FvH4_7g31950

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000119
Physical Location & Seq
Reverse (-)
23055443 .. 23059034
3592 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g31950.t1

Sequence Viewer

Length: 1968 bp
ATGGCTAAACATCAGGGACCAAACAATGAAATCCAAATGAGCATTACACCAGATGTGTCTCATGATTTCGGTAGTCCTGAGGCTCATCGAAAACCGACACCCGAACATGGACAACCTCAAGCAAGCAGCCAAAGATGGAATTGGCCAACAGTTGCCGGAGTTTCTTCAGATTTGAACCCATGGTGGAATAAGATACTGGTAACTTCATGTGTGATTGCAGTTTTATTTGATCCCTTGTTCTTTTACATTCCATACACCAGCGAGGAAAAAAAGTGTATGGGAAGCGACGAAAGAGTGCAGACTGCAGCTCTGATTTTCCGATCAGTCACAGACATCACTTTCCTGGTGCATATCATATACCAACTATATGTGGCTATCAAATTTGCACTCTCAAGGGTGGATGAAAGTTTGGTTTTTAGATATGAATCGGTATCCCGAGTGCAAATGATTCGGTTTGCAAAGGCATTTTCTCTCAAGTTGTCATGGCGATCTTTCCTAACTGACGTTTTCGCTATTTTGCCCATACCACAACTGCTAATAGTAGGATTGTTTTTCAACATCGGAGGCAATGACTACTTGTTAAGAAGAAAGATTGTGAGCGGTTTTCTTCTAGTCCAATATGTGCCAAGAATCTATCGAATTTATCTTTCATCTGTCGCGATTACAGAATCTGCATTATGGGTTAGAGGTGTATTTAACCTTTTCCTCTACATCCTTGCGAGTCATGCACTTGGAGCCTTTTGGTACTTTTTTTCTATTCAACGACAGACATCATGTTGGCATCGAACTTGCATCGCCGATTTAAATCGAACAGAATCAGAATGCACATTTTACTGTGATGACAGTACTGCTGCACTTATAACCGGTACCCCACAATTCAATACAACTCTAGACGAGCAATGCGTTCTAAAAGTTCCATATAACATGACCGATCCACCATTTGATTTTGGAATATTTTTTGATGCCCTCAAAAATGATATCCAAGGGAAAATAAATGTTCCACAAAAGATTGGTTACTGTTTTTGGTGGGGCTTGCGAAACTTGAGTAATTTTGGTACAAGTTTAACAACGAGTACCTATCTGTGGGAAAACAGCTTTGCCATTTTAATTTCTATCATCGGCTTGCTATTGTTTTTATACCTCATTGGAAATGTACAGATTTATATGGAGAGGGCAACTACCAGAGCGGATGAGGTAAGAGAGAAGCTTCGGATCAAAAAGAACGATATAGATGATTGGATCGAAAATAATGGTATCGGGAAGGACATGAAGGAAGAGATCATGAAAAACATCAAGGAGAAGTTGGAAAAGGACATAAGTGCAGATCTGGATGATATATACTCTATTCTTCCCCCGAATACCAGGAAAGTTGTGAAGCGATTTGTCGGCATGAGGACGCTAAGAAATGTACCAATGCTTAGCGAGGTGGATGGAAGAGTTTTGAAGATGATGTGCGACTATCTGAAGCCGGTCAAGTACCAGGAGAATACAATGGTTTTTAAAATGGGAAAACCATTTGATAGAATGGTCTTCATTACAGATGGGTCAATGTGGACTTACACGACTGCTACTGATCATCAGACTAGTGATTCTGGAAAAGCAACGTCAGGAGGACTAGTTACTTCTTCGTCCACGGAAGCTCACTTCCTCGAGAAGGGTGATGCTTATGGACACATGCTTCTGCAATTAGCATCATCATCTTTTACGACGCTTCCTATCTCAGATGCAAATGTCAAGTGCCACACAAAGGTAGAGGCGTTTGTCCTCATGGCCAGTGACTTGAGAAACATAGTAACTGAGTGCGGTCGGTGCGGTCGGTGCGGAGATTTGTGGCCGGATTTCAAGTATAATGCTTCTCAAGATGAGGAGGCTGTTCAGAAGGCACCGCCGGGGCACTTTCAGCAACAACAAGGGCCAAAGAAGCGTGGAACAACATCAAATATCCATCCTACCGGCTACAGTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

656

Amino Acids

74.53

Weight (kDa)

7.86

