MD07G1291700.v1.1

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000119
Physical Location & Seq
Reverse (-)
35249438 .. 35256593
7156 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1291700.v1.1.491

Sequence Viewer

Length: 1848 bp
ATGGCTAGAAGAGAAGCTTTAGATGTGGAGAACCAGGAAAGATCTGTTATAGGACAGTGCAAATCAACGATTACAATGGCATTAGATGCCCTAATAAAGGGGATGCAGGATGGACAGTGGAAATTACATCCCAAGCGGAGTATGATATTTGTTATGCTATGTGTGTTTGCCATCTCAATAGATCCTTTGTTCTTTTACATTTTAATCATTGATCAAGATTACAAGTGCCTTCAAATGGACAAAAAGCTGAGAACTACTGTTCTTGTGTTGCGATCACTCACGGATATCATTTTCGCCGTGCCTTTTATATATAAAATTTACGTTGGTGTTCAAGCTCAAATGCACAAAAATTCGGGGACTAATGAGGCTGCAAATACCATGACAAATTTGTATCGGGAATCAAAAAGGGAAGAGTTGATTGAAGTTGGCAAGAAAATTGATCAGAAGATGTCGTGGTTATATTTCTCCATCATAAATGATTTTCTCGCTCTTCTTCCTGTCCCACAACTGCTAATAGTAGTTACTTTTTACCATATGAGAGGCGCTGAATATGTGGAGCATAGAACGATCATGAATGTCTTCATTGTTGGTCAATATCTACCAAGGATATATCGAATTCACCGGTCCTCTGAGGAACTTCGAAAGAATGCTGGAATTTGGGTTAAAGGTCTATTATATTTTTTTCTCTACATGGTTGCCAGTCACATACTTGGAGCTTTATGGTATTTCTTTTCTATTCAACAAGAGACATTATGCTGGCACAATGCCTGTGCAAAACATAGTCCAGATCCTATTGGATGTATGAATACTTTCTACTGTGGACGTCGAACTACTACTTCGAGAAATATAACGCTTCTTAATGAGTATTGCCCGTTAGATACTCCAGATGGTGCCTTACCACCATTTAATTTCGGAATATTTCTCGATTCCCTTAAGAACCATAACTTAGAGAATATAAAGTTCGAAAAGAAGTTCTTTTACTCTTTCTGGTGGGGCTTGCGAAATCTAAGTAATTTTGGGACGAATCTGACAACAAGTACATATGTGATGGAAAACTTGTTTGCGATTCTCATTTCTGCCTTGGGCTTGCTACTATTTCTATATCTCATTGGAAACGTGCAGACTTTTATACAGATGGAAGCTACAAAAAAAGAGGAGATGAGAGGCGGAAAGATATATGAGAAGAGGCAATGGGTACGCATCCAGGTAGACATCTGGATGCAGGAACATAAATTCCCTGATGATATCAAGAACGAAATCAGGAATAGCATAGAGCAAGCATTGAAAAGTAACAAAGATGTTGATGTCAACAACCCATTCCTTATTCTTTATCCGAAAACCAAAATATCTATAAAACGCTTTCTTTTCATGGATACACTTAGAACAGTAAATATACTTAAAGACACAAATCAAAGAGTGTTGGAGTTGATGTGCGACTATCTGAAGCCAGTGACATACAGTTTTAACAGTTTCGTTTTTCGAATTGGAGATCCACTCGACTGCATGCTGTTCATTATCGAAGGGACAATGTGGACCTACACGTCGAGTGATAGTCATGCTGGGCAAGGAATCTCATCAATGGCCATCAAGCCCCTCAGGAAAGGTGACTTTTACGGGGAAGAGCTTCTCGATTGGGCATCAGACAGTTTCACCGAACTTCCAGTCTCCAGCAAATATGTCAAAAGTCAGACAAAAGTAGAAGCATTTGTACTCATGGCCAAGGACTTGGAAACCGTAGTCTCCAGATGCAAAAACTATTGGGGCTTGTACAATCCCGAAGAGGTGGCACTTTCAACTGTTCGTCGTATCCGTAGAAGGGCAACAACGTCCGCGCCCGTCCCCGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

616

Amino Acids

71.47

Weight (kDa)

8.91

Isoelectric Point (pI)

45.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 49 - 381 1.2e-09 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1540
