Rw3G024350

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000119
Physical Location & Seq
Reverse (-)
31250332 .. 31257537
7206 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G024350.1

Sequence Viewer

Length: 1053 bp
ATGTCTAGCAAGCAGGTACCCGATGAAGACCCTATGATGAGCATCACTCGGAGAAGCAAGTACAATTCTGACAATGTTGAGTCGCAACCGCGAGATCCCCTGTGGAGAGATCCAGATGCAGTTTCAACAAAACAAAAATTGGAAGAAACACTTCTTTCAGTTTCATTCTGGAATACGATGTTCGTAATTACATGTGTGATTGCGGTCTCATTAGACCCGTTGTTCTTCTACATTCCGGTCATCAATGAAGAACAAAAGTGCCTTGCAGTAGACAAAGAGTTGAGGAATATAGCTCTCACTTTGCGATCGCTCACTGATGTCACTTTCGTAGTGAATATCATATATCATGTTTGCAAAGCCATTAACGATGCGTACAAAGTACACAAAGAAAAAAAGTCTGATGAATTGGCATCGGATTGGGAATTTTCGAAGGTATCAGCAGCTGAGATAATTCCATTTGCTAAATTAGTTGCTGGGAAGCTAGCATGGCACTCTACGCTAACCAGCATTTTAGCTGTTTTTCCCATGCCACAACTACTTCTAGTATTTGTCTTCTTCAAAATGAGAGCCGGCCATGTATACTTGGAGCGTAGAAAGATTTTAAACGTCTTTCTCTTCGCTCAATATCTGCCAAGAATTTATCGAATTTACCTATCATCTCAGAAACTCAGACAAACTACTGGAATATGGACTAAAGCTCTGTTTAATTTTTTTCTATATATCCTTGCAAGCCATGTTCTTGGAGCTTTTTGGTACTTCTTTTCTATTCAACGAGAAACTTCCACTACTAGGAAGAGATGTATGAGTACCTTTTACTGCAAGGGTCACAATACTACTGCAAGAAATGCCACATTTCTCAATCAATTGTGTCCTATAAGTGGTGAAGAGAATTCTAATACCCCTTTTGATTTTGGAATATTTTTGGATTCCCTAAAAAATGGTATCACAGGGGATATACATTTCGCAACGAAGTTATCTTACTCTTTTTGGTGGGGATTACGTAATCTAAGATTTGCTTATGTGCATGGAAAGTCAACTATTGTTTTACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

350

Amino Acids

40.47

Weight (kDa)

9.3

Isoelectric Point (pI)

