Rmu_sc0004494.1_g000009

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004494.1
OG0000119
Physical Location & Seq
Reverse (-)
51431 .. 52286
856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004494.1_g000009.1.cds

Sequence Viewer

Length: 774 bp
atgggaactgcaaagtcagaggagataagaaggaagatcaaatcaaaaaagcaagatatgaaagagtggatggagaaaaattgcctccctgctaagttgaggaaagaaatcatggcaaatataagagaaaaattagaacaagacaagcatgctgacatggagaatctgttctccattcttccctggtcaaccaaaaaatctctaaagcgtgttctctgcatgagtactctgagaaaagtaccaatgcttgaaggtatgaatccaaaagttttgaaaatgatatgtgactatctgaagcctgtgatataccctgagcatagctatgttgccaaggtggatgaaccagttgatcggatggtgcttgtcaccgaaggaactatgtggatctactcgtcgaatactagtactccatctaagatccacaggacggttgagaacggtgacatttatggagatgaacaacttctgagttgggcgtcgaaggacatgcaacacgtctcgtttgcaaccctcccgatctcaaaagaaaatgtgaaatgtcatacaagagtggaagggtttgctatcacggccaaggacttgaaagcagtcgccaccaagtgcaaaatgtattggaattacgatgatcctcgagagaaggagagggtggcgagctctaccataggaacgtcattccgtcgaaaccgcaataacccaaataggccggctaccgtaggagtaggagctgcgacctcgccaagaacacgaattgagtatctgcagaagagaacctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

257

Amino Acids

29.63

Weight (kDa)

