Rorug01G0427600

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
52718788 .. 52720888
2101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0427600.1

Sequence Viewer

Length: 456 bp
ATGGGGCGTATGCACAGCCATGGAAAGGGTATGTCAGCTTCGGCTCTGCCCTACAAGAGAACCCCACCGAGCTGGTTGAAGATCTCTACCCCCGATGTGGAGGATAGCATTTGCAAGTTTGCGAAGAAGGGTATGACGCCGTCTCAGATCGGTGTGATTCTTCGTGACTCTCATGGGATTGCTCAGGTTAAGAGCGTTACTGGAAGCAAGATCTTGCGGATTCTTAAAGCTCATGGTCTTGCTCCTGAAATTCCTGAGGATCTGTACCACCTTATCAAGAAGGCTGTGTCAGTCAGGAAGCATTTGGAGAGGAACAGGAAGGACAAGGATTCCAAGTTTCGTTTGATTCTTGTGGAGAGCAGGATTCACAGGCTTGCTCGTTACTACAAGAAGACAAAGAAGCTCCCCCCAGTCTGGAAATACGAGTCCACCACTGCCAGCACTCTTGTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

151

Amino Acids

17.08

Weight (kDa)

10.31

Isoelectric Point (pI)

43.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S13_N PF08069 1 - 60 8.7e-31 Ribosomal S13/S15 N-terminal domain
Ribosomal_S15 PF00312 74 - 146 2.1e-15 Ribosomal protein S15
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 217
AclWI GGATC 1 cut(s) 267
AcsI RAATTY 1 cut(s) 249
AcyI GRCGYC 1 cut(s) 137
AfaI GTAC 1 cut(s) 266
AfiI CCNNNNNNNGG 3 cut(s) 25, 97, 414
AgsI TTSAA 1 cut(s) 79
AluBI AGCT 4 cut(s) 38, 72, 230, 403
AluI AGCT 4 cut(s) 38, 72, 230, 403
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 1 cut(s) 267
ApoI RAATTY 1 cut(s) 249
AxyI CCTNAGG 1 cut(s) 255
BarI GAAGNNNNNNTAC 2 cut(s) 22, 54
BbsI GAAGAC 1 cut(s) 398
BceAI ACGGC 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 147
BglII AGATCT 2 cut(s) 81, 210
BmrI ACTGGG 1 cut(s) 404
BmuI ACTGGG 1 cut(s) 404
BpiI GAAGAC 1 cut(s) 398
Bpu10I CCTNAGC 1 cut(s) 183
BsaHI GRCGYC 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 19
Bsc4I CCNNNNNNNGG 3 cut(s) 25, 97, 414
Bse1I ACTGG 2 cut(s) 205, 410
Bse21I CCTNAGG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 19
BseLI CCNNNNNNNGG 3 cut(s) 25, 97, 414
BseMII CTCAG 3 cut(s) 158, 197, 246
BseNI ACTGG 2 cut(s) 205, 410
BslI CCNNNNNNNGG 3 cut(s) 25, 97, 414
BsmAI GTCTC 1 cut(s) 147
BsmBI CGTCTC 1 cut(s) 147
Bsp143I GATC 4 cut(s) 81, 147, 210, 259
Bsp19I CCATGG 1 cut(s) 19
BspACI CCGC 1 cut(s) 217
BspCNI CTCAG 3 cut(s) 157, 196, 247
BspPI GGATC 1 cut(s) 267
BsrI ACTGG 2 cut(s) 205, 410
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 4 cut(s) 81, 147, 210, 259
BssNI GRCGYC 1 cut(s) 137
BssT1I CCWWGG 1 cut(s) 19
BstACI GRCGYC 1 cut(s) 137
BstC8I GCNNGC 2 cut(s) 375, 439
BstDEI CTNAG 4 cut(s) 144, 183, 255, 453
BstDSI CCRYGG 1 cut(s) 19
BstKTI GATC 4 cut(s) 84, 150, 213, 262
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 4 cut(s) 81, 147, 210, 259
BstV2I GAAGAC 1 cut(s) 398
BstX2I RGATCY 3 cut(s) 81, 210, 259
