Rh4AG156400

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000119
Physical Location & Seq
Forward (+)
39797903 .. 39812695
14793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG156400.1

Sequence Viewer

Length: 2046 bp
ATGAAGGAGAATATGCAAGATCCTGCCCAACATAGCCATACACAAGGTGACGCTGTAAATCCAAGCGGTGGTAAGGATCAAGCAATTAATGCAAGAATAACAGCCATATGGAAAGCATTAGTCATGCAGATTTCCTTAGGGTCAGAACATATCCTTGAACATCGTTTACAAACGAACGTACAAGGAACCTGGAATACCATACTCGTATTCTCATGTGTGATTGCAGTCTCAGTTGATCCTTTGTTCTTTTACCTTCCGATCATTAATGAGGAAATCAAGTGCGTTGGAGTGGACAAAAATTTAAGGACTGCTGCTCTTCTTTTGCGCGCTGTCACTGATATTGCTTTCATCATGAACATTTTCTATGAAATTAAAAATGTCATCGAAAATCTACAATCTAGAGCAAAGTCGATGAAAAGTAAAGGAAAGCAGCTAATTCCCAGAAGTTGGTTCCTTAAGGAATTAGCTCGAAAGATGCCATGGCACTCGATTACAATTGATATTCTTGCGGTTCTCCCTATCCCACAAGTGCTAGTGACTGTTTTCTTCAAAATGAGAAGCTCCAAATATCTTGGCCGAAGAAAGATTATTGTTGTCTTTCTTCTTGCCCAATATTTACCAAGAATTTATCGTATGCACCATTCTTCACAGAAATTCAAGCAAAGTAAGGGAGTATGGATCCAAGGTGTATTCTATTTTTTCTTGTATATCCTCGCCAGTCATGTGCTGGGAGGTTTTTGGTATTTTTTCTCTATTCAACGAGAGACAGCATGTTGGTACCAAGCTTGTATGAAGCATAGTACAAGTGAATGCAATTTTTATTGCAATCAAGACATTTCCTCTAGAAATATGACATTCATTAGTTCTCTAGATGAATTTTGCCTTGTTGATGTTCCGGCAAATGCGACCGCACCATTTCATTTTGGAATATTTCTTGATTCCCTTAAAAGTGGTAACACAGGGCAAATAAATTTCGCAAAGAAGATCTCTTACTCATTTTGGTGGGGACTACGAAATCTTAGTAACTTTGGGACGAACTTGGAAACAAGTACGTATGTGTGGGAAAACTGCTTTGCGATCCTTACATCTACTGTTGGCTTGCTTCTTTTCTTATATCTCATTGGCAAAGTACAGACATTTATCTCAATGCAAACTGAAAAATCAGAGGAGAGAAGAAAAAAGCTTAGCTCGACATTGATTGGTGTACAACTCTGGATGAATAAAAATGATCTGAATACAGAGATAAAGAACGAAATCACCGAAAATGTAAAAAAAAAAAGGGAGAAAATCAAAGATGCTGATGTGGAAAACATATTATCTATTCTCCCTTTGCAAAACCGAACATCTCTAAAGCGATTTCTCTGCATGGAAATACTGAGGAAGCAGTTGAATATGCCAGGATCGGTCCTTAAGGGAGTTAAGGATATCGAAAAGAAACCAGGCCAAGAGAATAAAGATACCATACAAGAAAAAATGTTGACAAGCATTTGTGACTTTCTGAAGCCGGTGATCTACCCAGATGGTAGATATGTTTACCGAATAGGAGAACCACTTGATCGCATGCTCTTAATTAGAGACGGTTTAATATGGACATATAACACCACCAGTATCAGTAGGATGAGTCCCAGTAGTGCTAGTACAAGTCAAGATGAAGGCCAAAGAACAGGTTCAACTTGCCTTGGGAAAGGTGCTTTTTACGGCGATGAACTTCTGAGTTGGGCATCTGATAGTCTTAAATCTTTGGACAACCTTCCTGTGTTGAAAGCAAATGCCAAAGCTCATGGAAAAGTAGAAGGATTTGTTCTTATGGCCAAGGACTTGAAGGTTGTAGTCGACAAATACAAAATGTATTGGGGTTTCCCCGATTCTGATGTAAAAGAGGAGGCAGCACTTGAAACCATAAACAAATTCTGTCAAGTATTGAAGGATAAGAAAGGTCGACAAAAGGTCCAACCGGAGCATCCAAAAGTACTTGATGTTCAACCAACATCAGCAGCCATGAACCCTCCACCGAAGGACGAAGTAGTACTTAAGGTTCGAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

