Rh1CG423600

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000119
Physical Location & Seq
Reverse (-)
68279836 .. 68284327
4492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG423600.1

Sequence Viewer

Length: 1569 bp
ATGGCATGTGTGATTGCAGTCTTAATGGATCCGCTCTTCTTCTACATTCCATACATCGACGACGATAAGAAGTGCCTTGGAATGGACAAAGAGTTGAGAAATGCAGCTCTTATTTCTCGATCACTCACAGATATCACTTTCATAGTGCATATTATCCATCAAATTCATACTGCTATGAAAACTGGGGCGGCCAAATCCGACCGGATCGATGGCAAGCGCTCTGTTTGGGAATGGGACGACTTTAATCCAATCAGAGTAGTTATTAAGAACTTGTCGTGGGGCTCTTTCCTAACCGATATTCTTGCTCTTCTTCCAATTCCACAAGTGTTAATAGTAGCTGTTTTTTTCAAGATGAGAGGCCCTAGATATTTGGATGATAGAAAGGCTGTGAGTTTCTTTATTCTTGCCCAATATCTTCCAAGGATGTATCGAATTTACCTATCATCCAAAAAGCTTAGAAAGAGTACTGCTATTTGGCTTAAAGGTGCATTCAATCTTTTCATGTACATCATTGCCAGTCATATACTTGGAGCATTTTGGTACTTCTTCTCCATTCAACGAGTAACCTCATGTTGGCATCAGACCTACTGCAAAACTACTCAAGGATGTACAACTACTTATTATTGTGATGATACTGCTTTAATCAATATCCCATTAGTCAATGGATCGTGTCCCGTTAGTCCAACAGATACGGAGAAATTTGATTTCGGAATGTTTAGTGATTGCCTTCAGTCTGGTAACACGGGACCAACAAGTTTCTCAGTAAAATTGCTTTACACTTTATGGTGGGGTCTTCGAAATTTAAGCAATTTTGGCACGAGTCTGGAAACAAGTACCTACGTGTGGGAAAATTTCTTTGCAATTCTTATATCCGTTGTTGGGTTGATACTGTTTTCTTATCTCATTGGAAATATGCAGCAATGTATGCAGTGGGAGGAGGAAAAGAAAATGGGAAGCGACAAGTTCAAATTGATAAGGCAAGATATAGAAAATTGGATGGAGATAAATGAACTCGAAGATGACCTCAAAAAAGAAATCATGAAAACAGTAAAGAAAAAGTTGGAAGATGATGTAGATTTTGAAGCTGCAAATCTGGAGACTATCTTTTATATTCTTCCCTGGTATACCCAACAAACTCTACAGCGTGTTCTCTGCATGAATACGCTAAGAAAGGTAAAAATGTTTGAAACTCTGGATGAAAAAGAGTTGCAAATGATATGCGACTATTTGAAGCCAGTGACCTACGCAGAGAATACCGTCGTTTTTCGAATGGGAGAACCACTTGATCGCATGGTCTTCATTACAGGGGGCTGCATGTGGTCCTATACGACCGCGTCTGGGAGTAGTGCATCGATGGACACCAACTTCCTAAAGAAAGGTGATTTTTATGGAAGAGAGCTTCTGCAGTTTGTATCATCATCTCTTGCGGCACTTCCTACCTCGGCTGCAAATGTCAAGTGTCACACAAATGTAGATGCCTTTGTTCTCATGGCCAAGGACTTGAGAAGCATGGTAGAAAAAAAATTGTTGAAATCCAACTACAATGATTCTCATGATGATGCCGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

522

Amino Acids

60.15

Weight (kDa)

6.42

Isoelectric Point (pI)