9.62

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 685
AclWI GGATC 3 cut(s) 392, 412, 620
AcoI YGGCCR 1 cut(s) 570
AcuI CTGAAG 1 cut(s) 314
AcyI GRCGYC 1 cut(s) 476
AdeI CACNNNGTG 1 cut(s) 600
AfaI GTAC 3 cut(s) 226, 240, 406
AfiI CCNNNNNNNGG 1 cut(s) 427
AflIII ACRYGT 1 cut(s) 493
AgsI TTSAA 3 cut(s) 251, 274, 583
AhlI ACTAGT 1 cut(s) 401
AjiI CACGTC 1 cut(s) 496
AjnI CCWGG 1 cut(s) 182
AloI GAACNNNNNNTCC 2 cut(s) 152, 184
AluBI AGCT 3 cut(s) 321, 654, 725
AluI AGCT 3 cut(s) 321, 654, 725
Alw21I GWGCWC 1 cut(s) 656
Alw26I GTCTC 1 cut(s) 502
AlwI GGATC 3 cut(s) 392, 412, 620
Ama87I CYCGRG 1 cut(s) 630
AoxI GGCC 2 cut(s) 570, 701
ApeKI GCWGC 1 cut(s) 725
Asp700I GAANNNNTTC 2 cut(s) 167, 462
AsuHPI GGTGA 2 cut(s) 358, 452
AvaI CYCGRG 1 cut(s) 630
BanII GRGCYC 1 cut(s) 656
Bbv12I GWGCWC 1 cut(s) 656
BbvI GCAGC 1 cut(s) 712
BccI CCATC 3 cut(s) 64, 349, 418
BceAI ACGGC 1 cut(s) 585
BcgI CGANNNNNNTGC 2 cut(s) 469, 503
BciT130I CCWGG 1 cut(s) 184
BcoDI GTCTC 1 cut(s) 502
BcuI ACTAGT 1 cut(s) 401
BfaI CTAG 1 cut(s) 402
BfmI CTRYAG 1 cut(s) 758
BisI GCNGC 1 cut(s) 726
BlsI GCNGC 1 cut(s) 727
BmcAI AGTACT 2 cut(s) 226, 406
Bme1390I CCNGG 1 cut(s) 184
BmeT110I CYCGRG 1 cut(s) 630
BmgBI CACGTC 1 cut(s) 496
BmrFI CCNGG 1 cut(s) 184
Bpu10I CCTNAGC 1 cut(s) 312
BsaHI GRCGYC 1 cut(s) 476
BsaJI CCNNGG 3 cut(s) 182, 330, 573
BsaXI ACNNNNNCTCC 4 cut(s) 152, 182, 391, 421
Bsc4I CCNNNNNNNGG 1 cut(s) 427
Bse118I RCCGGY 1 cut(s) 703
Bse1I ACTGG 1 cut(s) 344
BseBI CCWGG 1 cut(s) 184
BseDI CCNNGG 3 cut(s) 182, 330, 573
BseGI GGATG 3 cut(s) 75, 343, 360
BseLI CCNNNNNNNGG 1 cut(s) 427
BseMII CTCAG 3 cut(s) 221, 303, 458
BseNI ACTGG 1 cut(s) 344
BseRI GAGGAG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 712
BshFI GGCC 2 cut(s) 572, 703
BsiHKAI GWGCWC 1 cut(s) 656
BsiHKCI CYCGRG 1 cut(s) 630
BsiSI CCGG 1 cut(s) 704
BslI CCNNNNNNNGG 1 cut(s) 427
BsmAI GTCTC 1 cut(s) 502
BsmBI CGTCTC 1 cut(s) 502
BsnI GGCC 2 cut(s) 572, 703
BsoBI CYCGRG 1 cut(s) 630
Bsp1286I GDGCHC 1 cut(s) 656
Bsp143I GATC 6 cut(s) 36, 349, 384, 417, 516, 625
BspACI CCGC 1 cut(s) 685
BspANI GGCC 2 cut(s) 572, 703
BspCNI CTCAG 3 cut(s) 222, 304, 459
BspMAI CTGCAG 1 cut(s) 762
BspPI GGATC 3 cut(s) 392, 412, 620
BsrFI RCCGGY 1 cut(s) 703
BsrI ACTGG 1 cut(s) 344
BssAI RCCGGY 1 cut(s) 703
BssECI CCNNGG 3 cut(s) 182, 330, 573
BssMI GATC 6 cut(s) 36, 349, 384, 417, 516, 625
BssNI GRCGYC 1 cut(s) 476
BssT1I CCWWGG 2 cut(s) 330, 573
Bst2UI CCWGG 1 cut(s) 184
Bst4CI ACNGT 3 cut(s) 430, 440, 712
Bst6I CTCTTC 1 cut(s) 758
BstACI GRCGYC 1 cut(s) 476