681

Amino Acids

77.69

Weight (kDa)

9.35

Isoelectric Point (pI)

41.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 777
AccB1I GGYRCC 1 cut(s) 777
AccB7I CCANNNNNTGG 2 cut(s) 68, 447
AccI GTMKAC 2 cut(s) 1833, 1939
AccII CGCG 1 cut(s) 327
AciI CCGC 3 cut(s) 66, 509, 909
AclWI GGATC 7 cut(s) 14, 84, 230, 673, 686, 1072, 1408
AcoI YGGCCR 2 cut(s) 574, 1809
AcsI RAATTY 6 cut(s) 298, 624, 653, 875, 970, 1907
AcuI CTGAAG 1 cut(s) 1520
AdeI CACNNNGTG 1 cut(s) 47
AfaI GTAC 9 cut(s) 180, 779, 802, 1051, 1131, 1206, 1639, 1971, 2028
AfiI CCNNNNNNNGG 2 cut(s) 68, 447
AflII CTTAAG 3 cut(s) 455, 1409, 2030
AhdI GACNNNNNGTC 1 cut(s) 1946
AjnI CCWGG 3 cut(s) 188, 1396, 1438
AluBI AGCT 7 cut(s) 433, 467, 561, 785, 1183, 1188, 1778
AluI AGCT 7 cut(s) 433, 467, 561, 785, 1183, 1188, 1778
Alw26I GTCTC 3 cut(s) 232, 758, 1569
AlwI GGATC 7 cut(s) 14, 84, 230, 673, 686, 1072, 1408
AoxI GGCC 4 cut(s) 574, 1441, 1654, 1809
ApeKI GCWGC 4 cut(s) 311, 430, 1886, 1994
ApoI RAATTY 6 cut(s) 298, 624, 653, 875, 970, 1907
AseI ATTAAT 2 cut(s) 87, 264
Asp700I GAANNNNTTC 2 cut(s) 359, 1666
Asp718I GGTACC 1 cut(s) 777
AspLEI GCGC 2 cut(s) 327, 329
AspS9I GGNCC 2 cut(s) 1405, 1948
AsuHPI GGTGA 3 cut(s) 59, 1249, 1519
AvaII GGWCC 2 cut(s) 1405, 1948
AxyI CCTNAGG 1 cut(s) 136
BalI TGGCCA 1 cut(s) 1811
BamHI GGATCC 1 cut(s) 678
BanI GGYRCC 1 cut(s) 777
BarI GAAGNNNNNNTAC 2 cut(s) 974, 1006
BbvI GCAGC 4 cut(s) 298, 442, 1898, 2006
BccI CCATC 1 cut(s) 1514
BceAI ACGGC 1 cut(s) 1714
BcgI CGANNNNNNTGC 2 cut(s) 1344, 1378
BciT130I CCWGG 3 cut(s) 190, 1398, 1440
BcoDI GTCTC 3 cut(s) 232, 758, 1569
BfaI CTAG 5 cut(s) 399, 533, 843, 869, 1635
BfrI CTTAAG 3 cut(s) 455, 1409, 2030
BglII AGATCT 1 cut(s) 984
BisI GCNGC 4 cut(s) 312, 431, 1887, 1995
BlpI GCTNAGC 1 cut(s) 1184
BlsI GCNGC 4 cut(s) 313, 432, 1888, 1996
BmcAI AGTACT 2 cut(s) 1971, 2028
Bme1390I CCNGG 3 cut(s) 190, 1398, 1440
Bme18I GGWCC 2 cut(s) 1405, 1948
BmeRI GACNNNNNGTC 1 cut(s) 1946
BmgT120I GGNCC 2 cut(s) 1405, 1948
BmiI GGNNCC 4 cut(s) 187, 452, 680, 779