42.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 4
Acc65I GGTACC 1 cut(s) 16
AccB1I GGYRCC 1 cut(s) 16
AccI GTMKAC 2 cut(s) 270, 579
AccII CGCG 1 cut(s) 91
AciI CCGC 2 cut(s) 89, 203
AclWI GGATC 2 cut(s) 89, 104
AcoI YGGCCR 1 cut(s) 571
AcsI RAATTY 4 cut(s) 422, 636, 645, 889
AfaI GTAC 6 cut(s) 18, 62, 374, 381, 755, 808
AfiI CCNNNNNNNGG 2 cut(s) 789, 878
AflIII ACRYGT 1 cut(s) 191
AgsI TTSAA 3 cut(s) 126, 559, 770
AluBI AGCT 6 cut(s) 293, 443, 481, 515, 698, 746
AluI AGCT 6 cut(s) 293, 443, 481, 515, 698, 746
Alw26I GTCTC 1 cut(s) 211
AlwI GGATC 2 cut(s) 89, 104
AlwNI CAGNNNCTG 1 cut(s) 443
AoxI GGCC 1 cut(s) 571
ApeKI GCWGC 1 cut(s) 440
ApoI RAATTY 4 cut(s) 422, 636, 645, 889
AsiSI GCGATCGC 1 cut(s) 308
Asp700I GAANNNNTTC 1 cut(s) 150
Asp718I GGTACC 1 cut(s) 16
AsuHPI GGTGA 1 cut(s) 893
AsuII TTCGAA 1 cut(s) 428
AsuNHI GCTAGC 1 cut(s) 481
BanI GGYRCC 1 cut(s) 16
BarI GAAGNNNNNNTAC 2 cut(s) 962, 994
BbsI GAAGAC 2 cut(s) 33, 544
BbvI GCAGC 1 cut(s) 452
BcoDI GTCTC 1 cut(s) 211
BfaI CTAG 4 cut(s) 6, 482, 542, 789
BfuAI ACCTGC 1 cut(s) 4
BisI GCNGC 1 cut(s) 441
BlsI GCNGC 1 cut(s) 442
BmiI GGNNCC 1 cut(s) 18
BmsI GCATC 4 cut(s) 51, 106, 358, 419
BmtI GCTAGC 1 cut(s) 485
BpiI GAAGAC 2 cut(s) 33, 544
BplI GAGNNNNNCTC 2 cut(s) 31, 63
Bpu14I TTCGAA 1 cut(s) 428
BsaAI YACGTR 1 cut(s) 1001
BsaBI GATNNNNATC 1 cut(s) 41
BsaI GGTCTC 1 cut(s) 211
BsaWI WCCGGW 1 cut(s) 235
Bsc4I CCNNNNNNNGG 2 cut(s) 789, 878
Bse118I RCCGGY 1 cut(s) 569
Bse1I ACTGG 1 cut(s) 685
Bse8I GATNNNNATC 1 cut(s) 41
BseJI GATNNNNATC 1 cut(s) 41
BseLI CCNNNNNNNGG 2 cut(s) 789, 878
BseMII CTCAG 3 cut(s) 435, 674, 682
BseNI ACTGG 1 cut(s) 685
BseXI GCAGC 1 cut(s) 452
BseYI CCCAGC 1 cut(s) 473
Bsh1236I CGCG 1 cut(s) 91
Bsh1285I CGRYCG 1 cut(s) 308
BshFI GGCC 1 cut(s) 573
BshNI GGYRCC 1 cut(s) 16
BsiEI CGRYCG 1 cut(s) 308
BsiSI CCGG 2 cut(s) 236, 570
BslI CCNNNNNNNGG 2 cut(s) 789, 878
BsmAI GTCTC 1 cut(s) 211
BsnI GGCC 1 cut(s) 573
Bso31I GGTCTC 1 cut(s) 211
Bsp119I TTCGAA 1 cut(s) 428
Bsp143I GATC 3 cut(s) 94, 109, 305
BspACI CCGC 2 cut(s) 89, 203
BspANI GGCC 1 cut(s) 573
BspCNI CTCAG 3 cut(s) 436, 673, 681
BspFNI CGCG 1 cut(s) 91
BspLI GGNNCC 1 cut(s) 18
BspMI ACCTGC 1 cut(s) 4
BspOI GCTAGC 1 cut(s) 485
BspPI GGATC 2 cut(s) 89, 104
BspT104I TTCGAA 1 cut(s) 428
BspT107I GGYRCC 1 cut(s) 16
BspTNI GGTCTC 1 cut(s) 211
BsrFI RCCGGY 1 cut(s) 569
BsrI ACTGG 1 cut(s) 685
BssAI RCCGGY 1 cut(s) 569
BssMI GATC 3 cut(s) 94, 109, 305
BssNAI GTATAC 1 cut(s) 580
Bst1107I GTATAC 1 cut(s) 580