35.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 32 - 309 1.9e-09 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 34
AccI GTMKAC 1 cut(s) 1124
AccII CGCG 1 cut(s) 1334
AciI CCGC 4 cut(s) 32, 188, 1332, 1427
AclWI GGATC 4 cut(s) 23, 36, 212, 673
AcoI YGGCCR 2 cut(s) 189, 1491
AcsI RAATTY 5 cut(s) 162, 432, 698, 799, 850
AcuI CTGAAG 1 cut(s) 713
AfaI GTAC 5 cut(s) 466, 506, 542, 610, 835
AfeI AGCGCT 1 cut(s) 218
AfiI CCNNNNNNNGG 5 cut(s) 82, 573, 843, 879, 1338
AflIII ACRYGT 1 cut(s) 840
AgsI TTSAA 8 cut(s) 349, 493, 557, 967, 1082, 1187, 1231, 1531
AjnI CCWGG 1 cut(s) 1118
AluBI AGCT 5 cut(s) 107, 338, 454, 1085, 1399
AluI AGCT 5 cut(s) 107, 338, 454, 1085, 1399
Alw26I GTCTC 1 cut(s) 1091
AlwI GGATC 4 cut(s) 23, 36, 212, 673
Aor51HI AGCGCT 1 cut(s) 218
AoxI GGCC 3 cut(s) 189, 358, 1491
ApeKI GCWGC 5 cut(s) 104, 916, 1085, 1311, 1445
ApoI RAATTY 5 cut(s) 162, 432, 698, 799, 850
AspLEI GCGC 1 cut(s) 219
AspS9I GGNCC 3 cut(s) 359, 746, 1320
AsuHPI GGTGA 1 cut(s) 1391
AsuII TTCGAA 2 cut(s) 796, 1267
AvaII GGWCC 2 cut(s) 746, 1320
BalI TGGCCA 1 cut(s) 1493
BamHI GGATCC 1 cut(s) 28
BanII GRGCYC 1 cut(s) 284
BauI CACGAG 1 cut(s) 817
BbsI GAAGAC 2 cut(s) 785, 1288
BbvI GCAGC 5 cut(s) 116, 928, 1072, 1298, 1432
BccI CCATC 4 cut(s) 165, 203, 991, 1348
BcgI CGANNNNNNTGC 2 cut(s) 284, 318
BciT130I CCWGG 1 cut(s) 1120
BcoDI GTCTC 1 cut(s) 1091
BfaI CTAG 2 cut(s) 363, 1567
BfmI CTRYAG 2 cut(s) 1139, 1403
BfoI RGCGCY 1 cut(s) 220
BisI GCNGC 7 cut(s) 105, 189, 917, 1086, 1312, 1428, 1446
BlsI GCNGC 7 cut(s) 106, 190, 918, 1087, 1313, 1429, 1447
BmcAI AGTACT 1 cut(s) 466
Bme1390I CCNGG 1 cut(s) 1120
Bme18I GGWCC 2 cut(s) 746, 1320
BmgT120I GGNCC 3 cut(s) 359, 746, 1320
BmiI GGNNCC 2 cut(s) 30, 747
BmrFI CCNGG 1 cut(s) 1120
BmrI ACTGGG 1 cut(s) 192
BmsI GCATC 4 cut(s) 586, 1358, 1465, 1549
BmuI ACTGGG 1 cut(s) 192
BpiI GAAGAC 2 cut(s) 785, 1288
BpmI CTGGAG 1 cut(s) 1115
Bpu14I TTCGAA 2 cut(s) 796, 1267
BpuEI CTTGAG 2 cut(s) 585, 1522
Bsa29I ATCGAT 2 cut(s) 207, 1352
BsaAI YACGTR 1 cut(s) 841
BsaJI CCNNGG 5 cut(s) 76, 419, 1118, 1440, 1494
BsaWI WCCGGW 1 cut(s) 201
BsaXI ACNNNNNCTCC 2 cut(s) 533, 563
Bsc4I CCNNNNNNNGG 5 cut(s) 82, 573, 843, 879, 1338
Bse1I ACTGG 3 cut(s) 187, 516, 1235
Bse3DI GCAATG 2 cut(s) 510, 926
BseBI CCWGG 1 cut(s) 1120
BseCI ATCGAT 2 cut(s) 207, 1352
BseDI CCNNGG 5 cut(s) 76, 419, 1118, 1440, 1494
BseGI GGATG 6 cut(s) 379, 429, 443, 611, 1002, 1201
BseLI CCNNNNNNNGG 5 cut(s) 82, 573, 843, 879, 1338
BseMI GCAATG 2 cut(s) 510, 926
BseMII CTCAG 1 cut(s) 774
BseNI ACTGG 3 cut(s) 187, 516, 1235
BseRI GAGGAG 1 cut(s) 950
