Rmu_sc0006872.1_g000001

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006872.1
OG0000119
Physical Location & Seq
Reverse (-)
10 .. 2648
2639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006872.1_g000001.1.cds

Sequence Viewer

Length: 1851 bp
atggatgaagccccagaagtaagtctcacaggtgacactactcattatggatatggtcggaaaccatcagaaatgaaaaaaacgaaaaggagatttagttcgtggtggactagcttttcggttcgaggttcatggtgggattcgatatttgtagcctcgtgtgttatcgcagtctcactggatccattgttcttttacattcctatcatcgatagggaaaagaagtgccttgaagcagacataaaactgaggaacgtaactcttcttttgcgatcactcatggatatcacttttatagtgcatattatctatcaaattcgtgaagctatgattgctgcagcctcggataagatggctacccaggaagaatcgaaatttttatgtttctttgaatatgttgatgcaatagttgacaatttgtcactgcgctctctcataactgacattctagctgttcttcctatcccacaggtgctactacttgttgtcttcttcaaaatgagaggctctggatatttggaccacaggaagattttgaacttctttcttctcgctcaatatttggcaagaatttatcgtatgcacctatcttcgaaaaaacttacaaagagtcatggaatatggattaaaggactattcaatttctttctctatatctttgcaagtcacgtacttggagccttttggtatttcttttcgattcaacgagagacatcatgttggcatcgaagttgtggtcacaactgtacaagtaccttttattgtgatgagtacaaacattcagacgatatggtgacacttataacatctctgaatgcatcgtgccctatcaatgctactggaccatttgattttggaatatttcttgattctctgatgtctaataacacggcatcaaccaactttccacaaaagttgtgttactctttctggtggggtctacgaaatttgagtaattttggcacgaatcttgtaacaagtaactatgtatgggagaatttattcgcaattcttatttctatcattggcttgttactgtttttgtacctcatcggaaatgtgcagacatttatgtctatggaaactgagaagtcagaggagataagaaggaagatcaaatcaaaagagcaagatatgaaagtgtggatggagaaaaactgcctccctgctaatttgaggaaagaaatcatggcaaatataagagaaaaattagaacaagacaagcatgctgacatggagaatctgttctccattcttccctggtcaaccaaaaaatctctaaagcgtgttctctgcatgagtactctgagaaaagtaccaatgcttgaaggtatgaatccaaaagttttgaaaatgatatgtgactatctgaagcctgtgatataccctgagcatagctatgttgccaaggtggatgaaccagttgatcggatggtgcttgtcaccgaaggaactatgtggatctactcgtcgaatactagtactccatctaagatccacaggacggttgagaacggtgacatttatggagatgaacaacttctgagttgggtgtcggaggacatgcaaagcgtctcgtttgaaaccgtcccgatctcaaaagaaaatgtgaaatgtcatacaagagtggaagggtttgctatcacggccaaggacttgaaagcagtcgccaccaagtgcaaaatgtattggaattacgatgatcctcgagagaaggagagggtggcgagctctaccataggaacgtcattccgtcgaaaccgcaataacccaaatagaccggctaccgtaggagtaggagctgcgacctcgccaagaacacgaattgagtatctgcagaagagaacctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

616

Amino Acids

71.2

Weight (kDa)

8.95

