Rmu_sc0004494.1_g000006

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004494.1
OG0000119
Physical Location & Seq
Reverse (-)
36156 .. 36551
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004494.1_g000006.1.cds

Sequence Viewer

Length: 396 bp
atgtggatctactcgtcgaatactagtactccatccaagatccacaggacggttgagaacggtggcatttatggagatgaacaacttctgagttgggcgtcgaaggacatgcaacacgtctcgtttgaaaacttcccgatctcaaaagaaaatgtgaaatgtcatacaaaagtggaagggtttgctatcgcggccaaggacttgaaagatgtggccaccaagtgcaaaatgttttggaattacgatgatcctcgagaggagagggtggcgagctctaccataggaaggacattccgtcgaaaccgcaataacccaaataggccggctaccgtaggagtaggagctgcgacctcgtcaagaacaggaattgagtatcagcagatcgagagaacctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

131

Amino Acids

14.86

Weight (kDa)

9.2

Isoelectric Point (pI)

37.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 191
AciI CCGC 2 cut(s) 191, 304
AclWI GGATC 3 cut(s) 14, 34, 242
AcoI YGGCCR 2 cut(s) 192, 213
AcyI GRCGYC 1 cut(s) 98
AdeI CACNNNGTG 1 cut(s) 222
AfaI GTAC 1 cut(s) 28
AfiI CCNNNNNNNGG 2 cut(s) 49, 285
AflIII ACRYGT 1 cut(s) 115
AgsI TTSAA 2 cut(s) 128, 205
AhdI GACNNNNNGTC 1 cut(s) 294
AhlI ACTAGT 1 cut(s) 23
AjiI CACGTC 1 cut(s) 118
AluBI AGCT 2 cut(s) 273, 344
AluI AGCT 2 cut(s) 273, 344
Alw21I GWGCWC 1 cut(s) 275
Alw26I GTCTC 1 cut(s) 124
AlwI GGATC 3 cut(s) 14, 34, 242
Ama87I CYCGRG 1 cut(s) 252
AoxI GGCC 3 cut(s) 192, 213, 320
ApeKI GCWGC 1 cut(s) 344
Asp700I GAANNNNTTC 1 cut(s) 84
AvaI CYCGRG 1 cut(s) 252
BalI TGGCCA 1 cut(s) 215
BanII GRGCYC 1 cut(s) 275
Bbv12I GWGCWC 1 cut(s) 275
BbvI GCAGC 1 cut(s) 331
BccI CCATC 1 cut(s) 40
BcgI CGANNNNNNTGC 2 cut(s) 91, 125
BcoDI GTCTC 1 cut(s) 124
BcuI ACTAGT 1 cut(s) 23
BfaI CTAG 1 cut(s) 24
BisI GCNGC 2 cut(s) 192, 345
BlsI GCNGC 2 cut(s) 193, 346
BmcAI AGTACT 1 cut(s) 28
BmeRI GACNNNNNGTC 1 cut(s) 294
BmeT110I CYCGRG 1 cut(s) 252
BmgBI CACGTC 1 cut(s) 118
BsaHI GRCGYC 1 cut(s) 98
BsaJI CCNNGG 1 cut(s) 195
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 285
Bse118I RCCGGY 1 cut(s) 322
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 1 cut(s) 32
BseLI CCNNNNNNNGG 2 cut(s) 49, 285
BseMII CTCAG 1 cut(s) 80
BseRI GAGGAG 1 cut(s) 272
BseXI GCAGC 1 cut(s) 331
Bsh1236I CGCG 1 cut(s) 191
BshFI GGCC 3 cut(s) 194, 215, 322
BsiHKAI GWGCWC 1 cut(s) 275
BsiHKCI CYCGRG 1 cut(s) 252
BsiSI CCGG 1 cut(s) 323
BslI CCNNNNNNNGG 2 cut(s) 49, 285