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 860
Acc65I GGTACC 1 cut(s) 866
AccB1I GGYRCC 2 cut(s) 866, 1882
AccBSI CCGCTC 2 cut(s) 600, 1187
AccII CGCG 1 cut(s) 659
AciI CCGC 6 cut(s) 600, 1187, 1803, 1812, 1821, 1886
AclWI GGATC 4 cut(s) 224, 926, 1220, 1247
AcoI YGGCCR 3 cut(s) 143, 1770, 1832
AcsI RAATTY 2 cut(s) 380, 639
AcuI CTGAAG 2 cut(s) 150, 1484
AfaI GTAC 8 cut(s) 746, 847, 868, 1057, 1075, 1155, 1410, 1478
AfiI CCNNNNNNNGG 4 cut(s) 107, 1083, 1654, 1747
AgeI ACCGGT 1 cut(s) 863
AgsI TTSAA 6 cut(s) 175, 556, 761, 880, 1444, 1843
AhlI ACTAGT 2 cut(s) 1583, 1615
AjnI CCWGG 3 cut(s) 342, 1361, 1479
AluBI AGCT 4 cut(s) 308, 1095, 1207, 1640
AluI AGCT 4 cut(s) 308, 1095, 1207, 1640
Alw26I GTCTC 1 cut(s) 63
AlwI GGATC 4 cut(s) 224, 926, 1220, 1247
AlwNI CAGNNNCTG 1 cut(s) 671
Ama87I CYCGRG 2 cut(s) 435, 1649
AoxI GGCC 4 cut(s) 143, 1770, 1832, 1913
ApeKI GCWGC 3 cut(s) 126, 305, 851
ApoI RAATTY 2 cut(s) 380, 639
AsiGI ACCGGT 1 cut(s) 863
Asp718I GGTACC 1 cut(s) 866
AspS9I GGNCC 2 cut(s) 17, 1913
AsuC2I CCSGG 1 cut(s) 1890
AsuHPI GGTGA 1 cut(s) 1670
AvaI CYCGRG 2 cut(s) 435, 1649
AvaII GGWCC 1 cut(s) 17
AxyI CCTNAGG 1 cut(s) 78
BaeGI GKGCMC 1 cut(s) 1896
BalI TGGCCA 2 cut(s) 145, 1772
BanI GGYRCC 2 cut(s) 866, 1882
BbsI GAAGAC 1 cut(s) 1522
BbvI GCAGC 3 cut(s) 138, 317, 838
BccI CCATC 4 cut(s) 129, 1424, 1535, 1953
BcgI CGANNNNNNTGC 2 cut(s) 431, 465
BciT130I CCWGG 3 cut(s) 344, 1363, 1481
BciVI GTATCC 1 cut(s) 442
BclI TGATCA 1 cut(s) 1573
BcnI CCSGG 1 cut(s) 1890
BcoDI GTCTC 1 cut(s) 63
BcuI ACTAGT 2 cut(s) 1583, 1615
BfaI CTAG 4 cut(s) 611, 890, 1584, 1616
BfmI CTRYAG 2 cut(s) 303, 1957
BfuI GTATCC 1 cut(s) 442
BglII AGATCT 1 cut(s) 1324
BisI GCNGC 3 cut(s) 127, 306, 852
BlpI GCTNAGC 1 cut(s) 1418
BlsI GCNGC 3 cut(s) 128, 307, 853
BmcAI AGTACT 1 cut(s) 847
Bme1390I CCNGG 4 cut(s) 344, 1363, 1481, 1890
Bme18I GGWCC 1 cut(s) 17
BmeT110I CYCGRG 2 cut(s) 435, 1649
BmgT120I GGNCC 2 cut(s) 17, 1913
BmiI GGNNCC 4 cut(s) 18, 736, 868, 1884
BmrFI CCNGG 4 cut(s) 344, 1363, 1481, 1890
BmsI GCATC 6 cut(s) 790, 801, 952, 1651, 1700, 1714
BpiI GAAGAC 1 cut(s) 1522
Bpu1102I GCTNAGC 1 cut(s) 1418
BpuEI CTTGAG 6 cut(s) 102, 376, 458, 1063, 1801, 1842
BpuMI CCSGG 1 cut(s) 1890
BsaBI GATNNNNATC 2 cut(s) 424, 804
BsaJI CCNNGG 4 cut(s) 179, 982, 1632, 1889
BsaWI WCCGGW 1 cut(s) 863