Bst6I CTCTTC 3 cut(s) 620, 788, 879
BstAPI GCANNNNNTGC 1 cut(s) 845
BstBAI YACGTR 1 cut(s) 1001
BstBI TTCGAA 1 cut(s) 428
BstC8I GCNNGC 4 cut(s) 11, 483, 571, 730
BstDEI CTNAG 4 cut(s) 444, 660, 668, 1007
BstFNI CGCG 1 cut(s) 91
BstKTI GATC 3 cut(s) 97, 112, 308
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 3 cut(s) 94, 109, 305
BstMCI CGRYCG 1 cut(s) 308
BstMWI GCNNNNNNNGC 3 cut(s) 487, 496, 845
BstNSI RCATGY 1 cut(s) 195
BstSNI TACGTA 1 cut(s) 1001
BstUI CGCG 1 cut(s) 91
BstV1I GCAGC 1 cut(s) 452
BstV2I GAAGAC 2 cut(s) 33, 544
BstX2I RGATCY 2 cut(s) 94, 109
BstXI CCANNNNNNTGG 1 cut(s) 740
BstYI RGATCY 2 cut(s) 94, 109
BstZ17I GTATAC 1 cut(s) 580
BsuRI GGCC 1 cut(s) 573
BtsIMutI CAGTG 1 cut(s) 312
BveI ACCTGC 1 cut(s) 4
Cac8I GCNNGC 4 cut(s) 11, 483, 571, 730
CaiI CAGNNNCTG 1 cut(s) 443
Cfr10I RCCGGY 1 cut(s) 569
Csp6I GTAC 6 cut(s) 17, 61, 373, 380, 754, 807
CviAII CATG 7 cut(s) 192, 347, 486, 526, 575, 734, 1025
CviQI GTAC 6 cut(s) 17, 61, 373, 380, 754, 807
DdeI CTNAG 4 cut(s) 444, 660, 668, 1007
DpnI GATC 3 cut(s) 96, 111, 307
DpnII GATC 3 cut(s) 94, 109, 305
DraI TTTAAA 1 cut(s) 603
EaeI YGGCCR 1 cut(s) 571
Eam1104I CTCTTC 3 cut(s) 620, 788, 879
EarI CTCTTC 3 cut(s) 620, 788, 879
Eco105I TACGTA 1 cut(s) 1001
Eco31I GGTCTC 1 cut(s) 211
EcoRI GAATTC 1 cut(s) 889
FaeI CATG 7 cut(s) 195, 350, 489, 529, 578, 737, 1028
FalI AAGNNNNNCTT 4 cut(s) 135, 167, 1000, 1032
FatI CATG 7 cut(s) 191, 346, 485, 525, 574, 733, 1024
FblI GTMKAC 2 cut(s) 270, 579
Fnu4HI GCNGC 1 cut(s) 441
Fsp4HI GCNGC 1 cut(s) 441
FspBI CTAG 4 cut(s) 6, 482, 542, 789
GluI GCNGC 1 cut(s) 441
GsaI CCCAGC 1 cut(s) 477
HaeIII GGCC 1 cut(s) 573
HapII CCGG 2 cut(s) 236, 570
Hin1II CATG 7 cut(s) 195, 350, 489, 529, 578, 737, 1028
HincII GTYRAC 1 cut(s) 1035
HindII GTYRAC 1 cut(s) 1035
HinfI GANTC 2 cut(s) 80, 926
HpaII CCGG 2 cut(s) 236, 570
HphI GGTGA 1 cut(s) 893
Hpy166II GTNNAC 4 cut(s) 271, 382, 580, 1035
Hpy188I TCNGA 6 cut(s) 51, 70, 400, 415, 663, 671
Hpy188III TCNNGA 2 cut(s) 113, 169
Hpy8I GTNNAC 4 cut(s) 271, 382, 580, 1035
HpyAV CCTTC 1 cut(s) 424
HpyCH4IV ACGT 2 cut(s) 606, 1000
HpyCH4V TGCA 7 cut(s) 119, 266, 354, 728, 819, 839, 1024
HpyF10VI GCNNNNNNNGC 3 cut(s) 487, 496, 845
HpyF3I CTNAG 4 cut(s) 444, 660, 668, 1007
HpySE526I ACGT 2 cut(s) 606, 1000
Hsp92II CATG 7 cut(s) 195, 350, 489, 529, 578, 737, 1028
KpnI GGTACC 1 cut(s) 20
KroI GCCGGC 1 cut(s) 569
KroNI GCCGGC 1 cut(s) 571
Kzo9I GATC 3 cut(s) 94, 109, 305
LmnI GCTCC 2 cut(s) 586, 743