AatII GACGTC 1 cut(s) 826
AccB1I GGYRCC 1 cut(s) 890
AccI GTMKAC 1 cut(s) 1209
AccII CGCG 1 cut(s) 1832
AciI CCGC 3 cut(s) 136, 1167, 1830
AclWI GGATC 3 cut(s) 176, 782, 1484
AcoI YGGCCR 2 cut(s) 1581, 1716
AcsI RAATTY 6 cut(s) 315, 349, 385, 615, 654, 1232
AcuI CTGAAG 1 cut(s) 1463
AcyI GRCGYC 1 cut(s) 823
AfaI GTAC 4 cut(s) 1039, 1197, 1710, 1769
AfiI CCNNNNNNNGG 4 cut(s) 97, 235, 1816, 1841
AflII CTTAAG 1 cut(s) 932
AflIII ACRYGT 1 cut(s) 1539
AgeI ACCGGT 1 cut(s) 621
AgsI TTSAA 6 cut(s) 233, 332, 422, 740, 1285, 1794
AjiI CACGTC 1 cut(s) 1542
AjnI CCWGG 2 cut(s) 33, 1203
AloI GAACNNNNNNTCC 2 cut(s) 1218, 1250
AluBI AGCT 6 cut(s) 17, 247, 335, 716, 1142, 1624
AluI AGCT 6 cut(s) 17, 247, 335, 716, 1142, 1624
Alw26I GTCTC 3 cut(s) 740, 1669, 1744
AlwI GGATC 3 cut(s) 176, 782, 1484
AoxI GGCC 2 cut(s) 1581, 1716
ApeKI GCWGC 1 cut(s) 368
ApoI RAATTY 6 cut(s) 315, 349, 385, 615, 654, 1232
ArsI GACNNNNNNTTYG 2 cut(s) 1647, 1679
AsiGI ACCGGT 1 cut(s) 621
Asp700I GAANNNNTTC 3 cut(s) 578, 809, 1623
AspLEI GCGC 2 cut(s) 545, 1834
AspS9I GGNCC 2 cut(s) 624, 1533
AsuC2I CCSGG 1 cut(s) 1842
AsuHPI GGTGA 3 cut(s) 611, 1616, 1642
AsuII TTCGAA 3 cut(s) 640, 963, 1480
AvaII GGWCC 2 cut(s) 624, 1533
AxyI CCTNAGG 1 cut(s) 1595
BalI TGGCCA 2 cut(s) 1583, 1718
BanI GGYRCC 1 cut(s) 890
BarI GAAGNNNNNNTAC 4 cut(s) 962, 994, 1692, 1724
BbsI GAAGAC 1 cut(s) 571
BbvI GCAGC 1 cut(s) 355
BccI CCATC 7 cut(s) 104, 179, 476, 881, 1042, 1129, 1592
BceAI ACGGC 1 cut(s) 281
BciT130I CCWGG 2 cut(s) 35, 1205
BciVI GTATCC 2 cut(s) 1366, 1817
BclI TGATCA 2 cut(s) 211, 439
BcnI CCSGG 1 cut(s) 1842
BcoDI GTCTC 3 cut(s) 740, 1669, 1744
BfaI CTAG 1 cut(s) 6
BfoI RGCGCY 1 cut(s) 546
BfrI CTTAAG 1 cut(s) 932
BfuI GTATCC 2 cut(s) 1366, 1817
BglII AGATCT 1 cut(s) 41
BisI GCNGC 1 cut(s) 369
BlsI GCNGC 1 cut(s) 370
Bme1390I CCNGG 3 cut(s) 35, 1205, 1842
Bme18I GGWCC 2 cut(s) 624, 1533
BmgBI CACGTC 1 cut(s) 1542
BmgT120I GGNCC 2 cut(s) 624, 1533
BmiI GGNNCC 1 cut(s) 892
BmrFI CCNGG 3 cut(s) 35, 1205, 1842
BmsI GCATC 6 cut(s) 76, 93, 1209, 1209, 1646, 1736
BpiI GAAGAC 1 cut(s) 571
BplI GAGNNNNNCTC 2 cut(s) 1479, 1511
BpmI CTGGAG 3 cut(s) 867, 1651, 1726
Bpu14I TTCGAA 3 cut(s) 640, 963, 1480
BpuMI CCSGG 1 cut(s) 1842
BsaHI GRCGYC 1 cut(s) 823
BsaJI CCNNGG 4 cut(s) 602, 1080, 1719, 1840
