RchiOBHm_Chr4g0409521

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000119
Physical Location & Seq
Forward (+)
32935192 .. 32941444
6253 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38051

Sequence Viewer

Length: 375 bp
ATGAAGCATAATACAAGTGAATGCAATTTTTATTGCAATCAAGACATTTCCTCTAGAAATATGACATTCATTCGTTCTCTAGATGAATTTTGCCTTGTTGATGTTCCGGCAAATGCGACCGCACCATTTCATTTTGGAATATTTCTTGATTCCCTTAAGAGTGGTAACATGGGGCAAATAAATTTCGCAAAGAAGATCTCTTACTCTTTTTGGTGGGGACTACGAAATCTTAGTAACTTTGGGACGAACTTGGAAACAAGTACGTATGTGTGGGAAAACTGCTTTGCGATCCTTACATCTACTGTTGGCTTGCTTCTTTTCTTATATCTCATTGGCAAAGTACAGGTCAGTGAACTTATCTTCTCATCTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

124

Amino Acids

14.08

Weight (kDa)

6.04

Isoelectric Point (pI)

32.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 120
AclWI GGATC 1 cut(s) 283
AcsI RAATTY 2 cut(s) 86, 181
AfaI GTAC 2 cut(s) 262, 342
AflII CTTAAG 1 cut(s) 155
AlwI GGATC 1 cut(s) 283
ApoI RAATTY 2 cut(s) 86, 181
ArsI GACNNNNNNTTYG 2 cut(s) 330, 362
BarI GAAGNNNNNNTAC 2 cut(s) 185, 217
BfaI CTAG 3 cut(s) 54, 80, 369
BfrI CTTAAG 1 cut(s) 155
BglII AGATCT 1 cut(s) 195
BsaAI YACGTR 1 cut(s) 264
Bsh1285I CGRYCG 1 cut(s) 120
BsiEI CGRYCG 1 cut(s) 120
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 2 cut(s) 231, 256
BsmFI GGGAC 2 cut(s) 231, 256
BsmI GAATGC 1 cut(s) 26
Bsp143I GATC 2 cut(s) 195, 288
BspACI CCGC 1 cut(s) 120
BspPI GGATC 1 cut(s) 283
BspTI CTTAAG 1 cut(s) 155
BssMI GATC 2 cut(s) 195, 288
Bst4CI ACNGT 1 cut(s) 304
BstAFI CTTAAG 1 cut(s) 155
BstBAI YACGTR 1 cut(s) 264
BstC8I GCNNGC 1 cut(s) 311
BstDEI CTNAG 1 cut(s) 230
BstKTI GATC 2 cut(s) 198, 291
BstMBI GATC 2 cut(s) 195, 288
BstMCI CGRYCG 1 cut(s) 120
BstSNI TACGTA 1 cut(s) 264
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 355
Cac8I GCNNGC 1 cut(s) 311
Csp6I GTAC 2 cut(s) 261, 341
CviAII CATG 1 cut(s) 169
CviJI RGCY 1 cut(s) 309
CviKI_1 RGCY 1 cut(s) 309
CviQI GTAC 2 cut(s) 261, 341
DdeI CTNAG 1 cut(s) 230
DpnI GATC 2 cut(s) 197, 290
DpnII GATC 2 cut(s) 195, 288
Eco105I TACGTA 1 cut(s) 264
FaeI CATG 1 cut(s) 172
FaiI YATR 5 cut(s) 9, 62, 170, 267, 325
FaqI GGGAC 2 cut(s) 231, 256
FatI CATG 1 cut(s) 168
FspBI CTAG 3 cut(s) 54, 80, 369
HapII CCGG 1 cut(s) 107
Hin1II CATG 1 cut(s) 172
HinfI GANTC 1 cut(s) 149
HpaII CCGG 1 cut(s) 107
Hpy166II GTNNAC 1 cut(s) 353
Hpy188III TCNNGA 4 cut(s) 41, 54, 80, 146
Hpy8I GTNNAC 1 cut(s) 353
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4IV ACGT 1 cut(s) 263
HpyCH4V TGCA 2 cut(s) 24, 36
HpyF3I CTNAG 1 cut(s) 230
HpySE526I ACGT 1 cut(s) 263
Hsp92II CATG 1 cut(s) 172
Kzo9I GATC 2 cut(s) 195, 288
LpnPI CCDG 2 cut(s) 120, 329
MaeI CTAG 3 cut(s) 54, 80, 369
MaeII ACGT 1 cut(s) 263
MaeIII GTNAC 2 cut(s) 164, 233
MalI GATC 2 cut(s) 197, 290
MboI GATC 2 cut(s) 195, 288
MboII GAAGA 2 cut(s) 205, 352
MflI RGATCY 1 cut(s) 195
MluCI AATT 3 cut(s) 25, 86, 181
MnlI CCTC 1 cut(s) 61
MseI TTAA 1 cut(s) 156
MspCI CTTAAG 1 cut(s) 155
MspI CCGG 1 cut(s) 107
Mva1269I GAATGC 1 cut(s) 26
NdeII GATC 2 cut(s) 195, 288
NlaIII CATG 1 cut(s) 172
PctI GAATGC 1 cut(s) 26
PfeI GAWTC 1 cut(s) 149
Ppu21I YACGTR 1 cut(s) 264
PsuI RGATCY 1 cut(s) 195
RsaI GTAC 2 cut(s) 262, 342
RsaNI GTAC 2 cut(s) 261, 341
SaqAI TTAA 1 cut(s) 156
Sau3AI GATC 2 cut(s) 195, 288
SetI ASST 2 cut(s) 266, 348
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
SnaBI TACGTA 1 cut(s) 264
Sse9I AATT 3 cut(s) 25, 86, 181
SsiI CCGC 1 cut(s) 120
SspI AATATT 1 cut(s) 141
SspMI CTAG 3 cut(s) 54, 80, 369
TaaI ACNGT 1 cut(s) 304
TaiI ACGT 1 cut(s) 266
TasI AATT 3 cut(s) 25, 86, 181
TatI WGTACW 1 cut(s) 340
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 1 cut(s) 355
TspDTI ATGAA 4 cut(s) 17, 58, 99, 119
TspRI CASTG 1 cut(s) 355
Vha464I CTTAAG 1 cut(s) 155
XapI RAATTY 2 cut(s) 86, 181
XbaI TCTAGA 2 cut(s) 53, 79
XspI CTAG 3 cut(s) 54, 80, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.