Rw4G012810

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000119
Physical Location & Seq
Forward (+)
30118899 .. 30121778
2880 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G012810.1

Sequence Viewer

Length: 777 bp
ATGACAAGTAAAGGAAAGCAGATAATTCCCAGAAGTTGGTTCCTTAAGGAATTAGCTCGAAAGATGCCATGGCACTCGATTACAATTGATATTCTTGCGGTTCTCCCTATCCCACAAGTGCTAGTGACTGTTTTCTTCAAAATGAGAAGCTCCAAATATCTTGGCCGAAGAAAGATTATTGTTGTCTTTCTTCTTGCCCAATATTTACCAAGAATTTATCGTATGCACCATTCTTCACAGAAATTCAAGCAAAGTAAGGAAGCATGGATCCAAGGTGTATTCTATTTTTTCTTGTATATCCTCGCCAGTCATGTGCTGGGAGGTTTTTGGTATTTTTTCTCTATTCAACGAGAGACAGCATGTTGGTACCAAGCTTGTATGAAGCATAGTACAAGTGAATGCAATTTTTATTGCAATCAAGACATTTCCTCTAGAAATATGACATTCATTAGTTCTCTAGATGAATTTTTCCTTGTTGATGTTCCGGCAAATGCGACCGCACCATTTCATTTTGGAATATTTCTTGATTCCCTTAAAAGTGGAAACACGGGGCAAATAAATTTCGCAAAGAAGATCTCTTACTCATTTTGGTGGGGACTACGAATTCTTAGTAACTTTGGGACGAACTTGGAAACAAGTACGTATGTGTGGGAAAACTGCTTTGCGATCCTCACATCTACTGTTGGCTTGCTTCTTTTCTTATATCTCATTGGCAAAGTACAGATTATAAGTATGAACGGTTCAAGTTTGATAGATTTGGTTCGTTCGTTGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

258

Amino Acids

29.94

Weight (kDa)

9.64

Isoelectric Point (pI)