BsmAI GTCTC 1 cut(s) 124
BsmBI CGTCTC 1 cut(s) 124
BsnI GGCC 3 cut(s) 194, 215, 322
BsoBI CYCGRG 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 275
Bsp143I GATC 5 cut(s) 6, 39, 138, 247, 381
BspACI CCGC 2 cut(s) 191, 304
BspANI GGCC 3 cut(s) 194, 215, 322
BspCNI CTCAG 1 cut(s) 81
BspFNI CGCG 1 cut(s) 191
BspPI GGATC 3 cut(s) 14, 34, 242
BsrFI RCCGGY 1 cut(s) 322
BssAI RCCGGY 1 cut(s) 322
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 5 cut(s) 6, 39, 138, 247, 381
BssNI GRCGYC 1 cut(s) 98
BssT1I CCWWGG 1 cut(s) 195
Bst4CI ACNGT 3 cut(s) 52, 62, 331
BstACI GRCGYC 1 cut(s) 98
BstC8I GCNNGC 2 cut(s) 271, 324
BstDEI CTNAG 1 cut(s) 89
BstF5I GGATG 1 cut(s) 32
BstFNI CGCG 1 cut(s) 191
BstKTI GATC 5 cut(s) 9, 42, 141, 250, 384
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 5 cut(s) 6, 39, 138, 247, 381
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNSI RCATGY 1 cut(s) 112
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 1 cut(s) 331
BstX2I RGATCY 2 cut(s) 6, 39
BstYI RGATCY 2 cut(s) 6, 39
BsuRI GGCC 3 cut(s) 194, 215, 322
BtrI CACGTC 1 cut(s) 118
BtsCI GGATG 1 cut(s) 32
Cac8I GCNNGC 2 cut(s) 271, 324
Cfr10I RCCGGY 1 cut(s) 322
CseI GACGC 1 cut(s) 87
Csp6I GTAC 1 cut(s) 27
CviAII CATG 1 cut(s) 109
CviJI RGCY 6 cut(s) 194, 215, 273, 322, 326, 344
CviKI_1 RGCY 6 cut(s) 194, 215, 273, 322, 326, 344
CviQI GTAC 1 cut(s) 27
DdeI CTNAG 1 cut(s) 89
DpnI GATC 5 cut(s) 8, 41, 140, 249, 383
DpnII GATC 5 cut(s) 6, 39, 138, 247, 381
DraIII CACNNNGTG 1 cut(s) 222
DriI GACNNNNNGTC 1 cut(s) 294
EaeI YGGCCR 2 cut(s) 192, 213
Eam1105I GACNNNNNGTC 1 cut(s) 294
Ecl136II GAGCTC 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 275
Eco53kI GAGCTC 1 cut(s) 273
Eco88I CYCGRG 1 cut(s) 252
EcoICRI GAGCTC 1 cut(s) 273
EcoT14I CCWWGG 1 cut(s) 195
EcoT38I GRGCYC 1 cut(s) 275
ErhI CCWWGG 1 cut(s) 195
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 1 cut(s) 112
FaiI YATR 4 cut(s) 72, 110, 165, 281
FatI CATG 1 cut(s) 108
Fnu4HI GCNGC 2 cut(s) 192, 345
FokI GGATG 1 cut(s) 19
FriOI GRGCYC 1 cut(s) 275
Fsp4HI GCNGC 2 cut(s) 192, 345
FspBI CTAG 1 cut(s) 24
GluI GCNGC 2 cut(s) 192, 345
HaeIII GGCC 3 cut(s) 194, 215, 322
HapII CCGG 1 cut(s) 323
HgaI GACGC 1 cut(s) 87
Hin1I GRCGYC 1 cut(s) 98
Hin1II CATG 1 cut(s) 112
HpaII CCGG 1 cut(s) 323
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 4 cut(s) 136, 254, 357, 385