Isoelectric Point (pI)

41.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 803
AasI GACNNNNNNGTC 1 cut(s) 1072
AccI GTMKAC 1 cut(s) 940
AciI CCGC 1 cut(s) 1762
AclWI GGATC 5 cut(s) 176, 189, 1469, 1489, 1697
AcoI YGGCCR 1 cut(s) 1647
AcsI RAATTY 5 cut(s) 315, 374, 570, 946, 997
AcuI CTGAAG 1 cut(s) 1391
AdeI CACNNNGTG 1 cut(s) 1677
AfaI GTAC 8 cut(s) 672, 748, 754, 773, 1046, 1303, 1317, 1483
AfiI CCNNNNNNNGG 1 cut(s) 1504
AhdI GACNNNNNGTC 1 cut(s) 418
AhlI ACTAGT 1 cut(s) 1478
AjnI CCWGG 2 cut(s) 360, 1259
AloI GAACNNNNNNTCC 6 cut(s) 82, 114, 173, 205, 1229, 1261
AluBI AGCT 6 cut(s) 114, 326, 452, 1398, 1731, 1802
AluI AGCT 6 cut(s) 114, 326, 452, 1398, 1731, 1802
Alw21I GWGCWC 1 cut(s) 1733
Alw26I GTCTC 4 cut(s) 29, 178, 704, 1579
AlwI GGATC 5 cut(s) 176, 189, 1469, 1489, 1697
Ama87I CYCGRG 1 cut(s) 1707
AoxI GGCC 1 cut(s) 1647
ApeKI GCWGC 3 cut(s) 335, 338, 1802
ApoI RAATTY 5 cut(s) 315, 374, 570, 946, 997
ArsI GACNNNNNNTTYG 4 cut(s) 100, 132, 721, 753
Asp700I GAANNNNTTC 3 cut(s) 1001, 1244, 1539
AspLEI GCGC 1 cut(s) 429
AspS9I GGNCC 2 cut(s) 520, 842
AsuHPI GGTGA 4 cut(s) 44, 805, 1435, 1529
AsuII TTCGAA 1 cut(s) 593
AvaI CYCGRG 1 cut(s) 1707
AvaII GGWCC 2 cut(s) 520, 842
BaeGI GKGCMC 1 cut(s) 827
BamHI GGATCC 1 cut(s) 181
BanII GRGCYC 1 cut(s) 1733
BauI CACGAG 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 481
Bbv12I GWGCWC 1 cut(s) 1733
BbvI GCAGC 3 cut(s) 322, 350, 1789
BccI CCATC 5 cut(s) 73, 346, 1141, 1426, 1495
BceAI ACGGC 2 cut(s) 906, 1662
BciT130I CCWGG 2 cut(s) 362, 1261
BcoDI GTCTC 4 cut(s) 29, 178, 704, 1579
BcuI ACTAGT 1 cut(s) 1478
BfaI CTAG 3 cut(s) 111, 449, 1479
BfmI CTRYAG 2 cut(s) 336, 1835
BisI GCNGC 3 cut(s) 336, 339, 1803
BlsI GCNGC 3 cut(s) 337, 340, 1804
BmcAI AGTACT 2 cut(s) 1303, 1483
Bme1390I CCNGG 2 cut(s) 362, 1261
Bme18I GGWCC 2 cut(s) 520, 842
BmeRI GACNNNNNGTC 1 cut(s) 418
BmeT110I CYCGRG 1 cut(s) 1707
BmgT120I GGNCC 2 cut(s) 520, 842
BmiI GGNNCC 2 cut(s) 183, 679
BmrFI CCNGG 2 cut(s) 362, 1261
BmsI GCATC 4 cut(s) 391, 733, 827, 902
BpiI GAAGAC 1 cut(s) 481
Bpu10I CCTNAGC 1 cut(s) 1389
Bpu14I TTCGAA 1 cut(s) 593
Bsa29I ATCGAT 1 cut(s) 210
BsaAI YACGTR 1 cut(s) 670
BsaJI CCNNGG 5 cut(s) 342, 360, 1259, 1407, 1650
