNGT 2 cut(s) 77, 1426
TaiI ACGT 1 cut(s) 1876
TaqII GACCGA 1 cut(s) 982
TatI WGTACW 2 cut(s) 723, 827
TauI GCSGC 3 cut(s) 86, 395, 1700
TfiI GAWTC 7 cut(s) 288, 403, 460, 772, 1351, 1601, 1634
Tru1I TTAA 2 cut(s) 860, 879
Tru9I TTAA 2 cut(s) 860, 879
TscAI CASTG 3 cut(s) 165, 1187, 1848
TseFI GTSAC 1 cut(s) 1715
TseI GCWGC 6 cut(s) 311, 704, 1393, 1586, 1700, 1823
Tsp45I GTSAC 1 cut(s) 1715
TspGWI ACGGA 2 cut(s) 121, 350
TspRI CASTG 3 cut(s) 165, 1187, 1848
VpaK11BI GGWCC 3 cut(s) 663, 965, 1572
VspI ATTAAT 1 cut(s) 879
XapI RAATTY 8 cut(s) 165, 386, 418, 651, 917, 1029, 1051, 1100
XceI RCATGY 1 cut(s) 686
XhoI CTCGAG 1 cut(s) 819
XmiI GTMKAC 1 cut(s) 1209
XmnI GAANNNNTTC 1 cut(s) 169
XspI CTAG 4 cut(s) 350, 381, 582, 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.