Hpy99I CGWCG 3 cut(s) 19, 103, 300
HpyAV CCTTC 3 cut(s) 97, 170, 279
HpyCH4III ACNGT 3 cut(s) 52, 62, 331
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 2 cut(s) 112, 225
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 89
HpySE526I ACGT 1 cut(s) 117
Hsp92I GRCGYC 1 cut(s) 98
Hsp92II CATG 1 cut(s) 112
KroI GCCGGC 1 cut(s) 322
KroNI GCCGGC 1 cut(s) 324
Kzo9I GATC 5 cut(s) 6, 39, 138, 247, 381
LmnI GCTCC 1 cut(s) 341
LpnPI CCDG 3 cut(s) 31, 336, 348
Lsp1109I GCAGC 1 cut(s) 331
MaeI CTAG 1 cut(s) 24
MaeII ACGT 1 cut(s) 117
MalI GATC 5 cut(s) 8, 41, 140, 249, 383
MboI GATC 5 cut(s) 6, 39, 138, 247, 381
MflI RGATCY 2 cut(s) 6, 39
MhlI GDGCHC 1 cut(s) 275
MlsI TGGCCA 1 cut(s) 215
MluCI AATT 2 cut(s) 238, 366
MluNI TGGCCA 1 cut(s) 215
MnlI CCTC 4 cut(s) 250, 255, 261, 361
Mox20I TGGCCA 1 cut(s) 215
MroNI GCCGGC 1 cut(s) 322
MroXI GAANNNNTTC 1 cut(s) 84
MscI TGGCCA 1 cut(s) 215
Msp20I TGGCCA 1 cut(s) 215
MspI CCGG 1 cut(s) 323
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 191
NaeI GCCGGC 1 cut(s) 324
NdeII GATC 5 cut(s) 6, 39, 138, 247, 381
NgoMIV GCCGGC 1 cut(s) 322
NlaIII CATG 1 cut(s) 112
NspI RCATGY 1 cut(s) 112
PaeR7I CTCGAG 1 cut(s) 252
PdiI GCCGGC 1 cut(s) 324
PdmI GAANNNNTTC 1 cut(s) 84
PflFI GACNNNGTC 1 cut(s) 352
PkrI GCNGC 2 cut(s) 193, 346
Psp124BI GAGCTC 1 cut(s) 275
PsuI RGATCY 2 cut(s) 6, 39
PsyI GACNNNGTC 1 cut(s) 352
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
SacI GAGCTC 1 cut(s) 275
SatI GCNGC 2 cut(s) 192, 345
Sau3AI GATC 5 cut(s) 6, 39, 138, 247, 381
ScaI AGTACT 1 cut(s) 28
SduI GDGCHC 1 cut(s) 275
SetI ASST 5 cut(s) 120, 275, 346, 353, 395
Sfr274I CTCGAG 1 cut(s) 252
SlaI CTCGAG 1 cut(s) 252
SmlI CTYRAG 1 cut(s) 252
SmoI CTYRAG 1 cut(s) 252
SpeI ACTAGT 1 cut(s) 23
Sse9I AATT 2 cut(s) 238, 366
SsiI CCGC 2 cut(s) 191, 304
SspMI CTAG 1 cut(s) 24
SstI GAGCTC 1 cut(s) 275
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 3 cut(s) 52, 62, 331
TaiI ACGT 1 cut(s) 120
TaqI TCGA 5 cut(s) 17, 101, 253, 298, 384
TasI AATT 2 cut(s) 238, 366
TatI WGTACW 1 cut(s) 26
TauI GCSGC 1 cut(s) 194
TseI GCWGC 1 cut(s) 344
TspDTI ATGAA 1 cut(s) 93
TspGWI ACGGA 1 cut(s) 284
Tth111I GACNNNGTC 1 cut(s) 352
XceI RCATGY 1 cut(s) 112
XhoI CTCGAG 1 cut(s) 252
XmnI GAANNNNTTC 1 cut(s) 84
XspI CTAG 1 cut(s) 24
ZrmI AGTACT 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.