BsaXI ACNNNNNCTCC 2 cut(s) 1602, 1632
Bsc4I CCNNNNNNNGG 4 cut(s) 107, 1083, 1654, 1747
Bse118I RCCGGY 3 cut(s) 863, 1468, 1952
Bse1I ACTGG 2 cut(s) 201, 1773
Bse21I CCTNAGG 1 cut(s) 78
Bse3DI GCAATG 2 cut(s) 574, 905
Bse8I GATNNNNATC 2 cut(s) 424, 804
BseBI CCWGG 3 cut(s) 344, 1363, 1481
BseDI CCNNGG 4 cut(s) 179, 982, 1632, 1889
BseGI GGATG 6 cut(s) 406, 711, 1195, 1336, 1435, 1945
BseJI GATNNNNATC 2 cut(s) 424, 804
BseLI CCNNNNNNNGG 4 cut(s) 107, 1083, 1654, 1747
BseMI GCAATG 2 cut(s) 574, 905
BseMII CTCAG 3 cut(s) 69, 1734, 1788
BseNI ACTGG 2 cut(s) 201, 1773
BseRI GAGGAG 1 cut(s) 1880
BseSI GKGCMC 1 cut(s) 1896
BseXI GCAGC 3 cut(s) 138, 317, 838
BsgI GTGCAG 3 cut(s) 317, 837, 1341
Bsh1236I CGCG 1 cut(s) 659
Bsh1285I CGRYCG 2 cut(s) 1807, 1816
BshFI GGCC 4 cut(s) 145, 1772, 1834, 1915
BshNI GGYRCC 2 cut(s) 866, 1882
BshTI ACCGGT 1 cut(s) 863
BsiEI CGRYCG 2 cut(s) 1807, 1816
BsiHKCI CYCGRG 2 cut(s) 435, 1649
BsiSI CCGG 6 cut(s) 156, 864, 1469, 1835, 1889, 1953
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 4 cut(s) 107, 1083, 1654, 1747
BsmAI GTCTC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 30
BsmI GAATGC 1 cut(s) 827
BsnI GGCC 4 cut(s) 145, 1772, 1834, 1915
BsoBI CYCGRG 2 cut(s) 435, 1649
Bsp1286I GDGCHC 1 cut(s) 1896
Bsp1407I TGTACA 1 cut(s) 1153
Bsp143I GATC 9 cut(s) 229, 320, 488, 931, 1212, 1239, 1278, 1324, 1573
Bsp1720I GCTNAGC 1 cut(s) 1418
Bsp19I CCATGG 1 cut(s) 179
Bsp68I TCGCGA 1 cut(s) 659
BspACI CCGC 6 cut(s) 600, 1187, 1803, 1812, 1821, 1886
BspANI GGCC 4 cut(s) 145, 1772, 1834, 1915
BspCNI CTCAG 3 cut(s) 70, 1733, 1789
BspFNI CGCG 1 cut(s) 659
BspHI TCATGA 2 cut(s) 61, 1281
BspLI GGNNCC 4 cut(s) 18, 736, 868, 1884
BspMAI CTGCAG 1 cut(s) 307
BspPI GGATC 4 cut(s) 224, 926, 1220, 1247
BspT107I GGYRCC 2 cut(s) 866, 1882
BsrBI CCGCTC 2 cut(s) 600, 1187
BsrDI GCAATG 2 cut(s) 574, 905
BsrFI RCCGGY 3 cut(s) 863, 1468, 1952
BsrGI TGTACA 1 cut(s) 1153
BsrI ACTGG 2 cut(s) 201, 1773
BssAI RCCGGY 3 cut(s) 863, 1468, 1952
BssECI CCNNGG 4 cut(s) 179, 982, 1632, 1889
BssMI GATC 9 cut(s) 229, 320, 488, 931, 1212, 1239, 1278, 1324, 1573
BssT1I CCWWGG 2 cut(s) 179, 982
Bst2UI CCWGG 3 cut(s) 344, 1363, 1481
Bst4CI ACNGT 5 cut(s) 151, 836, 845, 1019, 1961
Bst6I CTCTTC 2 cut(s) 1269, 1429
BstAUI TGTACA 1 cut(s) 1153
BstC8I GCNNGC 3 cut(s) 124, 1034, 1124