BmrFI CCNGG 3 cut(s) 190, 1398, 1440
BmrI ACTGGG 1 cut(s) 1620
BmsI GCATC 4 cut(s) 465, 1285, 1730, 1969
BmuI ACTGGG 1 cut(s) 1620
Bpu1102I GCTNAGC 1 cut(s) 1184
BsaAI YACGTR 1 cut(s) 1053
BsaJI CCNNGG 4 cut(s) 479, 682, 1678, 1812
BsaWI WCCGGW 1 cut(s) 1954
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 447
Bse118I RCCGGY 1 cut(s) 1504
Bse1I ACTGG 3 cut(s) 717, 1605, 1626
Bse21I CCTNAGG 1 cut(s) 136
BseBI CCWGG 3 cut(s) 190, 1398, 1440
BseDI CCNNGG 4 cut(s) 479, 682, 1678, 1812
BseGI GGATG 3 cut(s) 1221, 1623, 1960
BseLI CCNNNNNNNGG 2 cut(s) 68, 447
BseMII CTCAG 3 cut(s) 243, 1367, 1703
BseNI ACTGG 3 cut(s) 717, 1605, 1626
BsePI GCGCGC 1 cut(s) 325
BseRI GAGGAG 2 cut(s) 1181, 1895
BseXI GCAGC 4 cut(s) 298, 442, 1898, 2006
BseYI CCCAGC 1 cut(s) 727
Bsh1236I CGCG 1 cut(s) 327
Bsh1285I CGRYCG 1 cut(s) 909
BshFI GGCC 4 cut(s) 576, 1443, 1656, 1811
BshNI GGYRCC 1 cut(s) 777
BsiEI CGRYCG 1 cut(s) 909
BsiSI CCGG 3 cut(s) 896, 1505, 1955
BslFI GGGAC 3 cut(s) 1020, 1045, 1608
BslI CCNNNNNNNGG 2 cut(s) 68, 447
BsmAI GTCTC 3 cut(s) 232, 758, 1569
BsmBI CGTCTC 1 cut(s) 1569
BsmFI GGGAC 3 cut(s) 1020, 1045, 1608
BsmI GAATGC 1 cut(s) 815
BsnI GGCC 4 cut(s) 576, 1443, 1656, 1811
Bsp1407I TGTACA 1 cut(s) 1204
Bsp1720I GCTNAGC 1 cut(s) 1184
Bsp19I CCATGG 1 cut(s) 479
BspACI CCGC 3 cut(s) 66, 509, 909
BspANI GGCC 4 cut(s) 576, 1443, 1656, 1811
BspCNI CTCAG 3 cut(s) 242, 1368, 1704
BspFNI CGCG 1 cut(s) 327
BspHI TCATGA 1 cut(s) 351
BspLI GGNNCC 4 cut(s) 187, 452, 680, 779
BspPI GGATC 7 cut(s) 14, 84, 230, 673, 686, 1072, 1408
BspQI GCTCTTC 1 cut(s) 321
BspT107I GGYRCC 1 cut(s) 777
BspTI CTTAAG 3 cut(s) 455, 1409, 2030
BsrFI RCCGGY 1 cut(s) 1504
BsrGI TGTACA 1 cut(s) 1204
BsrI ACTGG 3 cut(s) 717, 1605, 1626
BssAI RCCGGY 1 cut(s) 1504
BssECI CCNNGG 4 cut(s) 479, 682, 1678, 1812
BssHII GCGCGC 1 cut(s) 325
BssT1I CCWWGG 4 cut(s) 479, 682, 1678, 1812
Bst2UI CCWGG 3 cut(s) 190, 1398, 1440
Bst4CI ACNGT 3 cut(s) 541, 1093, 1580
Bst6I CTCTTC 1 cut(s) 321
BstAFI CTTAAG 3 cut(s) 455, 1409, 2030
BstAPI GCANNNNNTGC 1 cut(s) 89
BstAUI TGTACA 1 cut(s) 1204
BstBAI YACGTR 1 cut(s) 1053
BstC8I GCNNGC 3 cut(s) 327, 1100, 1562
BstDEI CTNAG 6 cut(s) 136, 229, 1019, 1184, 1376, 1712
