Rh5CG139600

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000119
Physical Location & Seq
Reverse (-)
12136420 .. 12142180
5761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG139600.1

Sequence Viewer

Length: 774 bp
ATGTCTAACAACCAGGTACCCAGTGATGTCCCTATGATGAGCATCACACGGGGAATCAAGTACAATTTCGACAATGTTGAGGAGCAACCGCGAGATCCCCCGTGGAGTGATCGAGATGCAGCTTCAACAAAACAAAAATTGGAAGAAACAGTTCTTTCAGTTTCATTCTGGAATAAGATGTTCGTACTTGCATGTGTGATTGCAGTCTCATTAGACCCGTTGTTCTTCTACATTCCAATGATCGATGAAGAAGAAAAGTGCCTTGCAGTAGACAAAGAGTTGAGGACTATAACTCTCATTTTGCGATCGCTTACTGATGTCACTTTCGTAGTGAATATCATATATCATGTTTGCAAAGCCATTAACGCCGCCTACAAAGTACACAAAGGAAAAAAGTCTGAATTGGCATCTGATTGGGAATTTTCGAAGGTATCAACAGCGGAGATAATTCCATTTGCTAAATTAGTTGCTGGGAAGCTAGCATGGCGCTCTACGCTAACCAGCATTTTAGCTGTTTTCCCCATGCCACAACTGCTTCTAGTATTTGTCTTCTTCAAAATGAGAGGCCATGGATACTTGGAGCGTAGAAAGATTCTGAATGTCTTTCTTCTCGCTCAATATCTGCCAAGGATCTATCGAATTTACCTATCATCTCAGAAACTTAGACAAACTACTGGAATATGGGCTAAAGCTCTGTTTAATTTTTTTCTATATATACTTGCAAGTCATGTAAGTCTAATTCTCATCATATCGCTTCATTTTATTAATCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

257

Amino Acids

29.59

Weight (kDa)