BstDEI CTNAG 5 cut(s) 78, 1400, 1418, 1720, 1797
BstDSI CCRYGG 2 cut(s) 179, 1632
BstENI CCTNNNNNAGG 1 cut(s) 1652
BstF5I GGATG 6 cut(s) 406, 711, 1195, 1336, 1435, 1945
BstFNI CGCG 1 cut(s) 659
BstKTI GATC 9 cut(s) 232, 323, 491, 934, 1215, 1242, 1281, 1327, 1576
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 9 cut(s) 229, 320, 488, 931, 1212, 1239, 1278, 1324, 1573
BstMCI CGRYCG 2 cut(s) 1807, 1816
BstMWI GCNNNNNNNGC 6 cut(s) 725, 734, 1809, 1818, 1900, 1921
BstNI CCWGG 3 cut(s) 344, 1363, 1481
BstNSI RCATGY 1 cut(s) 1678
BstSCI CCNGG 4 cut(s) 342, 1361, 1479, 1888
BstSFI CTRYAG 2 cut(s) 303, 1957
BstSLI GKGCMC 1 cut(s) 1896
BstUI CGCG 1 cut(s) 659
BstV1I GCAGC 3 cut(s) 138, 317, 838
BstV2I GAAGAC 1 cut(s) 1522
BstX2I RGATCY 1 cut(s) 1324
BstYI RGATCY 1 cut(s) 1324
Bsu36I CCTNAGG 1 cut(s) 78
BsuI GTATCC 1 cut(s) 442
BsuRI GGCC 4 cut(s) 145, 1772, 1834, 1915
BtgI CCRYGG 2 cut(s) 179, 1632
BtgZI GCGATG 1 cut(s) 778
BtsCI GGATG 6 cut(s) 406, 711, 1195, 1336, 1435, 1945
BtsIMutI CAGTG 2 cut(s) 1780, 1966
BtuMI TCGCGA 1 cut(s) 659
Cac8I GCNNGC 3 cut(s) 124, 1034, 1124
CaiI CAGNNNCTG 1 cut(s) 671
CciI TCATGA 2 cut(s) 61, 1281
Cfr10I RCCGGY 3 cut(s) 863, 1468, 1952
Cfr13I GGNCC 2 cut(s) 17, 1913
CseI GACGC 2 cut(s) 1405, 1717
Csp6I GTAC 8 cut(s) 745, 846, 867, 1056, 1074, 1154, 1409, 1477
CspAI ACCGGT 1 cut(s) 863
CviQI GTAC 8 cut(s) 745, 846, 867, 1056, 1074, 1154, 1409, 1477
DdeI CTNAG 5 cut(s) 78, 1400, 1418, 1720, 1797
DpnI GATC 9 cut(s) 231, 322, 490, 933, 1214, 1241, 1280, 1326, 1575
DpnII GATC 9 cut(s) 229, 320, 488, 931, 1212, 1239, 1278, 1324, 1573
DraI TTTAAA 2 cut(s) 804, 1501
EaeI YGGCCR 3 cut(s) 143, 1770, 1832
Eam1104I CTCTTC 2 cut(s) 1269, 1429
EarI CTCTTC 2 cut(s) 1269, 1429
Eco130I CCWWGG 2 cut(s) 179, 982
Eco32I GATATC 1 cut(s) 979
Eco47I GGWCC 1 cut(s) 17
Eco57I CTGAAG 2 cut(s) 150, 1484
Eco81I CCTNAGG 1 cut(s) 78
Eco88I CYCGRG 2 cut(s) 435, 1649
EcoNI CCTNNNNNAGG 1 cut(s) 1652
EcoRII CCWGG 3 cut(s) 342, 1361, 1479
EcoRV GATATC 1 cut(s) 979
EcoT14I CCWWGG 2 cut(s) 179, 982
ErhI CCWWGG 2 cut(s) 179, 982
FaqI GGGAC 1 cut(s) 30
FbaI TGATCA 1 cut(s) 1573
Fnu4HI GCNGC 3 cut(s) 127, 306, 852
FokI GGATG 6 cut(s) 413, 698, 1202, 1343, 1442, 1932
Fsp4HI GCNGC 3 cut(s) 127, 306, 852
FspBI CTAG 4 cut(s) 611, 890, 1584, 1616
GluI GCNGC 3 cut(s) 127, 306, 852