BstDSI CCRYGG 1 cut(s) 479
BstF5I GGATG 3 cut(s) 1221, 1623, 1960
BstFNI CGCG 1 cut(s) 327
BstHHI GCGC 2 cut(s) 327, 329
BstMAI GTCTC 3 cut(s) 232, 758, 1569
BstMCI CGRYCG 1 cut(s) 909
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstNI CCWGG 3 cut(s) 190, 1398, 1440
BstNSI RCATGY 2 cut(s) 774, 1564
BstSCI CCNGG 3 cut(s) 188, 1396, 1438
BstSNI TACGTA 1 cut(s) 1053
BstUI CGCG 1 cut(s) 327
BstV1I GCAGC 4 cut(s) 298, 442, 1898, 2006
BstX2I RGATCY 3 cut(s) 19, 678, 984
BstYI RGATCY 3 cut(s) 19, 678, 984
Bsu36I CCTNAGG 1 cut(s) 136
BsuRI GGCC 4 cut(s) 576, 1443, 1656, 1811
BtgI CCRYGG 1 cut(s) 479
BtgZI GCGATG 1 cut(s) 1716
BtsCI GGATG 3 cut(s) 1221, 1623, 1960
BtsIMutI CAGTG 1 cut(s) 333
Cac8I GCNNGC 3 cut(s) 327, 1100, 1562
CciI TCATGA 1 cut(s) 351
CfoI GCGC 2 cut(s) 327, 329
Cfr10I RCCGGY 1 cut(s) 1504
Cfr13I GGNCC 2 cut(s) 1405, 1948
CseI GACGC 1 cut(s) 59
Csp6I GTAC 9 cut(s) 179, 778, 801, 1050, 1130, 1205, 1638, 1970, 2027
CviQI GTAC 9 cut(s) 179, 778, 801, 1050, 1130, 1205, 1638, 1970, 2027
DdeI CTNAG 6 cut(s) 136, 229, 1019, 1184, 1376, 1712
DraIII CACNNNGTG 1 cut(s) 47
DriI GACNNNNNGTC 1 cut(s) 1946
EaeI YGGCCR 2 cut(s) 574, 1809
Eam1104I CTCTTC 1 cut(s) 321
Eam1105I GACNNNNNGTC 1 cut(s) 1946
EarI CTCTTC 1 cut(s) 321
Eco105I TACGTA 1 cut(s) 1053
Eco130I CCWWGG 4 cut(s) 479, 682, 1678, 1812
Eco32I GATATC 1 cut(s) 1426
Eco47I GGWCC 2 cut(s) 1405, 1948
Eco57I CTGAAG 1 cut(s) 1520
Eco81I CCTNAGG 1 cut(s) 136
EcoRII CCWGG 3 cut(s) 188, 1396, 1438
EcoRV GATATC 1 cut(s) 1426
EcoT14I CCWWGG 4 cut(s) 479, 682, 1678, 1812
ErhI CCWWGG 4 cut(s) 479, 682, 1678, 1812
Esp3I CGTCTC 1 cut(s) 1569
FalI AAGNNNNNCTT 2 cut(s) 2013, 2045
FaqI GGGAC 3 cut(s) 1020, 1045, 1608
FauNDI CATATG 1 cut(s) 107
FblI GTMKAC 2 cut(s) 1833, 1939
Fnu4HI GCNGC 4 cut(s) 312, 431, 1887, 1995
FokI GGATG 3 cut(s) 1228, 1630, 1947
Fsp4HI GCNGC 4 cut(s) 312, 431, 1887, 1995
FspBI CTAG 5 cut(s) 399, 533, 843, 869, 1635
GlaI GCGC 2 cut(s) 326, 328
GluI GCNGC 4 cut(s) 312, 431, 1887, 1995
GsaI CCCAGC 1 cut(s) 731
HaeIII GGCC 4 cut(s) 576, 1443, 1656, 1811
HapII CCGG 3 cut(s) 896, 1505, 1955
HgaI GACGC 1 cut(s) 59
HhaI GCGC 2 cut(s) 327, 329
Hin6I GCGC 2 cut(s) 325, 327
HinP1I GCGC 2 cut(s) 325, 327