9.35

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 16
AccB1I GGYRCC 1 cut(s) 16
AccI GTMKAC 1 cut(s) 270
AccII CGCG 1 cut(s) 91
AciI CCGC 3 cut(s) 89, 369, 440
AclWI GGATC 2 cut(s) 89, 638
AcsI RAATTY 2 cut(s) 419, 639
AfaI GTAC 4 cut(s) 18, 62, 186, 381
AgsI TTSAA 2 cut(s) 126, 556
AjnI CCWGG 1 cut(s) 12
AluBI AGCT 4 cut(s) 122, 478, 512, 692
AluI AGCT 4 cut(s) 122, 478, 512, 692
Alw26I GTCTC 1 cut(s) 211
AlwI GGATC 2 cut(s) 89, 638
AoxI GGCC 1 cut(s) 565
ApeKI GCWGC 1 cut(s) 119
ApoI RAATTY 2 cut(s) 419, 639
AseI ATTAAT 1 cut(s) 765
AsiSI GCGATCGC 1 cut(s) 308
Asp700I GAANNNNTTC 1 cut(s) 150
Asp718I GGTACC 1 cut(s) 16
AspLEI GCGC 1 cut(s) 489
AsuII TTCGAA 1 cut(s) 425
AsuNHI GCTAGC 1 cut(s) 478
BanI GGYRCC 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 541
BbvI GCAGC 1 cut(s) 131
BciT130I CCWGG 1 cut(s) 14
BciVI GTATCC 1 cut(s) 566
BcoDI GTCTC 1 cut(s) 211
BfaI CTAG 2 cut(s) 479, 539
BfoI RGCGCY 1 cut(s) 490
BfuI GTATCC 1 cut(s) 566
BisI GCNGC 2 cut(s) 120, 369
BlsI GCNGC 2 cut(s) 121, 370
Bme1390I CCNGG 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 14
BmrI ACTGGG 1 cut(s) 15
BmsI GCATC 3 cut(s) 51, 106, 416
BmtI GCTAGC 1 cut(s) 482
BmuI ACTGGG 1 cut(s) 15
BpiI GAAGAC 1 cut(s) 541
Bpu14I TTCGAA 1 cut(s) 425
Bsa29I ATCGAT 1 cut(s) 243
BsaBI GATNNNNATC 1 cut(s) 41
BsaJI CCNNGG 3 cut(s) 101, 568, 626
Bse1I ACTGG 2 cut(s) 21, 679
Bse8I GATNNNNATC 1 cut(s) 41
BseBI CCWGG 1 cut(s) 14
BseCI ATCGAT 1 cut(s) 243
BseDI CCNNGG 3 cut(s) 101, 568, 626
BseJI GATNNNNATC 1 cut(s) 41
BseMII CTCAG 1 cut(s) 668
BseNI ACTGG 2 cut(s) 21, 679
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 131
BseYI CCCAGC 1 cut(s) 470
Bsh1236I CGCG 1 cut(s) 91
Bsh1285I CGRYCG 1 cut(s) 308
BshFI GGCC 1 cut(s) 567
BshNI GGYRCC 1 cut(s) 16
BshVI ATCGAT 1 cut(s) 243
BsiEI CGRYCG 1 cut(s) 308
BslFI GGGAC 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 211
BsmFI GGGAC 1 cut(s) 14
BsnI GGCC 1 cut(s) 567
Bsp119I TTCGAA 1 cut(s) 425
Bsp143I GATC 5 cut(s) 94, 109, 240, 305, 630
Bsp19I CCATGG 1 cut(s) 568
BspACI CCGC 3 cut(s) 89, 369, 440
BspANI GGCC 1 cut(s) 567
BspCNI CTCAG 1 cut(s) 667
BspDI ATCGAT 1 cut(s) 243
BspFNI CGCG 1 cut(s) 91
BspLI GGNNCC 1 cut(s) 18
BspOI GCTAGC 1 cut(s) 482
BspPI GGATC 2 cut(s) 89, 638
BspT104I TTCGAA 1 cut(s) 425
BspT107I GGYRCC 1 cut(s) 16
BsrI ACTGG 2 cut(s) 21, 679
BssECI CCNNGG 3 cut(s) 101, 568, 626
BssMI GATC 5 cut(s) 94, 109, 240, 305, 630
BssT1I CCWWGG 2 cut(s) 568, 626
Bst2UI CCWGG 1 cut(s) 14
Bst4CI ACNGT 1 cut(s) 151
BstBI TTCGAA 1 cut(s) 425
BstC8I GCNNGC 1 cut(s) 480
BstDEI CTNAG 2 cut(s) 654, 662
BstDSI CCRYGG 2 cut(s) 101, 568
BstFNI CGCG 1 cut(s) 91
BstH2I RGCGCY 1 cut(s) 490
BstHHI GCGC 1 cut(s) 489
BstKTI GATC 5 cut(s) 97, 112, 243, 308, 633
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 5 cut(s) 94, 109, 240, 305, 630
BstMCI CGRYCG 1 cut(s) 308
BstMWI GCNNNNNNNGC 4 cut(s) 365, 484, 493, 532
BstNI CCWGG 1 cut(s) 14
BstNSI RCATGY 1 cut(s) 195
BstSCI CCNGG 1 cut(s) 12
BstUI CGCG 1 cut(s) 91
BstV1I GCAGC 1 cut(s) 131
BstV2I GAAGAC 1 cut(s) 541
BstX2I RGATCY 2 cut(s) 94, 630
BstYI RGATCY 2 cut(s) 94, 630
Bsu15I ATCGAT 1 cut(s) 243
BsuI GTATCC 1 cut(s) 566
BsuRI GGCC 1 cut(s) 567
BsuTUI ATCGAT 1 cut(s) 243
BtgI CCRYGG 2 cut(s) 101, 568
BtsIMutI CAGTG 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 480
CfoI GCGC 1 cut(s) 489
ClaI ATCGAT 1 cut(s) 243
CsiI ACCWGGT 1 cut(s) 12
Csp6I GTAC 4 cut(s) 17, 61, 185, 380
CviAII CATG 6 cut(s) 192, 347, 483, 523, 569, 728
CviJI RGCY 7 cut(s) 122, 359, 478, 512, 567, 686, 692
CviKI_1 RGCY 7 cut(s) 122, 359, 478, 512, 567, 686, 692
CviQI GTAC 4 cut(s) 17, 61, 185, 380
DdeI CTNAG 2 cut(s) 654, 662
DpnI GATC 5 cut(s) 96, 111, 242, 307, 632
