Rorug01G0427400

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000119
Physical Location & Seq
Reverse (-)
52711309 .. 52713097
1789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0427400.1

Sequence Viewer

Length: 369 bp
ATGGCTTACGCAGCGATGAAACCCACCAAGCCTGGTCTCGAGGAGACACAGGAGCAGATCCACAAGATCAGAATCACCCTCTCTTCCAAGAACGTCAAGAACCTCGAGAAAGTTTGTGCTGATTTGGTTCGCGGTGCCAAGGACAAGAGGCTTAGGGTGAAGGGACCAGTGAGGATGCCTACCAAGGTTCTGCACATTACCACCAGGAAGTCTCCCTGTGGAGAAGGTACTAACACATGGGACAGATTTGAGTTGCGTGTGCACAAGCGTGTTATTGATCTCTTCAGCTCTCCTGATGTTGTGAAGCAGATCACCTCCATCACGATTGAACCTGGTGTTGAAGTGGAGGTCACAATTGCCGACCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

122

Amino Acids

13.75

Weight (kDa)

9.65

Isoelectric Point (pI)

42.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S10 PF00338 24 - 118 1.1e-28 Ribosomal protein S10p/S20e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 134
AccII CGCG 1 cut(s) 132
AciI CCGC 1 cut(s) 132
AclWI GGATC 1 cut(s) 52
AcuI CTGAAG 1 cut(s) 268
AfaI GTAC 1 cut(s) 229
AgsI TTSAA 2 cut(s) 329, 341
AjnI CCWGG 3 cut(s) 31, 203, 331
AleI CACNNNNGTG 1 cut(s) 267
AluBI AGCT 1 cut(s) 288
AluI AGCT 1 cut(s) 288
Alw21I GWGCWC 1 cut(s) 264
Alw26I GTCTC 3 cut(s) 38, 41, 216
Alw44I GTGCAC 1 cut(s) 260
AlwI GGATC 1 cut(s) 52
Ama87I CYCGRG 2 cut(s) 38, 104
ApaLI GTGCAC 1 cut(s) 260
ApeKI GCWGC 1 cut(s) 11
AspS9I GGNCC 1 cut(s) 164
AsuHPI GGTGA 3 cut(s) 67, 169, 304
AvaI CYCGRG 2 cut(s) 38, 104
AvaII GGWCC 1 cut(s) 164
BaeGI GKGCMC 1 cut(s) 264
BanI GGYRCC 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 1 cut(s) 23
BccI CCATC 1 cut(s) 326
BciT130I CCWGG 3 cut(s) 33, 205, 333
BcoDI GTCTC 3 cut(s) 38, 41, 216
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 3 cut(s) 33, 205, 333
Bme18I GGWCC 1 cut(s) 164
BmeT110I CYCGRG 2 cut(s) 38, 104
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 2 cut(s) 136, 165
BmrFI CCNGG 3 cut(s) 33, 205, 333
BmsI GCATC 1 cut(s) 165
Bpu10I CCTNAGC 1 cut(s) 152
BsaBI GATNNNNATC 1 cut(s) 71
BsaI GGTCTC 1 cut(s) 41
BsaJI CCNNGG 2 cut(s) 138, 183
Bse1I ACTGG 1 cut(s) 167
Bse8I GATNNNNATC 1 cut(s) 71
BseBI CCWGG 3 cut(s) 33, 205, 333
BseDI CCNNGG 2 cut(s) 138, 183
BseGI GGATG 1 cut(s) 180
BseJI GATNNNNATC 1 cut(s) 71
BseNI ACTGG 1 cut(s) 167
BseRI GAGGAG 1 cut(s) 56
BseSI GKGCMC 1 cut(s) 264
BseXI GCAGC 1 cut(s) 23
BsgI GTGCAG 1 cut(s) 176
Bsh1236I CGCG 1 cut(s) 132
BshNI GGYRCC 1 cut(s) 134
BsiHKAI GWGCWC 1 cut(s) 264
BsiHKCI CYCGRG 2 cut(s) 38, 104
BslFI GGGAC 2 cut(s) 177, 254
BsmAI GTCTC 3 cut(s) 38, 41, 216
BsmFI GGGAC 2 cut(s) 177, 254
Bso31I GGTCTC 1 cut(s) 41
BsoBI CYCGRG 2 cut(s) 38, 104
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 4 cut(s) 57, 66, 277, 309
BspACI CCGC 1 cut(s) 132
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 2 cut(s) 136, 165
BspPI GGATC 1 cut(s) 52
BspT107I GGYRCC 1 cut(s) 134
BspTNI GGTCTC 1 cut(s) 41
BsrI ACTGG 1 cut(s) 167
BssECI CCNNGG 2 cut(s) 138, 183
BssMI GATC 4 cut(s) 57, 66, 277, 309
BssT1I CCWWGG 2 cut(s) 138, 183
Bst2UI CCWGG 3 cut(s) 33, 205, 333
Bst6I CTCTTC 2 cut(s) 88, 287
BstDEI CTNAG 1 cut(s) 152
BstF5I GGATG 1 cut(s) 180
BstFNI CGCG 1 cut(s) 132
BstKTI GATC 4 cut(s) 60, 69, 280, 312
BstMAI GTCTC 3 cut(s) 38, 41, 216
BstMBI GATC 4 cut(s) 57, 66, 277, 309
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 3 cut(s) 33, 205, 333
BstSCI CCNGG 3 cut(s) 31, 203, 331
BstSLI GKGCMC 1 cut(s) 264