BseXI GCAGC 5 cut(s) 116, 928, 1072, 1298, 1432
Bsh1236I CGCG 1 cut(s) 1334
Bsh1285I CGRYCG 2 cut(s) 202, 1332
BshFI GGCC 3 cut(s) 191, 360, 1493
BshVI ATCGAT 2 cut(s) 207, 1352
BsiEI CGRYCG 2 cut(s) 202, 1332
BsiSI CCGG 1 cut(s) 202
BslFI GGGAC 3 cut(s) 248, 657, 759
BslI CCNNNNNNNGG 5 cut(s) 82, 573, 843, 879, 1338
BsmAI GTCTC 1 cut(s) 1091
BsmFI GGGAC 3 cut(s) 248, 657, 759
BsmI GAATGC 1 cut(s) 488
BsnI GGCC 3 cut(s) 191, 360, 1493
Bsp119I TTCGAA 2 cut(s) 796, 1267
Bsp1286I GDGCHC 1 cut(s) 284
Bsp1407I TGTACA 2 cut(s) 504, 608
Bsp143I GATC 5 cut(s) 28, 119, 204, 665, 1285
BspACI CCGC 4 cut(s) 32, 188, 1332, 1427
BspANI GGCC 3 cut(s) 191, 360, 1493
BspCNI CTCAG 1 cut(s) 773
BspDI ATCGAT 2 cut(s) 207, 1352
BspFNI CGCG 1 cut(s) 1334
BspHI TCATGA 2 cut(s) 1038, 1552
BspLI GGNNCC 2 cut(s) 30, 747
BspMAI CTGCAG 1 cut(s) 1407
BspPI GGATC 4 cut(s) 23, 36, 212, 673
BspQI GCTCTTC 2 cut(s) 41, 312
BspT104I TTCGAA 2 cut(s) 796, 1267
BsrBI CCGCTC 1 cut(s) 34
BsrDI GCAATG 2 cut(s) 510, 926
BsrGI TGTACA 2 cut(s) 504, 608
BsrI ACTGG 3 cut(s) 187, 516, 1235
BssECI CCNNGG 5 cut(s) 76, 419, 1118, 1440, 1494
BssMI GATC 5 cut(s) 28, 119, 204, 665, 1285
BssNAI GTATAC 1 cut(s) 1125
BssSI CACGAG 1 cut(s) 817
BssT1I CCWWGG 3 cut(s) 76, 419, 1494
Bst1107I GTATAC 1 cut(s) 1125
Bst2BI CACGAG 1 cut(s) 817
Bst2UI CCWGG 1 cut(s) 1120
Bst4CI ACNGT 3 cut(s) 891, 1048, 1258
Bst6I CTCTTC 3 cut(s) 41, 312, 1387
BstAPI GCANNNNNTGC 1 cut(s) 925
BstAUI TGTACA 2 cut(s) 504, 608
BstBAI YACGTR 1 cut(s) 841
BstBI TTCGAA 2 cut(s) 796, 1267
BstC8I GCNNGC 1 cut(s) 215
BstDEI CTNAG 3 cut(s) 455, 760, 1166
BstF5I GGATG 6 cut(s) 379, 429, 443, 611, 1002, 1201
BstFNI CGCG 1 cut(s) 1334
BstH2I RGCGCY 1 cut(s) 220
BstHHI GCGC 1 cut(s) 219
BstKTI GATC 5 cut(s) 31, 122, 207, 668, 1288
BstMAI GTCTC 1 cut(s) 1091
BstMBI GATC 5 cut(s) 28, 119, 204, 665, 1285
BstMCI CGRYCG 2 cut(s) 202, 1332
BstMWI GCNNNNNNNGC 2 cut(s) 813, 925
BstNI CCWGG 1 cut(s) 1120
BstNSI RCATGY 2 cut(s) 9, 1318
BstSCI CCNGG 1 cut(s) 1118
BstSFI CTRYAG 2 cut(s) 1139, 1403
BstUI CGCG 1 cut(s) 1334
BstV1I GCAGC 5 cut(s) 116, 928, 1072, 1298, 1432
BstV2I GAAGAC 2 cut(s) 785, 1288
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BstZ17I GTATAC 1 cut(s) 1125
Bsu15I ATCGAT 2 cut(s) 207, 1352
BsuRI GGCC 3 cut(s) 191, 360, 1493
BsuTUI ATCGAT 2 cut(s) 207, 1352
BtsCI GGATG 6 cut(s) 379, 429, 443, 611, 1002, 1201
BtsI GCAGTG 1 cut(s) 935
BtsIMutI CAGTG 2 cut(s) 935, 1242
Cac8I GCNNGC 1 cut(s) 215
CciI TCATGA 2 cut(s) 1038, 1552
CfoI GCGC 1 cut(s) 219
Cfr13I GGNCC 3 cut(s) 359, 746, 1320