BsaWI WCCGGW 1 cut(s) 621
BsaXI ACNNNNNCTCC 2 cut(s) 1415, 1445
Bsc4I CCNNNNNNNGG 4 cut(s) 97, 235, 1816, 1841
Bse118I RCCGGY 1 cut(s) 621
Bse1I ACTGG 3 cut(s) 699, 1448, 1661
Bse21I CCTNAGG 1 cut(s) 1595
Bse3DI GCAATG 1 cut(s) 1196
BseBI CCWGG 2 cut(s) 35, 1205
BseDI CCNNGG 4 cut(s) 602, 1080, 1719, 1840
BseGI GGATG 6 cut(s) 108, 115, 127, 803, 1200, 1224
BseLI CCNNNNNNNGG 4 cut(s) 97, 235, 1816, 1841
BseMI GCAATG 1 cut(s) 1196
BseMII CTCAG 3 cut(s) 239, 621, 1609
BseNI ACTGG 3 cut(s) 699, 1448, 1661
BseRI GAGGAG 1 cut(s) 1169
BseXI GCAGC 1 cut(s) 355
BseYI CCCAGC 1 cut(s) 1559
BsgI GTGCAG 1 cut(s) 1139
Bsh1236I CGCG 1 cut(s) 1832
BshFI GGCC 2 cut(s) 1583, 1718
BshNI GGYRCC 1 cut(s) 890
BshTI ACCGGT 1 cut(s) 621
BsiSI CCGG 2 cut(s) 622, 1842
BslFI GGGAC 5 cut(s) 370, 485, 1033, 1537, 1823
BslI CCNNNNNNNGG 4 cut(s) 97, 235, 1816, 1841
BsmAI GTCTC 3 cut(s) 740, 1669, 1744
BsmFI GGGAC 5 cut(s) 370, 485, 1033, 1537, 1823
BsmI GAATGC 1 cut(s) 652
BsnI GGCC 2 cut(s) 1583, 1718
Bsp119I TTCGAA 3 cut(s) 640, 963, 1480
Bsp1407I TGTACA 1 cut(s) 1767
Bsp143I GATC 8 cut(s) 41, 181, 211, 272, 439, 567, 787, 1489
BspACI CCGC 3 cut(s) 136, 1167, 1830
BspANI GGCC 2 cut(s) 1583, 1718
BspCNI CTCAG 3 cut(s) 240, 622, 1608
BspFNI CGCG 1 cut(s) 1832
BspHI TCATGA 1 cut(s) 570
BspLI GGNNCC 1 cut(s) 892
BspPI GGATC 3 cut(s) 176, 782, 1484
BspQI GCTCTTC 2 cut(s) 495, 1614
BspT104I TTCGAA 3 cut(s) 640, 963, 1480
BspT107I GGYRCC 1 cut(s) 890
BspTI CTTAAG 1 cut(s) 932
BsrDI GCAATG 1 cut(s) 1196
BsrFI RCCGGY 1 cut(s) 621
BsrGI TGTACA 1 cut(s) 1767
BsrI ACTGG 3 cut(s) 699, 1448, 1661
BssAI RCCGGY 1 cut(s) 621
BssECI CCNNGG 4 cut(s) 602, 1080, 1719, 1840
BssMI GATC 8 cut(s) 41, 181, 211, 272, 439, 567, 787, 1489
BssNI GRCGYC 1 cut(s) 823
BssT1I CCWWGG 3 cut(s) 602, 1080, 1719
Bst2UI CCWGG 2 cut(s) 35, 1205
Bst6I CTCTTC 6 cut(s) 4, 405, 495, 1178, 1614, 1773
BstACI GRCGYC 1 cut(s) 823
BstAFI CTTAAG 1 cut(s) 932
BstAPI GCANNNNNTGC 1 cut(s) 86
BstAUI TGTACA 1 cut(s) 1767
BstBI TTCGAA 3 cut(s) 640, 963, 1480
BstC8I GCNNGC 5 cut(s) 758, 998, 1088, 1278, 1505
BstDEI CTNAG 6 cut(s) 248, 630, 946, 1007, 1379, 1595
BstENI CCTNNNNNAGG 1 cut(s) 95
BstF5I GGATG 6 cut(s) 108, 115, 127, 803, 1200, 1224
BstFNI CGCG 1 cut(s) 1832
BstH2I RGCGCY 1 cut(s) 546
BstHHI GCGC 2 cut(s) 545, 1834