BsaXI ACNNNNNCTCC 6 cut(s) 82, 112, 1229, 1259, 1468, 1498
Bsc4I CCNNNNNNNGG 1 cut(s) 1504
Bse118I RCCGGY 1 cut(s) 1780
Bse1I ACTGG 3 cut(s) 183, 844, 1421
BseBI CCWGG 2 cut(s) 362, 1261
BseCI ATCGAT 1 cut(s) 210
BseDI CCNNGG 5 cut(s) 342, 360, 1259, 1407, 1650
BseGI GGATG 4 cut(s) 10, 1152, 1420, 1437
BseLI CCNNNNNNNGG 1 cut(s) 1504
BseMII CTCAG 5 cut(s) 239, 1077, 1298, 1380, 1535
BseNI ACTGG 3 cut(s) 183, 844, 1421
BseRI GAGGAG 1 cut(s) 1112
BseSI GKGCMC 1 cut(s) 827
BseXI GCAGC 3 cut(s) 322, 350, 1789
BsgI GTGCAG 1 cut(s) 1082
BshFI GGCC 1 cut(s) 1649
BshVI ATCGAT 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 1733
BsiHKCI CYCGRG 1 cut(s) 1707
BsiSI CCGG 1 cut(s) 1781
BslFI GGGAC 1 cut(s) 1574
BslI CCNNNNNNNGG 1 cut(s) 1504
BsmAI GTCTC 4 cut(s) 29, 178, 704, 1579
BsmBI CGTCTC 1 cut(s) 1579
BsmFI GGGAC 1 cut(s) 1574
BsmI GAATGC 1 cut(s) 820
BsnI GGCC 1 cut(s) 1649
BsoBI CYCGRG 1 cut(s) 1707
Bsp119I TTCGAA 1 cut(s) 593
Bsp1286I GDGCHC 2 cut(s) 827, 1733
Bsp1407I TGTACA 1 cut(s) 746
Bsp143I GATC 8 cut(s) 181, 272, 1113, 1426, 1461, 1494, 1593, 1702
BspACI CCGC 1 cut(s) 1762
BspANI GGCC 1 cut(s) 1649
BspCNI CTCAG 5 cut(s) 240, 1078, 1299, 1381, 1536
BspDI ATCGAT 1 cut(s) 210
BspLI GGNNCC 2 cut(s) 183, 679
BspMAI CTGCAG 2 cut(s) 340, 1839
BspPI GGATC 5 cut(s) 176, 189, 1469, 1489, 1697
BspT104I TTCGAA 1 cut(s) 593
BsrFI RCCGGY 1 cut(s) 1780
BsrGI TGTACA 1 cut(s) 746
BsrI ACTGG 3 cut(s) 183, 844, 1421
BssAI RCCGGY 1 cut(s) 1780
BssECI CCNNGG 5 cut(s) 342, 360, 1259, 1407, 1650
BssMI GATC 8 cut(s) 181, 272, 1113, 1426, 1461, 1494, 1593, 1702
BssSI CACGAG 1 cut(s) 157
BssT1I CCWWGG 2 cut(s) 1407, 1650
Bst2BI CACGAG 1 cut(s) 157
Bst2UI CCWGG 2 cut(s) 362, 1261
Bst4CI ACNGT 6 cut(s) 746, 1038, 1507, 1517, 1588, 1789
Bst6I CTCTTC 2 cut(s) 267, 1835
BstAUI TGTACA 1 cut(s) 746
BstBAI YACGTR 1 cut(s) 670
BstBI TTCGAA 1 cut(s) 593
BstC8I GCNNGC 2 cut(s) 1227, 1729
BstDEI CTNAG 6 cut(s) 248, 1086, 1307, 1389, 1491, 1544
BstF5I GGATG 4 cut(s) 10, 1152, 1420, 1437
BstHHI GCGC 1 cut(s) 429
BstKTI GATC 8 cut(s) 184, 275, 1116, 1429, 1464, 1497, 1596, 1705
BstMAI GTCTC 4 cut(s) 29, 178, 704, 1579
BstMBI GATC 8 cut(s) 181, 272, 1113, 1426, 1461, 1494, 1593, 1702
BstMWI GCNNNNNNNGC 2 cut(s) 332, 1646