BstC8I GCNNGC 3 cut(s) 150, 652, 705
BstDEI CTNAG 5 cut(s) 93, 230, 312, 414, 467
BstF5I GGATG 3 cut(s) 75, 343, 360
BstKTI GATC 6 cut(s) 39, 352, 387, 420, 519, 628
BstMAI GTCTC 1 cut(s) 502
BstMBI GATC 6 cut(s) 36, 349, 384, 417, 516, 625
BstMWI GCNNNNNNNGC 1 cut(s) 569
BstNI CCWGG 1 cut(s) 184
BstNSI RCATGY 2 cut(s) 152, 490
BstSCI CCNGG 1 cut(s) 182
BstSFI CTRYAG 1 cut(s) 758
BstV1I GCAGC 1 cut(s) 712
BstX2I RGATCY 2 cut(s) 384, 417
BstYI RGATCY 2 cut(s) 384, 417
BsuRI GGCC 2 cut(s) 572, 703
BtrI CACGTC 1 cut(s) 496
BtsCI GGATG 3 cut(s) 75, 343, 360
Cac8I GCNNGC 3 cut(s) 150, 652, 705
Cfr10I RCCGGY 1 cut(s) 703
CseI GACGC 1 cut(s) 465
Csp6I GTAC 3 cut(s) 225, 239, 405
CviAII CATG 5 cut(s) 112, 149, 157, 220, 487
CviJI RGCY 7 cut(s) 298, 321, 572, 654, 703, 707, 725
CviKI_1 RGCY 7 cut(s) 298, 321, 572, 654, 703, 707, 725
CviQI GTAC 3 cut(s) 225, 239, 405
DdeI CTNAG 5 cut(s) 93, 230, 312, 414, 467
DpnI GATC 6 cut(s) 38, 351, 386, 419, 518, 627
DpnII GATC 6 cut(s) 36, 349, 384, 417, 516, 625
DraIII CACNNNGTG 1 cut(s) 600
EaeI YGGCCR 1 cut(s) 570
Eam1104I CTCTTC 1 cut(s) 758
EarI CTCTTC 1 cut(s) 758
Ecl136II GAGCTC 1 cut(s) 654
Eco130I CCWWGG 2 cut(s) 330, 573
Eco24I GRGCYC 1 cut(s) 656
Eco53kI GAGCTC 1 cut(s) 654
Eco57I CTGAAG 1 cut(s) 314
Eco88I CYCGRG 1 cut(s) 630
EcoICRI GAGCTC 1 cut(s) 654
EcoRII CCWGG 1 cut(s) 182
EcoT14I CCWWGG 2 cut(s) 330, 573
EcoT38I GRGCYC 1 cut(s) 656
ErhI CCWWGG 2 cut(s) 330, 573
Esp3I CGTCTC 1 cut(s) 502
FaeI CATG 5 cut(s) 115, 152, 160, 223, 490
FatI CATG 5 cut(s) 111, 148, 156, 219, 486
Fnu4HI GCNGC 1 cut(s) 726
FokI GGATG 3 cut(s) 82, 350, 367
FriOI GRGCYC 1 cut(s) 656
Fsp4HI GCNGC 1 cut(s) 726
FspBI CTAG 1 cut(s) 402
GluI GCNGC 1 cut(s) 726
HaeIII GGCC 2 cut(s) 572, 703
HapII CCGG 1 cut(s) 704
HgaI GACGC 1 cut(s) 465
Hin1I GRCGYC 1 cut(s) 476
Hin1II CATG 5 cut(s) 115, 152, 160, 223, 490
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HinfI GANTC 2 cut(s) 163, 259
HpaII CCGG 1 cut(s) 704
HphI GGTGA 2 cut(s) 358, 452
Hpy166II GTNNAC 1 cut(s) 189
Hpy188I TCNGA 5 cut(s) 19, 231, 294, 354, 468
Hpy188III TCNNGA 2 cut(s) 514, 632
Hpy8I GTNNAC 1 cut(s) 189
Hpy99I CGWCG 3 cut(s) 397, 481, 681
HpyAV CCTTC 6 cut(s) 24, 245, 365, 475, 548, 631
HpyCH4III ACNGT 3 cut(s) 430, 440, 712
HpyCH4IV ACGT 2 cut(s) 495, 668
HpyCH4V TGCA 6 cut(s) 11, 219, 490, 506, 603, 760
HpyF10VI GCNNNNNNNGC 1 cut(s) 569
HpyF3I CTNAG 5 cut(s) 93, 230, 312, 414, 467
HpySE526I ACGT 2 cut(s) 495, 668
Hsp92I GRCGYC 1 cut(s) 476
Hsp92II CATG 5 cut(s) 115, 152, 160, 223, 490