42.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 728
Acc65I GGTACC 1 cut(s) 366
AccB1I GGYRCC 1 cut(s) 366
AccB7I CCANNNNNTGG 1 cut(s) 36
AciI CCGC 2 cut(s) 98, 498
AclWI GGATC 3 cut(s) 262, 275, 661
AcoI YGGCCR 1 cut(s) 163
AcsI RAATTY 5 cut(s) 213, 242, 464, 559, 603
AfaI GTAC 4 cut(s) 368, 391, 640, 720
AfiI CCNNNNNNNGG 1 cut(s) 36
AflII CTTAAG 1 cut(s) 44
AgsI TTSAA 4 cut(s) 139, 247, 347, 744
AluBI AGCT 3 cut(s) 56, 150, 374
AluI AGCT 3 cut(s) 56, 150, 374
Alw26I GTCTC 1 cut(s) 347
AlwI GGATC 3 cut(s) 262, 275, 661
AoxI GGCC 1 cut(s) 163
ApoI RAATTY 5 cut(s) 213, 242, 464, 559, 603
Asp718I GGTACC 1 cut(s) 366
BamHI GGATCC 1 cut(s) 267
BanI GGYRCC 1 cut(s) 366
BarI GAAGNNNNNNTAC 2 cut(s) 563, 595
BcoDI GTCTC 1 cut(s) 347
BfaI CTAG 3 cut(s) 122, 432, 458
BfrI CTTAAG 1 cut(s) 44
BglII AGATCT 1 cut(s) 573
BmiI GGNNCC 3 cut(s) 41, 269, 368
BmsI GCATC 1 cut(s) 54
BsaAI YACGTR 1 cut(s) 642
BsaJI CCNNGG 2 cut(s) 68, 271
Bsc4I CCNNNNNNNGG 1 cut(s) 36
Bse1I ACTGG 1 cut(s) 306
BseDI CCNNGG 2 cut(s) 68, 271
BseLI CCNNNNNNNGG 1 cut(s) 36
BseNI ACTGG 1 cut(s) 306
BseYI CCCAGC 1 cut(s) 316
Bsh1285I CGRYCG 1 cut(s) 498
BshFI GGCC 1 cut(s) 165
BshNI GGYRCC 1 cut(s) 366
BsiEI CGRYCG 1 cut(s) 498
BsiSI CCGG 1 cut(s) 485
BslFI GGGAC 2 cut(s) 609, 634
BslI CCNNNNNNNGG 1 cut(s) 36
BsmAI GTCTC 1 cut(s) 347
BsmFI GGGAC 2 cut(s) 609, 634
BsmI GAATGC 1 cut(s) 404
BsnI GGCC 1 cut(s) 165
Bsp143I GATC 3 cut(s) 267, 573, 666
Bsp19I CCATGG 1 cut(s) 68
BspACI CCGC 2 cut(s) 98, 498
BspANI GGCC 1 cut(s) 165
BspLI GGNNCC 3 cut(s) 41, 269, 368
BspPI GGATC 3 cut(s) 262, 275, 661
BspT107I GGYRCC 1 cut(s) 366
BspTI CTTAAG 1 cut(s) 44
BsrI ACTGG 1 cut(s) 306
BssECI CCNNGG 2 cut(s) 68, 271
BssMI GATC 3 cut(s) 267, 573, 666
BssT1I CCWWGG 2 cut(s) 68, 271
Bst4CI ACNGT 3 cut(s) 130, 682, 740
BstAFI CTTAAG 1 cut(s) 44
BstBAI YACGTR 1 cut(s) 642
BstC8I GCNNGC 1 cut(s) 689
BstDEI CTNAG 1 cut(s) 608
BstDSI CCRYGG 1 cut(s) 68
BstKTI GATC 3 cut(s) 270, 576, 669
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 3 cut(s) 267, 573, 666
BstMCI CGRYCG 1 cut(s) 498
BstNSI RCATGY 1 cut(s) 363
BstSNI TACGTA 1 cut(s) 642
BstX2I RGATCY 2 cut(s) 267, 573
BstYI RGATCY 2 cut(s) 267, 573
BsuRI GGCC 1 cut(s) 165
BtgI CCRYGG 1 cut(s) 68
Cac8I GCNNGC 1 cut(s) 689
Csp6I GTAC 4 cut(s) 367, 390, 639, 719
CviAII CATG 4 cut(s) 69, 264, 311, 360
CviJI RGCY 5 cut(s) 56, 150, 165, 374, 687
CviKI_1 RGCY 5 cut(s) 56, 150, 165, 374, 687
CviQI GTAC 4 cut(s) 367, 390, 639, 719
DdeI CTNAG 1 cut(s) 608
DpnI GATC 3 cut(s) 269, 575, 668
DpnII GATC 3 cut(s) 267, 573, 666
EaeI YGGCCR 1 cut(s) 163
Eco105I TACGTA 1 cut(s) 642
Eco130I CCWWGG 2 cut(s) 68, 271
EcoRI GAATTC 1 cut(s) 603
EcoT14I CCWWGG 2 cut(s) 68, 271
ErhI CCWWGG 2 cut(s) 68, 271
FaeI CATG 4 cut(s) 72, 267, 314, 363
FaqI GGGAC 2 cut(s) 609, 634