BstKTI GATC 8 cut(s) 44, 184, 214, 275, 442, 570, 790, 1492
BstMAI GTCTC 3 cut(s) 740, 1669, 1744
BstMBI GATC 8 cut(s) 41, 181, 211, 272, 439, 567, 787, 1489
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNI CCWGG 2 cut(s) 35, 1205
BstNSI RCATGY 1 cut(s) 1507
BstSCI CCNGG 3 cut(s) 33, 1203, 1840
BstUI CGCG 1 cut(s) 1832
BstV1I GCAGC 1 cut(s) 355
BstV2I GAAGAC 1 cut(s) 571
BstX2I RGATCY 4 cut(s) 41, 181, 787, 1489
BstXI CCANNNNNNTGG 1 cut(s) 1726
BstYI RGATCY 4 cut(s) 41, 181, 787, 1489
Bsu36I CCTNAGG 1 cut(s) 1595
BsuI GTATCC 2 cut(s) 1366, 1817
BsuRI GGCC 2 cut(s) 1583, 1718
BtrI CACGTC 1 cut(s) 1542
BtsCI GGATG 6 cut(s) 108, 115, 127, 803, 1200, 1224
BtsIMutI CAGTG 3 cut(s) 62, 122, 1455
Cac8I GCNNGC 5 cut(s) 758, 998, 1088, 1278, 1505
CciI TCATGA 1 cut(s) 570
CfoI GCGC 2 cut(s) 545, 1834
Cfr10I RCCGGY 1 cut(s) 621
Cfr13I GGNCC 2 cut(s) 624, 1533
Csp6I GTAC 4 cut(s) 1038, 1196, 1709, 1768
CspAI ACCGGT 1 cut(s) 621
CviAII CATG 7 cut(s) 379, 571, 691, 1369, 1504, 1556, 1714
CviQI GTAC 4 cut(s) 1038, 1196, 1709, 1768
DdeI CTNAG 6 cut(s) 248, 630, 946, 1007, 1379, 1595
DpnI GATC 8 cut(s) 43, 183, 213, 274, 441, 569, 789, 1491
DpnII GATC 8 cut(s) 41, 181, 211, 272, 439, 567, 787, 1489
DrdI GACNNNNNNGTC 1 cut(s) 1540
DseDI GACNNNNNNGTC 1 cut(s) 1540
EaeI YGGCCR 2 cut(s) 1581, 1716
Eam1104I CTCTTC 6 cut(s) 4, 405, 495, 1178, 1614, 1773
EarI CTCTTC 6 cut(s) 4, 405, 495, 1178, 1614, 1773
EciI GGCGGA 1 cut(s) 1182
Eco130I CCWWGG 3 cut(s) 602, 1080, 1719
Eco32I GATATC 2 cut(s) 286, 1246
Eco47I GGWCC 2 cut(s) 624, 1533
Eco57I CTGAAG 1 cut(s) 1463
Eco81I CCTNAGG 1 cut(s) 1595
EcoNI CCTNNNNNAGG 1 cut(s) 95
EcoRI GAATTC 1 cut(s) 615
EcoRII CCWGG 2 cut(s) 33, 1203
EcoRV GATATC 2 cut(s) 286, 1246
EcoT14I CCWWGG 3 cut(s) 602, 1080, 1719
ErhI CCWWGG 3 cut(s) 602, 1080, 1719
FaeI CATG 7 cut(s) 382, 574, 694, 1372, 1507, 1559, 1717
FalI AAGNNNNNCTT 3 cut(s) 33, 959, 991
FaqI GGGAC 5 cut(s) 370, 485, 1033, 1537, 1823
FatI CATG 7 cut(s) 378, 570, 690, 1368, 1503, 1555, 1713
FauNDI CATATG 2 cut(s) 534, 1042
FbaI TGATCA 2 cut(s) 211, 439
FblI GTMKAC 1 cut(s) 1209
Fnu4HI GCNGC 1 cut(s) 369
FokI GGATG 6 cut(s) 114, 115, 122, 810, 1187, 1231
Fsp4HI GCNGC 1 cut(s) 369
FspBI CTAG 1 cut(s) 6
GlaI GCGC 2 cut(s) 544, 1833
GluI GCNGC 1 cut(s) 369
GsaI CCCAGC 1 cut(s) 1563