HaeIII GGCC 4 cut(s) 145, 1772, 1834, 1915
HapII CCGG 6 cut(s) 156, 864, 1469, 1835, 1889, 1953
HgaI GACGC 2 cut(s) 1405, 1717
HindIII AAGCTT 1 cut(s) 1205
HinfI GANTC 7 cut(s) 425, 448, 630, 668, 721, 815, 1589
HpaII CCGG 6 cut(s) 156, 864, 1469, 1835, 1889, 1953
HphI GGTGA 1 cut(s) 1670
Hpy166II GTNNAC 2 cut(s) 1554, 1632
Hpy8I GTNNAC 2 cut(s) 1554, 1632
Hpy99I CGWCG 2 cut(s) 290, 1711
HpyAV CCTTC 4 cut(s) 1255, 1264, 1648, 1873
HpyCH4III ACNGT 5 cut(s) 151, 836, 845, 1019, 1961
HpyCH4IV ACGT 2 cut(s) 504, 1604
HpyF10VI GCNNNNNNNGC 6 cut(s) 725, 734, 1809, 1818, 1900, 1921
HpyF3I CTNAG 5 cut(s) 78, 1400, 1418, 1720, 1797
HpySE526I ACGT 2 cut(s) 504, 1604
KpnI GGTACC 1 cut(s) 870
Ksp22I TGATCA 1 cut(s) 1573
Kzo9I GATC 9 cut(s) 229, 320, 488, 931, 1212, 1239, 1278, 1324, 1573
LmnI GCTCC 1 cut(s) 734
Lsp1109I GCAGC 3 cut(s) 138, 317, 838
LweI GCATC 6 cut(s) 790, 801, 952, 1651, 1700, 1714
MaeI CTAG 4 cut(s) 611, 890, 1584, 1616
MaeII ACGT 2 cut(s) 504, 1604
MaeIII GTNAC 6 cut(s) 199, 325, 1013, 1618, 1775, 1792
MalI GATC 9 cut(s) 231, 322, 490, 933, 1214, 1241, 1280, 1326, 1575
MbiI CCGCTC 2 cut(s) 600, 1187
MboI GATC 9 cut(s) 229, 320, 488, 931, 1212, 1239, 1278, 1324, 1573
MboII GAAGA 9 cut(s) 156, 597, 599, 1286, 1340, 1446, 1456, 1522, 1617
MflI RGATCY 1 cut(s) 1324
MhlI GDGCHC 1 cut(s) 1896
MlsI TGGCCA 2 cut(s) 145, 1772
MluCI AATT 7 cut(s) 139, 380, 639, 875, 1048, 1107, 1685
MluNI TGGCCA 2 cut(s) 145, 1772
MlyI GAGTC 1 cut(s) 730
MmeI TCCRAC 1 cut(s) 1284
Mox20I TGGCCA 2 cut(s) 145, 1772
MscI TGGCCA 2 cut(s) 145, 1772
MseI TTAA 6 cut(s) 581, 696, 803, 1064, 1106, 1500
Msp20I TGGCCA 2 cut(s) 145, 1772
MspI CCGG 6 cut(s) 156, 864, 1469, 1835, 1889, 1953
MspR9I CCNGG 4 cut(s) 344, 1363, 1481, 1890
Mva1269I GAATGC 1 cut(s) 827
MvaI CCWGG 3 cut(s) 344, 1363, 1481
MvnI CGCG 1 cut(s) 659
MwoI GCNNNNNNNGC 6 cut(s) 725, 734, 1809, 1818, 1900, 1921
NciI CCSGG 1 cut(s) 1890
NcoI CCATGG 1 cut(s) 179
NdeII GATC 9 cut(s) 229, 320, 488, 931, 1212, 1239, 1278, 1324, 1573
NlaIV GGNNCC 4 cut(s) 18, 736, 868, 1884
NmuCI GTSAC 2 cut(s) 325, 1775
NruI TCGCGA 1 cut(s) 659
NspI RCATGY 1 cut(s) 1678
PaeR7I CTCGAG 1 cut(s) 1649
PagI TCATGA 2 cut(s) 61, 1281
PcsI WCGNNNNNNNCGW 1 cut(s) 900
PctI GAATGC 1 cut(s) 827
PfeI GAWTC 6 cut(s) 425, 448, 630, 668, 815, 1589
PinAI ACCGGT 1 cut(s) 863