BstNI CCWGG 2 cut(s) 362, 1261
BstNSI RCATGY 2 cut(s) 1229, 1567
BstSCI CCNGG 2 cut(s) 360, 1259
BstSFI CTRYAG 2 cut(s) 336, 1835
BstSLI GKGCMC 1 cut(s) 827
BstV1I GCAGC 3 cut(s) 322, 350, 1789
BstV2I GAAGAC 1 cut(s) 481
BstX2I RGATCY 3 cut(s) 181, 1461, 1494
BstYI RGATCY 3 cut(s) 181, 1461, 1494
Bsu15I ATCGAT 1 cut(s) 210
BsuRI GGCC 1 cut(s) 1649
BsuTUI ATCGAT 1 cut(s) 210
BtsCI GGATG 4 cut(s) 10, 1152, 1420, 1437
BtsI GCAGTG 1 cut(s) 422
BtsIMutI CAGTG 2 cut(s) 176, 422
Cac8I GCNNGC 2 cut(s) 1227, 1729
CfoI GCGC 1 cut(s) 429
Cfr10I RCCGGY 1 cut(s) 1780
Cfr13I GGNCC 2 cut(s) 520, 842
ClaI ATCGAT 1 cut(s) 210
CseI GACGC 1 cut(s) 1561
Csp6I GTAC 8 cut(s) 671, 747, 753, 772, 1045, 1302, 1316, 1482
CspCI CAANNNNNGTGG 2 cut(s) 897, 932
CviAII CATG 9 cut(s) 132, 280, 614, 717, 1189, 1226, 1234, 1297, 1564
CviQI GTAC 8 cut(s) 671, 747, 753, 772, 1045, 1302, 1316, 1482
DdeI CTNAG 6 cut(s) 248, 1086, 1307, 1389, 1491, 1544
DpnI GATC 8 cut(s) 183, 274, 1115, 1428, 1463, 1496, 1595, 1704
DpnII GATC 8 cut(s) 181, 272, 1113, 1426, 1461, 1494, 1593, 1702
DraIII CACNNNGTG 1 cut(s) 1677
DrdI GACNNNNNNGTC 1 cut(s) 1072
DriI GACNNNNNGTC 1 cut(s) 418
DseDI GACNNNNNNGTC 1 cut(s) 1072
EaeI YGGCCR 1 cut(s) 1647
Eam1104I CTCTTC 2 cut(s) 267, 1835
Eam1105I GACNNNNNGTC 1 cut(s) 418
EarI CTCTTC 2 cut(s) 267, 1835
Ecl136II GAGCTC 1 cut(s) 1731
Eco130I CCWWGG 2 cut(s) 1407, 1650
Eco24I GRGCYC 1 cut(s) 1733
Eco32I GATATC 1 cut(s) 286
Eco47I GGWCC 2 cut(s) 520, 842
Eco53kI GAGCTC 1 cut(s) 1731
Eco57I CTGAAG 1 cut(s) 1391
Eco88I CYCGRG 1 cut(s) 1707
EcoICRI GAGCTC 1 cut(s) 1731
EcoRII CCWGG 2 cut(s) 360, 1259
EcoRV GATATC 1 cut(s) 286
EcoT14I CCWWGG 2 cut(s) 1407, 1650
EcoT22I ATGCAT 1 cut(s) 820
EcoT38I GRGCYC 1 cut(s) 1733
ErhI CCWWGG 2 cut(s) 1407, 1650
Esp3I CGTCTC 1 cut(s) 1579
FaeI CATG 9 cut(s) 135, 283, 617, 720, 1192, 1229, 1237, 1300, 1567
FaqI GGGAC 1 cut(s) 1574
FatI CATG 9 cut(s) 131, 279, 613, 716, 1188, 1225, 1233, 1296, 1563
FblI GTMKAC 1 cut(s) 940
Fnu4HI GCNGC 3 cut(s) 336, 339, 1803
FokI GGATG 4 cut(s) 17, 1159, 1427, 1444
FriOI GRGCYC 1 cut(s) 1733
Fsp4HI GCNGC 3 cut(s) 336, 339, 1803
FspBI CTAG 3 cut(s) 111, 449, 1479
GlaI GCGC 1 cut(s) 428
GluI GCNGC 3 cut(s) 336, 339, 1803