LpnPI CCDG 9 cut(s) 113, 126, 154, 249, 459, 517, 583, 666, 933
Lsp1109I GCAGC 1 cut(s) 452
LweI GCATC 4 cut(s) 51, 106, 358, 419
MaeI CTAG 4 cut(s) 6, 482, 542, 789
MaeII ACGT 2 cut(s) 606, 1000
MaeIII GTNAC 2 cut(s) 319, 824
MalI GATC 3 cut(s) 96, 111, 307
MboI GATC 3 cut(s) 94, 109, 305
MboII GAAGA 9 cut(s) 38, 155, 217, 260, 544, 547, 607, 805, 896
MfeI CAATTG 1 cut(s) 863
MflI RGATCY 2 cut(s) 94, 109
MlyI GAGTC 1 cut(s) 89
MnlI CCTC 1 cut(s) 276
MroNI GCCGGC 1 cut(s) 569
MroXI GAANNNNTTC 1 cut(s) 150
MseI TTAA 3 cut(s) 363, 602, 705
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 2 cut(s) 236, 570
MunI CAATTG 1 cut(s) 863
MvnI CGCG 1 cut(s) 91
MwoI GCNNNNNNNGC 3 cut(s) 487, 496, 845
NaeI GCCGGC 1 cut(s) 571
NdeII GATC 3 cut(s) 94, 109, 305
NgoMIV GCCGGC 1 cut(s) 569
NheI GCTAGC 1 cut(s) 481
NlaIII CATG 7 cut(s) 195, 350, 489, 529, 578, 737, 1028
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 2 cut(s) 319, 824
NspI RCATGY 1 cut(s) 195
NspV TTCGAA 1 cut(s) 428
PciI ACATGT 1 cut(s) 191
PdiI GCCGGC 1 cut(s) 571
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 1 cut(s) 926
PkrI GCNGC 1 cut(s) 442
Ple19I CGATCG 1 cut(s) 308
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
Ppu21I YACGTR 1 cut(s) 1001
PscI ACATGT 1 cut(s) 191
PspFI CCCAGC 1 cut(s) 473
PspN4I GGNNCC 1 cut(s) 18
PstNI CAGNNNCTG 1 cut(s) 443
PsuI RGATCY 2 cut(s) 94, 109
PvuI CGATCG 1 cut(s) 308
PvuII CAGCTG 1 cut(s) 443
RgaI GCGATCGC 1 cut(s) 308
RsaI GTAC 6 cut(s) 18, 62, 374, 381, 755, 808
RsaNI GTAC 6 cut(s) 17, 61, 373, 380, 754, 807
SaqAI TTAA 3 cut(s) 363, 602, 705
SatI GCNGC 1 cut(s) 441
Sau3AI GATC 3 cut(s) 94, 109, 305
SchI GAGTC 1 cut(s) 89
SfaAI GCGATCGC 1 cut(s) 308
SfaNI GCATC 4 cut(s) 51, 106, 358, 419
SfuI TTCGAA 1 cut(s) 428
SgfI GCGATCGC 1 cut(s) 308
SnaBI TACGTA 1 cut(s) 1001
SsiI CCGC 2 cut(s) 89, 203
SspI AATATT 1 cut(s) 918
SspMI CTAG 4 cut(s) 6, 482, 542, 789
TaiI ACGT 2 cut(s) 609, 1003
TaqI TCGA 2 cut(s) 428, 643
TatI WGTACW 2 cut(s) 60, 379
TfiI GAWTC 1 cut(s) 926
Tru1I TTAA 3 cut(s) 363, 602, 705
Tru9I TTAA 3 cut(s) 363, 602, 705
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 2 cut(s) 319, 824
TseI GCWGC 1 cut(s) 440
Tsp45I GTSAC 2 cut(s) 319, 824
TspDTI ATGAA 4 cut(s) 39, 153, 261, 417
TspRI CASTG 1 cut(s) 319
XapI RAATTY 4 cut(s) 422, 636, 645, 889
XceI RCATGY 1 cut(s) 195
XmiI GTMKAC 2 cut(s) 270, 579
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 4 cut(s) 6, 482, 542, 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.