PkrI GCNGC 3 cut(s) 128, 307, 853
PleI GAGTC 1 cut(s) 729
PpsI GAGTC 1 cut(s) 729
PsiI TTATAA 1 cut(s) 860
Psp6I CCWGG 3 cut(s) 342, 1361, 1479
PspGI CCWGG 3 cut(s) 342, 1361, 1479
PspN4I GGNNCC 4 cut(s) 18, 736, 868, 1884
PspPI GGNCC 2 cut(s) 17, 1913
PstI CTGCAG 1 cut(s) 307
PstNI CAGNNNCTG 1 cut(s) 671
PsuI RGATCY 1 cut(s) 1324
RruI TCGCGA 1 cut(s) 659
RsaI GTAC 8 cut(s) 746, 847, 868, 1057, 1075, 1155, 1410, 1478
RsaNI GTAC 8 cut(s) 745, 846, 867, 1056, 1074, 1154, 1409, 1477
SaqAI TTAA 6 cut(s) 581, 696, 803, 1064, 1106, 1500
SatI GCNGC 3 cut(s) 127, 306, 852
Sau3AI GATC 9 cut(s) 229, 320, 488, 931, 1212, 1239, 1278, 1324, 1573
Sau96I GGNCC 2 cut(s) 17, 1913
ScaI AGTACT 1 cut(s) 847
SchI GAGTC 1 cut(s) 730
ScrFI CCNGG 4 cut(s) 344, 1363, 1481, 1890
SduI GDGCHC 1 cut(s) 1896
SfaNI GCATC 6 cut(s) 790, 801, 952, 1651, 1700, 1714
SfcI CTRYAG 2 cut(s) 303, 1957
Sfr274I CTCGAG 1 cut(s) 1649
SinI GGWCC 1 cut(s) 17
SlaI CTCGAG 1 cut(s) 1649
SmiI ATTTAAAT 1 cut(s) 804
SmlI CTYRAG 7 cut(s) 117, 391, 473, 1042, 1649, 1780, 1857
SmoI CTYRAG 7 cut(s) 117, 391, 473, 1042, 1649, 1780, 1857
SpeI ACTAGT 2 cut(s) 1583, 1615
Sse9I AATT 7 cut(s) 139, 380, 639, 875, 1048, 1107, 1685
SsiI CCGC 6 cut(s) 600, 1187, 1803, 1812, 1821, 1886
SspI AATATT 1 cut(s) 954
SspMI CTAG 4 cut(s) 611, 890, 1584, 1616
StyD4I CCNGG 4 cut(s) 342, 1361, 1479, 1888
StyI CCWWGG 2 cut(s) 179, 982
SwaI ATTTAAAT 1 cut(s) 804
TaaI ACNGT 5 cut(s) 151, 836, 845, 1019, 1961
TaiI ACGT 2 cut(s) 507, 1607
TaqI TCGA 6 cut(s) 88, 637, 784, 808, 1242, 1650
TaqII GACCGA 1 cut(s) 944
TasI AATT 7 cut(s) 139, 380, 639, 875, 1048, 1107, 1685
TatI WGTACW 2 cut(s) 845, 1153
TfiI GAWTC 6 cut(s) 425, 448, 630, 668, 815, 1589
Tru1I TTAA 6 cut(s) 581, 696, 803, 1064, 1106, 1500
Tru9I TTAA 6 cut(s) 581, 696, 803, 1064, 1106, 1500
TscAI CASTG 2 cut(s) 1780, 1966
TseFI GTSAC 2 cut(s) 325, 1775
TseI GCWGC 3 cut(s) 126, 305, 851
Tsp45I GTSAC 2 cut(s) 325, 1775
TspDTI ATGAA 8 cut(s) 42, 195, 417, 438, 639, 1283, 1298, 1522
TspGWI ACGGA 1 cut(s) 1649
TspRI CASTG 2 cut(s) 1780, 1966
VpaK11BI GGWCC 1 cut(s) 17
XagI CCTNNNNNAGG 1 cut(s) 1652
XapI RAATTY 2 cut(s) 380, 639
XbaI TCTAGA 1 cut(s) 889
XceI RCATGY 1 cut(s) 1678
XhoI CTCGAG 1 cut(s) 1649
XspI CTAG 4 cut(s) 611, 890, 1584, 1616
ZrmI AGTACT 1 cut(s) 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.