HaeIII GGCC 1 cut(s) 1649
HapII CCGG 1 cut(s) 1781
HgaI GACGC 1 cut(s) 1561
HhaI GCGC 1 cut(s) 429
Hin1II CATG 9 cut(s) 135, 283, 617, 720, 1192, 1229, 1237, 1300, 1567
Hin6I GCGC 1 cut(s) 427
HinP1I GCGC 1 cut(s) 427
HincII GTYRAC 2 cut(s) 412, 1266
HindII GTYRAC 2 cut(s) 412, 1266
HinfI GANTC 8 cut(s) 140, 368, 610, 700, 869, 967, 1240, 1336
HpaII CCGG 1 cut(s) 1781
HphI GGTGA 4 cut(s) 44, 805, 1435, 1529
Hpy166II GTNNAC 4 cut(s) 108, 412, 941, 1266
Hpy188III TCNNGA 5 cut(s) 320, 510, 866, 1591, 1709
Hpy8I GTNNAC 4 cut(s) 108, 412, 941, 1266
Hpy99I CGWCG 2 cut(s) 1474, 1758
HpyAV CCTTC 5 cut(s) 1101, 1322, 1442, 1625, 1708
HpyCH4III ACNGT 6 cut(s) 746, 1038, 1507, 1517, 1588, 1789
HpyCH4IV ACGT 3 cut(s) 255, 669, 1745
HpyF10VI GCNNNNNNNGC 2 cut(s) 332, 1646
HpyF3I CTNAG 6 cut(s) 248, 1086, 1307, 1389, 1491, 1544
HpySE526I ACGT 3 cut(s) 255, 669, 1745
Hsp92II CATG 9 cut(s) 135, 283, 617, 720, 1192, 1229, 1237, 1300, 1567
HspAI GCGC 1 cut(s) 427
Kzo9I GATC 8 cut(s) 181, 272, 1113, 1426, 1461, 1494, 1593, 1702
LmnI GCTCC 2 cut(s) 677, 1799
Lsp1109I GCAGC 3 cut(s) 322, 350, 1789
LweI GCATC 4 cut(s) 391, 733, 827, 902
MaeI CTAG 3 cut(s) 111, 449, 1479
MaeII ACGT 3 cut(s) 255, 669, 1745
MalI GATC 8 cut(s) 183, 274, 1115, 1428, 1463, 1496, 1595, 1704
MboI GATC 8 cut(s) 181, 272, 1113, 1426, 1461, 1494, 1593, 1702
MflI RGATCY 3 cut(s) 181, 1461, 1494
MhlI GDGCHC 2 cut(s) 827, 1733
MlyI GAGTC 1 cut(s) 619
MmeI TCCRAC 2 cut(s) 38, 1536
Mph1103I ATGCAT 1 cut(s) 820
MroXI GAANNNNTTC 3 cut(s) 1001, 1244, 1539
MseI TTAA 1 cut(s) 627
MslI CAYNNNNRTG 1 cut(s) 1398
MspI CCGG 1 cut(s) 1781
MspR9I CCNGG 2 cut(s) 362, 1261
Mva1269I GAATGC 1 cut(s) 820
MvaI CCWGG 2 cut(s) 362, 1261
MwoI GCNNNNNNNGC 2 cut(s) 332, 1646
NdeII GATC 8 cut(s) 181, 272, 1113, 1426, 1461, 1494, 1593, 1702
NlaIII CATG 9 cut(s) 135, 283, 617, 720, 1192, 1229, 1237, 1300, 1567
NlaIV GGNNCC 2 cut(s) 183, 679
NmuCI GTSAC 8 cut(s) 32, 420, 665, 737, 793, 1361, 1441, 1517
NsiI ATGCAT 1 cut(s) 820
NspI RCATGY 2 cut(s) 1229, 1567
NspV TTCGAA 1 cut(s) 593
PaeI GCATGC 1 cut(s) 1229
PaeR7I CTCGAG 1 cut(s) 1707
PctI GAATGC 1 cut(s) 820
PdmI GAANNNNTTC 3 cut(s) 1001, 1244, 1539
PfeI GAWTC 7 cut(s) 140, 368, 700, 869, 967, 1240, 1336