ClaI ATCGAT 2 cut(s) 207, 1352
CseI GACGC 1 cut(s) 1323
Csp6I GTAC 5 cut(s) 465, 505, 541, 609, 834
CviQI GTAC 5 cut(s) 465, 505, 541, 609, 834
DdeI CTNAG 3 cut(s) 455, 760, 1166
DpnI GATC 5 cut(s) 30, 121, 206, 667, 1287
DpnII GATC 5 cut(s) 28, 119, 204, 665, 1285
EaeI YGGCCR 2 cut(s) 189, 1491
Eam1104I CTCTTC 3 cut(s) 41, 312, 1387
EarI CTCTTC 3 cut(s) 41, 312, 1387
Eco130I CCWWGG 3 cut(s) 76, 419, 1494
Eco24I GRGCYC 1 cut(s) 284
Eco32I GATATC 1 cut(s) 133
Eco47I GGWCC 2 cut(s) 746, 1320
Eco47III AGCGCT 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 713
EcoO109I RGGNCCY 1 cut(s) 359
EcoRII CCWGG 1 cut(s) 1118
EcoRV GATATC 1 cut(s) 133
EcoT14I CCWWGG 3 cut(s) 76, 419, 1494
EcoT38I GRGCYC 1 cut(s) 284
ErhI CCWWGG 3 cut(s) 76, 419, 1494
FaqI GGGAC 3 cut(s) 248, 657, 759
FblI GTMKAC 1 cut(s) 1124
Fnu4HI GCNGC 7 cut(s) 105, 189, 917, 1086, 1312, 1428, 1446
FokI GGATG 6 cut(s) 386, 430, 436, 618, 1009, 1208
FriOI GRGCYC 1 cut(s) 284
Fsp4HI GCNGC 7 cut(s) 105, 189, 917, 1086, 1312, 1428, 1446
FspBI CTAG 2 cut(s) 363, 1567
GlaI GCGC 1 cut(s) 218
GluI GCNGC 7 cut(s) 105, 189, 917, 1086, 1312, 1428, 1446
GsuI CTGGAG 1 cut(s) 1115
HaeII RGCGCY 1 cut(s) 220
HaeIII GGCC 3 cut(s) 191, 360, 1493
HapII CCGG 1 cut(s) 202
HgaI GACGC 1 cut(s) 1323
HhaI GCGC 1 cut(s) 219
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HindIII AAGCTT 1 cut(s) 452
HinfI GANTC 2 cut(s) 820, 1547
HpaII CCGG 1 cut(s) 202
HphI GGTGA 1 cut(s) 1391
Hpy166II GTNNAC 1 cut(s) 1125
Hpy188I TCNGA 4 cut(s) 199, 254, 582, 710
Hpy188III TCNNGA 7 cut(s) 117, 349, 824, 1039, 1094, 1193, 1553
Hpy8I GTNNAC 1 cut(s) 1125
Hpy99I CGWCG 3 cut(s) 62, 65, 1262
HpyAV CCTTC 1 cut(s) 737
HpyCH4III ACNGT 3 cut(s) 891, 1048, 1258
HpyCH4IV ACGT 1 cut(s) 840
HpyF10VI GCNNNNNNNGC 2 cut(s) 813, 925
HpyF3I CTNAG 3 cut(s) 455, 760, 1166
HpySE526I ACGT 1 cut(s) 840
HspAI GCGC 1 cut(s) 217
Kzo9I GATC 5 cut(s) 28, 119, 204, 665, 1285
LguI GCTCTTC 2 cut(s) 41, 312
LmnI GCTCC 1 cut(s) 530
Lsp1109I GCAGC 5 cut(s) 116, 928, 1072, 1298, 1432
LweI GCATC 4 cut(s) 586, 1358, 1465, 1549
MaeI CTAG 2 cut(s) 363, 1567
MaeII ACGT 1 cut(s) 840
MaeIII GTNAC 4 cut(s) 562, 737, 1237, 1460
MalI GATC 5 cut(s) 30, 121, 206, 667, 1287
MbiI CCGCTC 1 cut(s) 34
MboI GATC 5 cut(s) 28, 119, 204, 665, 1285
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 284
MlsI TGGCCA 1 cut(s) 1493
MluNI TGGCCA 1 cut(s) 1493
MlyI GAGTC 1 cut(s) 829
MmeI TCCRAC 4 cut(s) 222, 707, 1041, 1560
MnlI CCTC 6 cut(s) 350, 577, 928, 931, 1034, 1450
Mox20I TGGCCA 1 cut(s) 1493
MscI TGGCCA 1 cut(s) 1493
MseI TTAA 7 cut(s) 23, 243, 264, 329, 480, 641, 803