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 57
BstYI RGATCY 1 cut(s) 57
BtgZI GCGATG 1 cut(s) 29
BtsCI GGATG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 164
CsiI ACCWGGT 1 cut(s) 331
Csp6I GTAC 1 cut(s) 228
CviAII CATG 1 cut(s) 237
CviJI RGCY 4 cut(s) 5, 31, 151, 288
CviKI_1 RGCY 4 cut(s) 5, 31, 151, 288
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 1 cut(s) 152
DpnI GATC 4 cut(s) 59, 68, 279, 311
DpnII GATC 4 cut(s) 57, 66, 277, 309
Eam1104I CTCTTC 2 cut(s) 88, 287
EarI CTCTTC 2 cut(s) 88, 287
Eco130I CCWWGG 2 cut(s) 138, 183
Eco31I GGTCTC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 268
Eco88I CYCGRG 2 cut(s) 38, 104
EcoRII CCWGG 3 cut(s) 31, 203, 331
EcoT14I CCWWGG 2 cut(s) 138, 183
ErhI CCWWGG 2 cut(s) 138, 183
FaeI CATG 1 cut(s) 240
FaiI YATR 1 cut(s) 238
FaqI GGGAC 2 cut(s) 177, 254
FatI CATG 1 cut(s) 236
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 1 cut(s) 187
Fsp4HI GCNGC 1 cut(s) 12
GluI GCNGC 1 cut(s) 12
Hin1II CATG 1 cut(s) 240
HinfI GANTC 1 cut(s) 72
HphI GGTGA 3 cut(s) 67, 169, 304
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 1 cut(s) 71
Hpy188III TCNNGA 5 cut(s) 38, 97, 106, 293, 322
Hpy8I GTNNAC 1 cut(s) 262
HpyAV CCTTC 2 cut(s) 154, 218
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 2 cut(s) 193, 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 152
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 1 cut(s) 240
Kzo9I GATC 4 cut(s) 57, 66, 277, 309
LmnI GCTCC 1 cut(s) 52
Lsp1109I GCAGC 1 cut(s) 23
LweI GCATC 1 cut(s) 165
MabI ACCWGGT 1 cut(s) 331
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 349
MalI GATC 4 cut(s) 59, 68, 279, 311
MboI GATC 4 cut(s) 57, 66, 277, 309
MboII GAAGA 2 cut(s) 75, 274
MfeI CAATTG 1 cut(s) 354
MflI RGATCY 1 cut(s) 57
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 1 cut(s) 354
MnlI CCTC 7 cut(s) 34, 89, 113, 141, 165, 325, 340
MslI CAYNNNNRTG 1 cut(s) 267
MspR9I CCNGG 3 cut(s) 33, 205, 333
MunI CAATTG 1 cut(s) 354
MvaI CCWGG 3 cut(s) 33, 205, 333
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 4 cut(s) 57, 66, 277, 309
NlaIII CATG 1 cut(s) 240
NlaIV GGNNCC 2 cut(s) 136, 165
NmuCI GTSAC 1 cut(s) 349
OliI CACNNNNGTG 1 cut(s) 267
PaeR7I CTCGAG 2 cut(s) 38, 104
PfeI GAWTC 1 cut(s) 72
PkrI GCNGC 1 cut(s) 13
Psp6I CCWGG 3 cut(s) 31, 203, 331
PspGI CCWGG 3 cut(s) 31, 203, 331
PspN4I GGNNCC 2 cut(s) 136, 165
PspPI GGNCC 1 cut(s) 164
PsuI RGATCY 1 cut(s) 57
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
RseI CAYNNNNRTG 1 cut(s) 267
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 4 cut(s) 57, 66, 277, 309
Sau96I GGNCC 1 cut(s) 164
ScrFI CCNGG 3 cut(s) 33, 205, 333
SduI GDGCHC 1 cut(s) 264
SetI ASST 8 cut(s) 96, 105, 189, 229, 290, 317, 334, 351
SexAI ACCWGGT 1 cut(s) 331
SfaNI GCATC 1 cut(s) 165
Sfr274I CTCGAG 2 cut(s) 38, 104
SinI GGWCC 1 cut(s) 164
SlaI CTCGAG 2 cut(s) 38, 104
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 2 cut(s) 38, 104
SmoI CTYRAG 2 cut(s) 38, 104
Sse9I AATT 1 cut(s) 354
SsiI CCGC 1 cut(s) 132
StyD4I CCNGG 3 cut(s) 31, 203, 331
StyI CCWWGG 2 cut(s) 138, 183
TaiI ACGT 1 cut(s) 96
TaqI TCGA 2 cut(s) 39, 105
TasI AATT 1 cut(s) 354
TfiI GAWTC 1 cut(s) 72
TscAI CASTG 1 cut(s) 174
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 1 cut(s) 32
TspRI CASTG 1 cut(s) 174
VneI GTGCAC 1 cut(s) 260
VpaK11BI GGWCC 1 cut(s) 164
XhoI CTCGAG 2 cut(s) 38, 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.