PkrI GCNGC 3 cut(s) 337, 340, 1804
PleI GAGTC 1 cut(s) 618
PpsI GAGTC 1 cut(s) 618
Ppu21I YACGTR 1 cut(s) 670
PsiI TTATAA 1 cut(s) 803
Psp124BI GAGCTC 1 cut(s) 1733
Psp6I CCWGG 2 cut(s) 360, 1259
PspGI CCWGG 2 cut(s) 360, 1259
PspN4I GGNNCC 2 cut(s) 183, 679
PspPI GGNCC 2 cut(s) 520, 842
PstI CTGCAG 2 cut(s) 340, 1839
PsuI RGATCY 3 cut(s) 181, 1461, 1494
RsaI GTAC 8 cut(s) 672, 748, 754, 773, 1046, 1303, 1317, 1483
RsaNI GTAC 8 cut(s) 671, 747, 753, 772, 1045, 1302, 1316, 1482
RseI CAYNNNNRTG 1 cut(s) 1398
SacI GAGCTC 1 cut(s) 1733
SaqAI TTAA 1 cut(s) 627
SatI GCNGC 3 cut(s) 336, 339, 1803
Sau3AI GATC 8 cut(s) 181, 272, 1113, 1426, 1461, 1494, 1593, 1702
Sau96I GGNCC 2 cut(s) 520, 842
ScaI AGTACT 2 cut(s) 1303, 1483
SchI GAGTC 1 cut(s) 619
ScrFI CCNGG 2 cut(s) 362, 1261
SduI GDGCHC 2 cut(s) 827, 1733
SfaNI GCATC 4 cut(s) 391, 733, 827, 902
SfcI CTRYAG 2 cut(s) 336, 1835
Sfr274I CTCGAG 1 cut(s) 1707
SfuI TTCGAA 1 cut(s) 593
SinI GGWCC 2 cut(s) 520, 842
SlaI CTCGAG 1 cut(s) 1707
SmiMI CAYNNNNRTG 1 cut(s) 1398
SmlI CTYRAG 1 cut(s) 1707
SmoI CTYRAG 1 cut(s) 1707
SpeI ACTAGT 1 cut(s) 1478
SphI GCATGC 1 cut(s) 1229
SsiI CCGC 1 cut(s) 1762
SspI AATATT 2 cut(s) 560, 861
SspMI CTAG 3 cut(s) 111, 449, 1479
SstI GAGCTC 1 cut(s) 1733
StyD4I CCNGG 2 cut(s) 360, 1259
StyI CCWWGG 2 cut(s) 1407, 1650
TaaI ACNGT 6 cut(s) 746, 1038, 1507, 1517, 1588, 1789
TaiI ACGT 3 cut(s) 258, 672, 1748
TatI WGTACW 4 cut(s) 746, 771, 1301, 1481
TfiI GAWTC 7 cut(s) 140, 368, 700, 869, 967, 1240, 1336
Tru1I TTAA 1 cut(s) 627
Tru9I TTAA 1 cut(s) 627
TscAI CASTG 2 cut(s) 183, 429
TseFI GTSAC 8 cut(s) 32, 420, 665, 737, 793, 1361, 1441, 1517
TseI GCWGC 3 cut(s) 335, 338, 1802
Tsp45I GTSAC 8 cut(s) 32, 420, 665, 737, 793, 1361, 1441, 1517
TspDTI ATGAA 7 cut(s) 21, 89, 120, 1151, 1349, 1431, 1548
TspGWI ACGGA 1 cut(s) 1742
TspRI CASTG 2 cut(s) 183, 429
VpaK11BI GGWCC 2 cut(s) 520, 842
XapI RAATTY 5 cut(s) 315, 374, 570, 946, 997
XceI RCATGY 2 cut(s) 1229, 1567
XhoI CTCGAG 1 cut(s) 1707
XmiI GTMKAC 1 cut(s) 940
XmnI GAANNNNTTC 3 cut(s) 1001, 1244, 1539
XspI CTAG 3 cut(s) 111, 449, 1479
ZrmI AGTACT 2 cut(s) 1303, 1483
Zsp2I ATGCAT 1 cut(s) 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.