pycom07g26490

voltage-gated potassium channel activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000119
Physical Location & Seq
Reverse (-)
26480944 .. 26481319
376 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g26490.2

Sequence Viewer

Length: 327 bp
ATGTGCTTAAAGACGGATGAAAAAGTGTTGACGTTCATATGCGACTATCTAAAGCCAGTGATATACAAAGTTCGTTTTTCGAATGGAAGATCGACTCGATTTGATAGTCATGGTGGGCAAAGAATCTCATCAATGGCCATCAAGCCCCTCGGGAAAGGTCACTTTTATGGGGAAGAACTTCTCGATTGGGCAAAGTGTTTCATCGAAGTTCCAGTCTCCAACAAACATGTCAAAACGGACAAAAGTAGAAGCATTTGTGCTCATGTCCCAGAACTTGGAAACTGTAGTCTCCAGATGCAAAACATATTGAGAATTGCGCAATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

109

Amino Acids

12.29

Weight (kDa)

9.22

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 318
AccB7I CCANNNNNTGG 1 cut(s) 275
AcoI YGGCCR 1 cut(s) 135
AfiI CCNNNNNNNGG 1 cut(s) 275
AflIII ACRYGT 1 cut(s) 226
Alw21I GWGCWC 1 cut(s) 262
Alw26I GTCTC 2 cut(s) 220, 293
Ama87I CYCGRG 1 cut(s) 149
AoxI GGCC 1 cut(s) 135
ArsI GACNNNNNNTTYG 2 cut(s) 198, 230
Asp700I GAANNNNTTC 1 cut(s) 177
AspLEI GCGC 1 cut(s) 319
AsuII TTCGAA 1 cut(s) 80
AvaI CYCGRG 1 cut(s) 149
BalI TGGCCA 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 262
BccI CCATC 1 cut(s) 146
BcoDI GTCTC 2 cut(s) 220, 293
BfmI CTRYAG 1 cut(s) 283
BmeT110I CYCGRG 1 cut(s) 149
BmsI GCATC 1 cut(s) 285
BpmI CTGGAG 1 cut(s) 275
Bpu14I TTCGAA 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse1I ACTGG 2 cut(s) 56, 212
BseDI CCNNGG 1 cut(s) 148
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 1 cut(s) 275
BseNI ACTGG 2 cut(s) 56, 212
BshFI GGCC 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 262
BsiHKCI CYCGRG 1 cut(s) 149
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 275
BsmAI GTCTC 2 cut(s) 220, 293
BsmFI GGGAC 1 cut(s) 251
BsnI GGCC 1 cut(s) 137
BsoBI CYCGRG 1 cut(s) 149
Bsp119I TTCGAA 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 262
Bsp143I GATC 1 cut(s) 89
BspANI GGCC 1 cut(s) 137
BspT104I TTCGAA 1 cut(s) 80
BsrI ACTGG 2 cut(s) 56, 212
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 1 cut(s) 89
Bst4CI ACNGT 1 cut(s) 284
BstBI TTCGAA 1 cut(s) 80
BstF5I GGATG 1 cut(s) 22
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 1 cut(s) 92
BstMAI GTCTC 2 cut(s) 220, 293
BstMBI GATC 1 cut(s) 89
BstNSI RCATGY 1 cut(s) 230
BstSFI CTRYAG 1 cut(s) 283
BsuRI GGCC 1 cut(s) 137
BtsCI GGATG 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 63
CfoI GCGC 1 cut(s) 319
CviAII CATG 3 cut(s) 110, 227, 263
CviJI RGCY 3 cut(s) 55, 137, 145
CviKI_1 RGCY 3 cut(s) 55, 137, 145
DpnI GATC 1 cut(s) 91