HincII GTYRAC 3 cut(s) 1479, 1834, 1940
HindII GTYRAC 3 cut(s) 1479, 1834, 1940
HindIII AAGCTT 2 cut(s) 783, 1181
HinfI GANTC 3 cut(s) 938, 1621, 1865
HpaII CCGG 3 cut(s) 896, 1505, 1955
HphI GGTGA 3 cut(s) 59, 1249, 1519
Hpy166II GTNNAC 7 cut(s) 167, 292, 1205, 1479, 1534, 1834, 1940
Hpy188I TCNGA 8 cut(s) 145, 258, 1165, 1233, 1500, 1713, 1726, 1870
Hpy188III TCNNGA 8 cut(s) 352, 399, 830, 843, 869, 935, 1213, 1646
Hpy8I GTNNAC 7 cut(s) 167, 292, 1205, 1479, 1534, 1834, 1940
HpyAV CCTTC 7 cut(s) 263, 1646, 1760, 1787, 1816, 1918, 2008
HpyCH4III ACNGT 3 cut(s) 541, 1093, 1580
HpyCH4IV ACGT 2 cut(s) 177, 1052
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 6 cut(s) 136, 229, 1019, 1184, 1376, 1712
HpySE526I ACGT 2 cut(s) 177, 1052
HspAI GCGC 2 cut(s) 325, 327
KpnI GGTACC 1 cut(s) 781
LguI GCTCTTC 1 cut(s) 321
LmnI GCTCC 2 cut(s) 566, 1957
Lsp1109I GCAGC 4 cut(s) 298, 442, 1898, 2006
LweI GCATC 4 cut(s) 465, 1285, 1730, 1969
MaeI CTAG 5 cut(s) 399, 533, 843, 869, 1635
MaeII ACGT 2 cut(s) 177, 1052
MaeIII GTNAC 6 cut(s) 47, 331, 535, 953, 1022, 1490
MboII GAAGA 7 cut(s) 308, 538, 591, 593, 636, 994, 1185
MfeI CAATTG 1 cut(s) 495
MflI RGATCY 3 cut(s) 19, 678, 984
MlsI TGGCCA 1 cut(s) 1811
MluNI TGGCCA 1 cut(s) 1811
MlyI GAGTC 1 cut(s) 1630
MmeI TCCRAC 2 cut(s) 265, 1975
MnlI CCTC 9 cut(s) 262, 722, 725, 850, 1159, 1371, 1873, 1876, 2016
Mox20I TGGCCA 1 cut(s) 1811
MroXI GAANNNNTTC 2 cut(s) 359, 1666
MscI TGGCCA 1 cut(s) 1811
MslI CAYNNNNRTG 1 cut(s) 1000
Msp20I TGGCCA 1 cut(s) 1811
MspCI CTTAAG 3 cut(s) 455, 1409, 2030
MspI CCGG 3 cut(s) 896, 1505, 1955
MspR9I CCNGG 3 cut(s) 190, 1398, 1440
MunI CAATTG 1 cut(s) 495
Mva1269I GAATGC 1 cut(s) 815
MvaI CCWGG 3 cut(s) 190, 1398, 1440
MvnI CGCG 1 cut(s) 327
MwoI GCNNNNNNNGC 1 cut(s) 89
NcoI CCATGG 1 cut(s) 479
NdeI CATATG 1 cut(s) 107
NlaIV GGNNCC 4 cut(s) 187, 452, 680, 779
NmuCI GTSAC 4 cut(s) 47, 331, 535, 1490
NspI RCATGY 2 cut(s) 774, 1564
PaeI GCATGC 1 cut(s) 1564
PagI TCATGA 1 cut(s) 351
PauI GCGCGC 1 cut(s) 325
PciSI GCTCTTC 1 cut(s) 321
PcsI WCGNNNNNNNCGW 1 cut(s) 1257
PctI GAATGC 1 cut(s) 815
PdmI GAANNNNTTC 2 cut(s) 359, 1666
PfeI GAWTC 2 cut(s) 938, 1865
PflMI CCANNNNNTGG 2 cut(s) 68, 447