KroI GCCGGC 1 cut(s) 703
KroNI GCCGGC 1 cut(s) 705
Kzo9I GATC 6 cut(s) 36, 349, 384, 417, 516, 625
LmnI GCTCC 1 cut(s) 722
LpnPI CCDG 8 cut(s) 102, 169, 196, 312, 324, 357, 409, 717
Lsp1109I GCAGC 1 cut(s) 712
MaeI CTAG 1 cut(s) 402
MaeII ACGT 2 cut(s) 495, 668
MaeIII GTNAC 3 cut(s) 284, 364, 440
MalI GATC 6 cut(s) 38, 351, 386, 419, 518, 627
MboI GATC 6 cut(s) 36, 349, 384, 417, 516, 625
MboII GAAGA 2 cut(s) 46, 170
MflI RGATCY 2 cut(s) 384, 417
MhlI GDGCHC 1 cut(s) 656
MluCI AATT 4 cut(s) 79, 131, 616, 747
MnlI CCTC 7 cut(s) 13, 93, 95, 521, 636, 639, 742
MroNI GCCGGC 1 cut(s) 703
MroXI GAANNNNTTC 2 cut(s) 167, 462
MslI CAYNNNNRTG 1 cut(s) 321
MspI CCGG 1 cut(s) 704
MspR9I CCNGG 1 cut(s) 184
MvaI CCWGG 1 cut(s) 184
MwoI GCNNNNNNNGC 1 cut(s) 569
NaeI GCCGGC 1 cut(s) 705
NdeII GATC 6 cut(s) 36, 349, 384, 417, 516, 625
NgoMIV GCCGGC 1 cut(s) 703
NlaIII CATG 5 cut(s) 115, 152, 160, 223, 490
NmuCI GTSAC 3 cut(s) 284, 364, 440
NspI RCATGY 2 cut(s) 152, 490
PaeI GCATGC 1 cut(s) 152
PaeR7I CTCGAG 1 cut(s) 630
PdiI GCCGGC 1 cut(s) 705
PdmI GAANNNNTTC 2 cut(s) 167, 462
PfeI GAWTC 2 cut(s) 163, 259
PkrI GCNGC 1 cut(s) 727
Psp124BI GAGCTC 1 cut(s) 656
Psp6I CCWGG 1 cut(s) 182
PspGI CCWGG 1 cut(s) 182
PstI CTGCAG 1 cut(s) 762
PsuI RGATCY 2 cut(s) 384, 417
RsaI GTAC 3 cut(s) 226, 240, 406
RsaNI GTAC 3 cut(s) 225, 239, 405
RseI CAYNNNNRTG 1 cut(s) 321
SacI GAGCTC 1 cut(s) 656
SatI GCNGC 1 cut(s) 726
Sau3AI GATC 6 cut(s) 36, 349, 384, 417, 516, 625
ScaI AGTACT 2 cut(s) 226, 406
ScrFI CCNGG 1 cut(s) 184
SduI GDGCHC 1 cut(s) 656
SetI ASST 9 cut(s) 256, 323, 336, 498, 656, 671, 727, 734, 773
SfcI CTRYAG 1 cut(s) 758
Sfr274I CTCGAG 1 cut(s) 630
SlaI CTCGAG 1 cut(s) 630
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 1 cut(s) 630
SmoI CTYRAG 1 cut(s) 630
SpeI ACTAGT 1 cut(s) 401
SphI GCATGC 1 cut(s) 152
Sse9I AATT 4 cut(s) 79, 131, 616, 747
SsiI CCGC 1 cut(s) 685
SspMI CTAG 1 cut(s) 402
SstI GAGCTC 1 cut(s) 656
StyD4I CCNGG 1 cut(s) 182
StyI CCWWGG 2 cut(s) 330, 573
TaaI ACNGT 3 cut(s) 430, 440, 712
TaiI ACGT 2 cut(s) 498, 671
TaqI TCGA 4 cut(s) 395, 479, 631, 679
TasI AATT 4 cut(s) 79, 131, 616, 747
TatI WGTACW 2 cut(s) 224, 404
TfiI GAWTC 2 cut(s) 163, 259
TseFI GTSAC 3 cut(s) 284, 364, 440
TseI GCWGC 1 cut(s) 725
Tsp45I GTSAC 3 cut(s) 284, 364, 440
TspDTI ATGAA 4 cut(s) 74, 272, 354, 471
TspGWI ACGGA 1 cut(s) 665
XceI RCATGY 2 cut(s) 152, 490
XhoI CTCGAG 1 cut(s) 630
XmnI GAANNNNTTC 2 cut(s) 167, 462
XspI CTAG 1 cut(s) 402
ZrmI AGTACT 2 cut(s) 226, 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.