GsuI CTGGAG 3 cut(s) 867, 1651, 1726
HaeII RGCGCY 1 cut(s) 546
HaeIII GGCC 2 cut(s) 1583, 1718
HapII CCGG 2 cut(s) 622, 1842
HhaI GCGC 2 cut(s) 545, 1834
Hin1I GRCGYC 1 cut(s) 823
Hin1II CATG 7 cut(s) 382, 574, 694, 1372, 1507, 1559, 1717
Hin6I GCGC 2 cut(s) 543, 1832
HinP1I GCGC 2 cut(s) 543, 1832
HincII GTYRAC 1 cut(s) 1309
HindII GTYRAC 1 cut(s) 1309
HindIII AAGCTT 1 cut(s) 15
HinfI GANTC 5 cut(s) 398, 926, 1024, 1066, 1569
HpaII CCGG 2 cut(s) 622, 1842
HphI GGTGA 3 cut(s) 611, 1616, 1642
Hpy166II GTNNAC 4 cut(s) 821, 1210, 1309, 1533
Hpy188I TCNGA 8 cut(s) 444, 631, 914, 1029, 1335, 1443, 1642, 1689
Hpy8I GTNNAC 4 cut(s) 821, 1210, 1309, 1533
Hpy99I CGWCG 3 cut(s) 828, 1546, 1806
HpyAV CCTTC 3 cut(s) 239, 1514, 1809
HpyCH4IV ACGT 5 cut(s) 321, 823, 1116, 1541, 1826
HpyCH4V TGCA 9 cut(s) 60, 106, 343, 371, 773, 1120, 1222, 1503, 1749
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 6 cut(s) 248, 630, 946, 1007, 1379, 1595
HpySE526I ACGT 5 cut(s) 321, 823, 1116, 1541, 1826
Hsp92I GRCGYC 1 cut(s) 823
Hsp92II CATG 7 cut(s) 382, 574, 694, 1372, 1507, 1559, 1717
HspAI GCGC 2 cut(s) 543, 1832
Ksp22I TGATCA 2 cut(s) 211, 439
Kzo9I GATC 8 cut(s) 41, 181, 211, 272, 439, 567, 787, 1489
LguI GCTCTTC 2 cut(s) 495, 1614
LmnI GCTCC 2 cut(s) 556, 713
Lsp1109I GCAGC 1 cut(s) 355
LweI GCATC 6 cut(s) 76, 93, 1209, 1209, 1646, 1736
MaeI CTAG 1 cut(s) 6
MaeII ACGT 5 cut(s) 321, 823, 1116, 1541, 1826
MaeIII GTNAC 5 cut(s) 520, 701, 1289, 1450, 1604
MalI GATC 8 cut(s) 43, 183, 213, 274, 441, 569, 789, 1491
MboI GATC 8 cut(s) 41, 181, 211, 272, 439, 567, 787, 1489
MboII GAAGA 9 cut(s) 21, 422, 457, 482, 485, 571, 1195, 1631, 1790
MflI RGATCY 4 cut(s) 41, 181, 787, 1489
MlsI TGGCCA 2 cut(s) 1583, 1718
MluNI TGGCCA 2 cut(s) 1583, 1718
MmeI TCCRAC 1 cut(s) 1401
MnlI CCTC 9 cut(s) 358, 533, 625, 637, 1147, 1157, 1179, 1604, 1774
Mox20I TGGCCA 2 cut(s) 1583, 1718
MroXI GAANNNNTTC 3 cut(s) 578, 809, 1623
MscI TGGCCA 2 cut(s) 1583, 1718
MseI TTAA 7 cut(s) 203, 663, 858, 906, 933, 1398, 1464
MslI CAYNNNNRTG 1 cut(s) 1217
Msp20I TGGCCA 2 cut(s) 1583, 1718
MspCI CTTAAG 1 cut(s) 932
MspI CCGG 2 cut(s) 622, 1842
MspR9I CCNGG 3 cut(s) 35, 1205, 1842
Mva1269I GAATGC 1 cut(s) 652
MvaI CCWGG 2 cut(s) 35, 1205
MvnI CGCG 1 cut(s) 1832
MwoI GCNNNNNNNGC 1 cut(s) 86
NciI CCSGG 1 cut(s) 1842