MslI CAYNNNNRTG 2 cut(s) 1467, 1557
Msp20I TGGCCA 1 cut(s) 1493
MspI CCGG 1 cut(s) 202
MspR9I CCNGG 1 cut(s) 1120
Mva1269I GAATGC 1 cut(s) 488
MvaI CCWGG 1 cut(s) 1120
MvnI CGCG 1 cut(s) 1334
MwoI GCNNNNNNNGC 2 cut(s) 813, 925
NdeII GATC 5 cut(s) 28, 119, 204, 665, 1285
NlaIV GGNNCC 2 cut(s) 30, 747
NmeAIII GCCGAG 1 cut(s) 1421
NmuCI GTSAC 2 cut(s) 1237, 1460
NspI RCATGY 2 cut(s) 9, 1318
NspV TTCGAA 2 cut(s) 796, 1267
PagI TCATGA 2 cut(s) 1038, 1552
PciSI GCTCTTC 2 cut(s) 41, 312
PctI GAATGC 1 cut(s) 488
PfeI GAWTC 1 cut(s) 1547
PflFI GACNNNGTC 1 cut(s) 1333
PkrI GCNGC 7 cut(s) 106, 190, 918, 1087, 1313, 1429, 1447
PleI GAGTC 1 cut(s) 828
PpsI GAGTC 1 cut(s) 828
Ppu21I YACGTR 1 cut(s) 841
Psp6I CCWGG 1 cut(s) 1118
PspGI CCWGG 1 cut(s) 1118
PspN4I GGNNCC 2 cut(s) 30, 747
PspPI GGNCC 3 cut(s) 359, 746, 1320
PstI CTGCAG 1 cut(s) 1407
PsuI RGATCY 1 cut(s) 28
PsyI GACNNNGTC 1 cut(s) 1333
RsaI GTAC 5 cut(s) 466, 506, 542, 610, 835
RsaNI GTAC 5 cut(s) 465, 505, 541, 609, 834
RseI CAYNNNNRTG 2 cut(s) 1467, 1557
SapI GCTCTTC 2 cut(s) 41, 312
SaqAI TTAA 7 cut(s) 23, 243, 264, 329, 480, 641, 803
SatI GCNGC 7 cut(s) 105, 189, 917, 1086, 1312, 1428, 1446
Sau3AI GATC 5 cut(s) 28, 119, 204, 665, 1285
Sau96I GGNCC 3 cut(s) 359, 746, 1320
ScaI AGTACT 1 cut(s) 466
SchI GAGTC 1 cut(s) 829
ScrFI CCNGG 1 cut(s) 1120
SduI GDGCHC 1 cut(s) 284
SfaNI GCATC 4 cut(s) 586, 1358, 1465, 1549
SfcI CTRYAG 2 cut(s) 1139, 1403
SfuI TTCGAA 2 cut(s) 796, 1267
SinI GGWCC 2 cut(s) 746, 1320
SmiMI CAYNNNNRTG 2 cut(s) 1467, 1557
SmlI CTYRAG 2 cut(s) 600, 1501
SmoI CTYRAG 2 cut(s) 600, 1501
SsiI CCGC 4 cut(s) 32, 188, 1332, 1427
SspMI CTAG 2 cut(s) 363, 1567
StyD4I CCNGG 1 cut(s) 1118
StyI CCWWGG 3 cut(s) 76, 419, 1494
TaaI ACNGT 3 cut(s) 891, 1048, 1258
TaiI ACGT 1 cut(s) 843
TaqI TCGA 8 cut(s) 57, 118, 207, 430, 796, 1014, 1267, 1352
TatI WGTACW 3 cut(s) 464, 504, 608
TauI GCSGC 2 cut(s) 191, 1430
TfiI GAWTC 1 cut(s) 1547
Tru1I TTAA 7 cut(s) 23, 243, 264, 329, 480, 641, 803
Tru9I TTAA 7 cut(s) 23, 243, 264, 329, 480, 641, 803
TscAI CASTG 2 cut(s) 935, 1242
TseFI GTSAC 2 cut(s) 1237, 1460
TseI GCWGC 5 cut(s) 104, 916, 1085, 1311, 1445
Tsp45I GTSAC 2 cut(s) 1237, 1460
TspDTI ATGAA 9 cut(s) 130, 155, 191, 490, 1023, 1055, 1172, 1212, 1288
TspGWI ACGGA 2 cut(s) 707, 862
TspRI CASTG 2 cut(s) 935, 1242
Tth111I GACNNNGTC 1 cut(s) 1333
VpaK11BI GGWCC 2 cut(s) 746, 1320
XapI RAATTY 5 cut(s) 162, 432, 698, 799, 850
XceI RCATGY 2 cut(s) 9, 1318
XmiI GTMKAC 1 cut(s) 1124
XspI CTAG 2 cut(s) 363, 1567
ZrmI AGTACT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.