DpnII GATC 5 cut(s) 94, 109, 240, 305, 630
Eco130I CCWWGG 2 cut(s) 568, 626
EcoRII CCWGG 1 cut(s) 12
EcoT14I CCWWGG 2 cut(s) 568, 626
ErhI CCWWGG 2 cut(s) 568, 626
FaeI CATG 6 cut(s) 195, 350, 486, 526, 572, 731
FaqI GGGAC 1 cut(s) 14
FatI CATG 6 cut(s) 191, 346, 482, 522, 568, 727
FblI GTMKAC 1 cut(s) 270
Fnu4HI GCNGC 2 cut(s) 120, 369
Fsp4HI GCNGC 2 cut(s) 120, 369
FspBI CTAG 2 cut(s) 479, 539
GlaI GCGC 1 cut(s) 488
GluI GCNGC 2 cut(s) 120, 369
GsaI CCCAGC 1 cut(s) 474
HaeII RGCGCY 1 cut(s) 490
HaeIII GGCC 1 cut(s) 567
HhaI GCGC 1 cut(s) 489
Hin1II CATG 6 cut(s) 195, 350, 486, 526, 572, 731
Hin6I GCGC 1 cut(s) 487
HinP1I GCGC 1 cut(s) 487
HinfI GANTC 2 cut(s) 54, 592
Hpy166II GTNNAC 2 cut(s) 271, 382
Hpy188I TCNGA 4 cut(s) 400, 412, 597, 657
Hpy188III TCNNGA 2 cut(s) 113, 169
Hpy8I GTNNAC 2 cut(s) 271, 382
HpyAV CCTTC 1 cut(s) 421
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 6 cut(s) 119, 191, 203, 266, 354, 722
HpyF10VI GCNNNNNNNGC 4 cut(s) 365, 484, 493, 532
HpyF3I CTNAG 2 cut(s) 654, 662
Hsp92II CATG 6 cut(s) 195, 350, 486, 526, 572, 731
HspAI GCGC 1 cut(s) 487
KpnI GGTACC 1 cut(s) 20
Kzo9I GATC 5 cut(s) 94, 109, 240, 305, 630
LmnI GCTCC 2 cut(s) 82, 580
LpnPI CCDG 6 cut(s) 26, 34, 154, 456, 514, 660
Lsp1109I GCAGC 1 cut(s) 131
LweI GCATC 3 cut(s) 51, 106, 416
MabI ACCWGGT 1 cut(s) 12
MaeI CTAG 2 cut(s) 479, 539
MaeIII GTNAC 1 cut(s) 319
MalI GATC 5 cut(s) 96, 111, 242, 307, 632
MboI GATC 5 cut(s) 94, 109, 240, 305, 630
MboII GAAGA 7 cut(s) 155, 217, 260, 263, 541, 544, 599
MflI RGATCY 2 cut(s) 94, 630
MluCI AATT 9 cut(s) 64, 137, 401, 419, 447, 461, 639, 700, 738
MnlI CCTC 3 cut(s) 73, 276, 557
MroXI GAANNNNTTC 1 cut(s) 150
MseI TTAA 3 cut(s) 363, 699, 765
MslI CAYNNNNRTG 1 cut(s) 236
MspA1I CMGCKG 1 cut(s) 440
MspR9I CCNGG 1 cut(s) 14
MvaI CCWGG 1 cut(s) 14
MvnI CGCG 1 cut(s) 91
MwoI GCNNNNNNNGC 4 cut(s) 365, 484, 493, 532
NcoI CCATGG 1 cut(s) 568
NdeII GATC 5 cut(s) 94, 109, 240, 305, 630
NheI GCTAGC 1 cut(s) 478
NlaIII CATG 6 cut(s) 195, 350, 486, 526, 572, 731
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 1 cut(s) 319
NspI RCATGY 1 cut(s) 195
NspV TTCGAA 1 cut(s) 425
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 2 cut(s) 54, 592
PkrI GCNGC 2 cut(s) 121, 370
Ple19I CGATCG 1 cut(s) 308
PshBI ATTAAT 1 cut(s) 765
Psp6I CCWGG 1 cut(s) 12
PspFI CCCAGC 1 cut(s) 470
PspGI CCWGG 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 18
PsuI RGATCY 2 cut(s) 94, 630
PvuI CGATCG 1 cut(s) 308
RgaI GCGATCGC 1 cut(s) 308
RsaI GTAC 4 cut(s) 18, 62, 186, 381
RsaNI GTAC 4 cut(s) 17, 61, 185, 380
RseI CAYNNNNRTG 1 cut(s) 236
SaqAI TTAA 3 cut(s) 363, 699, 765
SatI GCNGC 2 cut(s) 120, 369
Sau3AI GATC 5 cut(s) 94, 109, 240, 305, 630
ScrFI CCNGG 1 cut(s) 14
SetI ASST 7 cut(s) 18, 124, 432, 480, 514, 648, 694
SexAI ACCWGGT 1 cut(s) 12
SfaAI GCGATCGC 1 cut(s) 308
SfaNI GCATC 3 cut(s) 51, 106, 416
SfuI TTCGAA 1 cut(s) 425
SgfI GCGATCGC 1 cut(s) 308
SmiMI CAYNNNNRTG 1 cut(s) 236
Sse9I AATT 9 cut(s) 64, 137, 401, 419, 447, 461, 639, 700, 738
SsiI CCGC 3 cut(s) 89, 369, 440
SspMI CTAG 2 cut(s) 479, 539
StyD4I CCNGG 1 cut(s) 12
StyI CCWWGG 2 cut(s) 568, 626
TaaI ACNGT 1 cut(s) 151
TaqI TCGA 5 cut(s) 69, 112, 243, 425, 637
TasI AATT 9 cut(s) 64, 137, 401, 419, 447, 461, 639, 700, 738
TatI WGTACW 2 cut(s) 60, 379
TauI GCSGC 1 cut(s) 371
TfiI GAWTC 2 cut(s) 54, 592
Tru1I TTAA 3 cut(s) 363, 699, 765
Tru9I TTAA 3 cut(s) 363, 699, 765
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 3 cut(s) 153, 261, 746
TspRI CASTG 1 cut(s) 28
VspI ATTAAT 1 cut(s) 765
XapI RAATTY 2 cut(s) 419, 639
XceI RCATGY 1 cut(s) 195
XmiI GTMKAC 1 cut(s) 270
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 2 cut(s) 479, 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.