BstXI CCANNNNNNTGG 1 cut(s) 72
BstYI RGATCY 3 cut(s) 81, 210, 259
Bsu36I CCTNAGG 1 cut(s) 255
BtgI CCRYGG 1 cut(s) 19
BtsI GCAGTG 1 cut(s) 432
BtsIMutI CAGTG 1 cut(s) 432
Cac8I GCNNGC 2 cut(s) 375, 439
CseI GACGC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 265
CviAII CATG 3 cut(s) 20, 173, 233
CviJI RGCY 8 cut(s) 18, 38, 44, 72, 230, 284, 373, 403
CviKI_1 RGCY 8 cut(s) 18, 38, 44, 72, 230, 284, 373, 403
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 4 cut(s) 144, 183, 255, 453
DpnI GATC 4 cut(s) 83, 149, 212, 261
DpnII GATC 4 cut(s) 81, 147, 210, 259
Eco130I CCWWGG 1 cut(s) 19
Eco81I CCTNAGG 1 cut(s) 255
EcoT14I CCWWGG 1 cut(s) 19
ErhI CCWWGG 1 cut(s) 19
Esp3I CGTCTC 1 cut(s) 147
FaeI CATG 3 cut(s) 23, 176, 236
FaiI YATR 6 cut(s) 11, 21, 32, 134, 174, 234
FatI CATG 3 cut(s) 19, 172, 232
HgaI GACGC 1 cut(s) 145
Hin1I GRCGYC 1 cut(s) 137
Hin1II CATG 3 cut(s) 23, 176, 236
HinfI GANTC 7 cut(s) 157, 167, 220, 329, 346, 364, 425
Hpy166II GTNNAC 1 cut(s) 429
Hpy188I TCNGA 1 cut(s) 147
Hpy188III TCNNGA 6 cut(s) 164, 245, 254, 277, 295, 415
Hpy8I GTNNAC 1 cut(s) 429
HpyAV CCTTC 3 cut(s) 121, 274, 313
HpyCH4V TGCA 2 cut(s) 13, 114
HpyF3I CTNAG 4 cut(s) 144, 183, 255, 453
Hsp92I GRCGYC 1 cut(s) 137
Hsp92II CATG 3 cut(s) 23, 176, 236
Kzo9I GATC 4 cut(s) 81, 147, 210, 259
LmnI GCTCC 2 cut(s) 247, 408
MaeIII GTNAC 3 cut(s) 164, 196, 380
MalI GATC 4 cut(s) 83, 149, 212, 261
MboI GATC 4 cut(s) 81, 147, 210, 259
MboII GAAGA 4 cut(s) 91, 136, 152, 403
MflI RGATCY 3 cut(s) 81, 210, 259
MluCI AATT 1 cut(s) 249
MlyI GAGTC 2 cut(s) 161, 434
MnlI CCTC 3 cut(s) 94, 250, 303
MseI TTAA 2 cut(s) 189, 225
MslI CAYNNNNRTG 1 cut(s) 18
NcoI CCATGG 1 cut(s) 19
NdeII GATC 4 cut(s) 81, 147, 210, 259
NlaIII CATG 3 cut(s) 23, 176, 236
NmuCI GTSAC 1 cut(s) 164
PfeI GAWTC 5 cut(s) 157, 220, 329, 346, 364
PflFI GACNNNGTC 1 cut(s) 139
PleI GAGTC 2 cut(s) 161, 433
PpsI GAGTC 2 cut(s) 161, 433
PsuI RGATCY 3 cut(s) 81, 210, 259
PsyI GACNNNGTC 1 cut(s) 139
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
RseI CAYNNNNRTG 1 cut(s) 18
SaqAI TTAA 2 cut(s) 189, 225
Sau3AI GATC 4 cut(s) 81, 147, 210, 259
SchI GAGTC 2 cut(s) 161, 434
SetI ASST 6 cut(s) 40, 74, 189, 232, 273, 405
SmiMI CAYNNNNRTG 1 cut(s) 18
Sse9I AATT 1 cut(s) 249
SsiI CCGC 1 cut(s) 217
StyI CCWWGG 1 cut(s) 19
TasI AATT 1 cut(s) 249
TfiI GAWTC 5 cut(s) 157, 220, 329, 346, 364
Tru1I TTAA 2 cut(s) 189, 225
Tru9I TTAA 2 cut(s) 189, 225
TscAI CASTG 1 cut(s) 439
TseFI GTSAC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 164
TspRI CASTG 1 cut(s) 439
Tth111I GACNNNGTC 1 cut(s) 139
XapI RAATTY 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.