DpnII GATC 1 cut(s) 89
EaeI YGGCCR 1 cut(s) 135
Eco88I CYCGRG 1 cut(s) 149
FaeI CATG 3 cut(s) 113, 230, 266
FaiI YATR 8 cut(s) 38, 40, 64, 111, 168, 228, 264, 305
FaqI GGGAC 1 cut(s) 251
FatI CATG 3 cut(s) 109, 226, 262
FauNDI CATATG 1 cut(s) 38
FokI GGATG 1 cut(s) 29
FspI TGCGCA 1 cut(s) 318
GlaI GCGC 1 cut(s) 318
GsuI CTGGAG 1 cut(s) 275
HaeIII GGCC 1 cut(s) 137
HhaI GCGC 1 cut(s) 319
Hin1II CATG 3 cut(s) 113, 230, 266
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 2 cut(s) 94, 123
Hpy166II GTNNAC 1 cut(s) 30
Hpy188III TCNNGA 3 cut(s) 151, 182, 292
Hpy8I GTNNAC 1 cut(s) 30
HpyCH4III ACNGT 1 cut(s) 284
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 1 cut(s) 298
HpySE526I ACGT 1 cut(s) 32
Hsp92II CATG 3 cut(s) 113, 230, 266
HspAI GCGC 1 cut(s) 317
Kzo9I GATC 1 cut(s) 89
LpnPI CCDG 4 cut(s) 69, 225, 282, 305
LweI GCATC 1 cut(s) 285
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 158
MalI GATC 1 cut(s) 91
MboI GATC 1 cut(s) 89
MboII GAAGA 2 cut(s) 99, 185
MfeI CAATTG 1 cut(s) 320
MhlI GDGCHC 1 cut(s) 262
MlsI TGGCCA 1 cut(s) 137
MluCI AATT 2 cut(s) 312, 320
MluNI TGGCCA 1 cut(s) 137
MlyI GAGTC 1 cut(s) 88
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 1 cut(s) 158
Mox20I TGGCCA 1 cut(s) 137
MroXI GAANNNNTTC 1 cut(s) 177
MscI TGGCCA 1 cut(s) 137
MseI TTAA 1 cut(s) 8
MslI CAYNNNNRTG 1 cut(s) 165
Msp20I TGGCCA 1 cut(s) 137
MunI CAATTG 1 cut(s) 320
NdeI CATATG 1 cut(s) 38
NdeII GATC 1 cut(s) 89
NlaIII CATG 3 cut(s) 113, 230, 266
NmuCI GTSAC 1 cut(s) 158
NsbI TGCGCA 1 cut(s) 318
NspI RCATGY 1 cut(s) 230
NspV TTCGAA 1 cut(s) 80
PciI ACATGT 1 cut(s) 226
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 123
PflMI CCANNNNNTGG 1 cut(s) 275
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PscI ACATGT 1 cut(s) 226
RseI CAYNNNNRTG 1 cut(s) 165
SaqAI TTAA 1 cut(s) 8
Sau3AI GATC 1 cut(s) 89
SchI GAGTC 1 cut(s) 88
SduI GDGCHC 1 cut(s) 262
SetI ASST 2 cut(s) 35, 160
SfaNI GCATC 1 cut(s) 285
SfcI CTRYAG 1 cut(s) 283
SfuI TTCGAA 1 cut(s) 80
SmiMI CAYNNNNRTG 1 cut(s) 165
Sse9I AATT 2 cut(s) 312, 320
TaaI ACNGT 1 cut(s) 284
TaiI ACGT 1 cut(s) 35
TaqI TCGA 5 cut(s) 80, 92, 97, 183, 204
TasI AATT 2 cut(s) 312, 320
TfiI GAWTC 1 cut(s) 123
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TscAI CASTG 1 cut(s) 63
TseFI GTSAC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 158
TspDTI ATGAA 3 cut(s) 25, 33, 190
TspGWI ACGGA 2 cut(s) 29, 251
TspRI CASTG 1 cut(s) 63
Van91I CCANNNNNTGG 1 cut(s) 275
XceI RCATGY 1 cut(s) 230
XmnI GAANNNNTTC 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.