NdeI CATATG 2 cut(s) 534, 1042
NdeII GATC 8 cut(s) 41, 181, 211, 272, 439, 567, 787, 1489
NlaIII CATG 7 cut(s) 382, 574, 694, 1372, 1507, 1559, 1717
NlaIV GGNNCC 1 cut(s) 892
NmuCI GTSAC 3 cut(s) 701, 1450, 1604
NspI RCATGY 1 cut(s) 1507
NspV TTCGAA 3 cut(s) 640, 963, 1480
PaeI GCATGC 1 cut(s) 1507
PagI TCATGA 1 cut(s) 570
PciSI GCTCTTC 2 cut(s) 495, 1614
PcsI WCGNNNNNNNCGW 1 cut(s) 1807
PctI GAATGC 1 cut(s) 652
PdmI GAANNNNTTC 3 cut(s) 578, 809, 1623
PfeI GAWTC 5 cut(s) 398, 926, 1024, 1066, 1569
PinAI ACCGGT 1 cut(s) 621
PkrI GCNGC 1 cut(s) 370
Psp6I CCWGG 2 cut(s) 33, 1203
PspFI CCCAGC 1 cut(s) 1559
PspGI CCWGG 2 cut(s) 33, 1203
PspN4I GGNNCC 1 cut(s) 892
PspPI GGNCC 2 cut(s) 624, 1533
PsuI RGATCY 4 cut(s) 41, 181, 787, 1489
RsaI GTAC 4 cut(s) 1039, 1197, 1710, 1769
RsaNI GTAC 4 cut(s) 1038, 1196, 1709, 1768
RseI CAYNNNNRTG 1 cut(s) 1217
SapI GCTCTTC 2 cut(s) 495, 1614
SaqAI TTAA 7 cut(s) 203, 663, 858, 906, 933, 1398, 1464
SatI GCNGC 1 cut(s) 369
Sau3AI GATC 8 cut(s) 41, 181, 211, 272, 439, 567, 787, 1489
Sau96I GGNCC 2 cut(s) 624, 1533
ScrFI CCNGG 3 cut(s) 35, 1205, 1842
SfaNI GCATC 6 cut(s) 76, 93, 1209, 1209, 1646, 1736
SfuI TTCGAA 3 cut(s) 640, 963, 1480
SinI GGWCC 2 cut(s) 624, 1533
SmiMI CAYNNNNRTG 1 cut(s) 1217
SmlI CTYRAG 1 cut(s) 932
SmoI CTYRAG 1 cut(s) 932
SphI GCATGC 1 cut(s) 1507
SsiI CCGC 3 cut(s) 136, 1167, 1830
SspI AATATT 1 cut(s) 918
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 3 cut(s) 33, 1203, 1840
StyI CCWWGG 3 cut(s) 602, 1080, 1719
TaiI ACGT 5 cut(s) 324, 826, 1119, 1544, 1829
TatI WGTACW 3 cut(s) 1037, 1708, 1767
TfiI GAWTC 5 cut(s) 398, 926, 1024, 1066, 1569
Tru1I TTAA 7 cut(s) 203, 663, 858, 906, 933, 1398, 1464
Tru9I TTAA 7 cut(s) 203, 663, 858, 906, 933, 1398, 1464
TscAI CASTG 3 cut(s) 62, 122, 1455
TseFI GTSAC 3 cut(s) 701, 1450, 1604
TseI GCWGC 1 cut(s) 368
Tsp45I GTSAC 3 cut(s) 701, 1450, 1604
TspDTI ATGAA 5 cut(s) 571, 587, 818, 1357, 1501
TspGWI ACGGA 2 cut(s) 296, 1799
TspRI CASTG 3 cut(s) 62, 122, 1455
Vha464I CTTAAG 1 cut(s) 932
VpaK11BI GGWCC 2 cut(s) 624, 1533
XagI CCTNNNNNAGG 1 cut(s) 95
XapI RAATTY 6 cut(s) 315, 349, 385, 615, 654, 1232
XceI RCATGY 1 cut(s) 1507
XmiI GTMKAC 1 cut(s) 1209
XmnI GAANNNNTTC 3 cut(s) 578, 809, 1623
XspI CTAG 1 cut(s) 6
ZraI GACGTC 1 cut(s) 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.