FatI CATG 4 cut(s) 68, 263, 310, 359
FspBI CTAG 3 cut(s) 122, 432, 458
GsaI CCCAGC 1 cut(s) 320
HaeIII GGCC 1 cut(s) 165
HapII CCGG 1 cut(s) 485
Hin1II CATG 4 cut(s) 72, 267, 314, 363
HindIII AAGCTT 1 cut(s) 372
HinfI GANTC 1 cut(s) 527
HpaII CCGG 1 cut(s) 485
Hpy188III TCNNGA 4 cut(s) 419, 432, 458, 524
HpyCH4III ACNGT 3 cut(s) 130, 682, 740
HpyCH4IV ACGT 1 cut(s) 641
HpyCH4V TGCA 3 cut(s) 226, 402, 414
HpyF3I CTNAG 1 cut(s) 608
HpySE526I ACGT 1 cut(s) 641
Hsp92II CATG 4 cut(s) 72, 267, 314, 363
KpnI GGTACC 1 cut(s) 370
Kzo9I GATC 3 cut(s) 267, 573, 666
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 4 cut(s) 43, 302, 319, 498
LweI GCATC 1 cut(s) 54
MaeI CTAG 3 cut(s) 122, 432, 458
MaeII ACGT 1 cut(s) 641
MaeIII GTNAC 2 cut(s) 124, 611
MalI GATC 3 cut(s) 269, 575, 668
MboI GATC 3 cut(s) 267, 573, 666
MboII GAAGA 5 cut(s) 127, 180, 182, 225, 583
MfeI CAATTG 1 cut(s) 84
MflI RGATCY 2 cut(s) 267, 573
MluCI AATT 9 cut(s) 24, 50, 84, 213, 242, 403, 464, 559, 603
MnlI CCTC 4 cut(s) 311, 314, 439, 680
MseI TTAA 3 cut(s) 45, 534, 775
MslI CAYNNNNRTG 1 cut(s) 589
MspCI CTTAAG 1 cut(s) 44
MspI CCGG 1 cut(s) 485
MunI CAATTG 1 cut(s) 84
Mva1269I GAATGC 1 cut(s) 404
NcoI CCATGG 1 cut(s) 68
NdeII GATC 3 cut(s) 267, 573, 666
NlaIII CATG 4 cut(s) 72, 267, 314, 363
NlaIV GGNNCC 3 cut(s) 41, 269, 368
NmuCI GTSAC 1 cut(s) 124
NspI RCATGY 1 cut(s) 363
PctI GAATGC 1 cut(s) 404
PfeI GAWTC 1 cut(s) 527
PflMI CCANNNNNTGG 1 cut(s) 36
Ppu21I YACGTR 1 cut(s) 642
PsiI TTATAA 1 cut(s) 728
PspFI CCCAGC 1 cut(s) 316
PspN4I GGNNCC 3 cut(s) 41, 269, 368
PsrI GAACNNNNNNTAC 2 cut(s) 724, 756
PsuI RGATCY 2 cut(s) 267, 573
RsaI GTAC 4 cut(s) 368, 391, 640, 720
RsaNI GTAC 4 cut(s) 367, 390, 639, 719
RseI CAYNNNNRTG 1 cut(s) 589
SaqAI TTAA 3 cut(s) 45, 534, 775
Sau3AI GATC 3 cut(s) 267, 573, 666
SetI ASST 6 cut(s) 58, 152, 277, 325, 376, 644
SfaNI GCATC 1 cut(s) 54
SmiMI CAYNNNNRTG 1 cut(s) 589
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
SnaBI TACGTA 1 cut(s) 642
Sse9I AATT 9 cut(s) 24, 50, 84, 213, 242, 403, 464, 559, 603
SsiI CCGC 2 cut(s) 98, 498
SspI AATATT 2 cut(s) 203, 519
SspMI CTAG 3 cut(s) 122, 432, 458
StyI CCWWGG 2 cut(s) 68, 271
TaaI ACNGT 3 cut(s) 130, 682, 740
TaiI ACGT 1 cut(s) 644
TaqI TCGA 2 cut(s) 58, 77
TasI AATT 9 cut(s) 24, 50, 84, 213, 242, 403, 464, 559, 603
TatI WGTACW 2 cut(s) 389, 718
TfiI GAWTC 1 cut(s) 527
Tru1I TTAA 3 cut(s) 45, 534, 775
Tru9I TTAA 3 cut(s) 45, 534, 775
TseFI GTSAC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 5 cut(s) 395, 436, 477, 497, 749
Van91I CCANNNNNTGG 1 cut(s) 36
Vha464I CTTAAG 1 cut(s) 44
XapI RAATTY 5 cut(s) 213, 242, 464, 559, 603
XbaI TCTAGA 2 cut(s) 431, 457
XceI RCATGY 1 cut(s) 363
XcmI CCANNNNNNNNNTGG 1 cut(s) 313
XspI CTAG 3 cut(s) 122, 432, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.