PkrI GCNGC 4 cut(s) 313, 432, 1888, 1996
PleI GAGTC 1 cut(s) 1629
PpsI GAGTC 1 cut(s) 1629
Ppu21I YACGTR 1 cut(s) 1053
PshBI ATTAAT 2 cut(s) 87, 264
Psp6I CCWGG 3 cut(s) 188, 1396, 1438
PspFI CCCAGC 1 cut(s) 727
PspGI CCWGG 3 cut(s) 188, 1396, 1438
PspN4I GGNNCC 4 cut(s) 187, 452, 680, 779
PspPI GGNCC 2 cut(s) 1405, 1948
PsrI GAACNNNNNNTAC 7 cut(s) 150, 178, 182, 210, 1962, 1994, 2019
PsuI RGATCY 3 cut(s) 19, 678, 984
PteI GCGCGC 1 cut(s) 325
RsaI GTAC 9 cut(s) 180, 779, 802, 1051, 1131, 1206, 1639, 1971, 2028
RsaNI GTAC 9 cut(s) 179, 778, 801, 1050, 1130, 1205, 1638, 1970, 2027
RseI CAYNNNNRTG 1 cut(s) 1000
SalI GTCGAC 2 cut(s) 1832, 1938
SapI GCTCTTC 1 cut(s) 321
SatI GCNGC 4 cut(s) 312, 431, 1887, 1995
Sau96I GGNCC 2 cut(s) 1405, 1948
ScaI AGTACT 2 cut(s) 1971, 2028
SchI GAGTC 1 cut(s) 1630
ScrFI CCNGG 3 cut(s) 190, 1398, 1440
SfaNI GCATC 4 cut(s) 465, 1285, 1730, 1969
SinI GGWCC 2 cut(s) 1405, 1948
SmiMI CAYNNNNRTG 1 cut(s) 1000
SmlI CTYRAG 3 cut(s) 455, 1409, 2030
SmoI CTYRAG 3 cut(s) 455, 1409, 2030
SnaBI TACGTA 1 cut(s) 1053
SphI GCATGC 1 cut(s) 1564
SsiI CCGC 3 cut(s) 66, 509, 909
SspI AATATT 2 cut(s) 614, 930
SspMI CTAG 5 cut(s) 399, 533, 843, 869, 1635
StyD4I CCNGG 3 cut(s) 188, 1396, 1438
StyI CCWWGG 4 cut(s) 479, 682, 1678, 1812
TaaI ACNGT 3 cut(s) 541, 1093, 1580
TaiI ACGT 2 cut(s) 180, 1055
TaqI TCGA 9 cut(s) 384, 410, 469, 488, 1190, 1428, 1833, 1939, 2038
TaqII GACCGA 1 cut(s) 1393
TatI WGTACW 6 cut(s) 800, 1129, 1204, 1637, 1969, 2026
TfiI GAWTC 2 cut(s) 938, 1865
TscAI CASTG 1 cut(s) 340
TseFI GTSAC 4 cut(s) 47, 331, 535, 1490
TseI GCWGC 4 cut(s) 311, 430, 1886, 1994
Tsp45I GTSAC 4 cut(s) 47, 331, 535, 1490
TspRI CASTG 1 cut(s) 340
Van91I CCANNNNNTGG 2 cut(s) 68, 447
Vha464I CTTAAG 3 cut(s) 455, 1409, 2030
VpaK11BI GGWCC 2 cut(s) 1405, 1948
VspI ATTAAT 2 cut(s) 87, 264
XapI RAATTY 6 cut(s) 298, 624, 653, 875, 970, 1907
XbaI TCTAGA 3 cut(s) 398, 842, 868
XceI RCATGY 2 cut(s) 774, 1564
XcmI CCANNNNNNNNNTGG 1 cut(s) 724
XmiI GTMKAC 2 cut(s) 1833, 1939
XmnI GAANNNNTTC 2 cut(s) 359, 1666
XspI CTAG 5 cut(s) 399, 533, 843, 869, 1635
ZrmI AGTACT 2 cut(s) 1971, 2028
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.