Rw1G005300

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000119
Physical Location & Seq
Forward (+)
10263339 .. 10267486
4148 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G005300.1

Sequence Viewer

Length: 1890 bp
ATGATAAATTACATTATTGAAGGGTTCTTTATCAGCACAACACGAGGTACGAACTATGATTTCGAAAGTGTTGAGGAGCAAGGGCGAGATGGTTCATCGAAAACTGTTGATGCACTTTCAACCAAGAAAAAATTGAAAATTGCACTTCTTTCCGTTTCATTGTGGAACAAGCTATTCCTAGTCGCATGTGTGATTGCAGTCTCATTAGACCCCTTGTTCTTTTACATTCCAGTCATCAATGAAGATGAAAAGTGTCTTGGAATAGACAAAGAGTTGAGGACCATAGCTCTCATTTTGCGATCCCTCAGTGATATCATTTTCATAGTGCATATTGTGTATCAAATTTGTGAAGCTACTATGGCGGCCTACAAAGTACACATAAAAGGAAAGTCGGAATTGGAATTGGATTGGTCATATTCGAAGATATCAATGGGTGAGATAATTCCATTTGCTAAATTAGTTGCTGGGAAGCTAGCATGGCGCTCCACGCTAGCTGATATTTTGGCTGTTCTTCCCATACCACAATTTCTACTGGTCTTTGGTTTCTCCAAAATGAGAGGCCGTGGATATTTGGAACGCAAGAAGATTCTCAATGTCTTTCTCCTGGGTCAATATCTGCCAAGGATTTATCGAATTTACTTGTCATCCAAGGAACTTAGACAAACTACAGGAATTTGGGTTAAGGCTCTGTTCAACTTTTTTCTGTATATACTAGCCAGTCATGTCATTGGAGCCTTTTGGTACTTCTTTTCTATTCAACGTGAGACATCATGCTGGCATCATGCTTGTATAAAGAATAGTACAAATGTCGAAGGATGTATGAGTACTTTCTACTGTGATGGTCACAATACTACCGCTAGAAATGTCACTTTTTTCAATCAGTTTTGCCACATCAATGTTGAAGACAATGCTACAGCGCTTTTTGATTTTGGAATATTTCTTAATTCTCTCAAGAATGGTAACACGGGCCATATACATTTTGCAACAAAGTTGTCCTACTCATTTTGGTGGGGATTGCGGAATCTGAGCAATTTTGGCACAAGTCTCGAAACAAGTACCTATGTGTGGGAAAGTTGCTTTGCAGTATTTATTTGTGTCATTGGCTTGCTACTGTTTCTATATCTGATTGGAAATGTTCAGACGTTTATGTCCATGGAAGCTCAAAGATGGGAGGTTATAAGAAACAAGATGCTTTTGAAAGAGAAAGATATAGAAAGATGGATGGACAGGAATGAACTGCCCGATGATATGAAGAAAGAAATCAAGAAAAACATAACGCAAAAATTGGAAGAAAACAAAGATTCAGATCTGGAGAACCTTTTCAATATTCTTCCCTGGTACACCAAAAAGTACCTAAAGCGAGTTCTGTGCATGGACATACTAAAGAAAGTACCTAAACTGGAAAGAATGGATGAGAAAGTGTTGAAAATGATCTGCGACTATCTAAAGCCAGAGATGTATGCTGAGGGCACCATGGTTTTTCACATGGGAGAACCGCTTGATAGCATGCTATTCATTACAGAAGGCACTATACTGACCTACAAAACTACCGGTACTGATAATCATGCTCATGAAAACGCAAAATTGGGTCCTCCTGCATCCCCATCAATCGGCACCCTTGAGAAAGGCTACTTCTATGGCGAACAACTGCTGCACTGGGCATCACAAAAAAACGTGAATTTAACGGAGGTCCCTAGCTCTGCCGACAATGTGAAGTGCCATACAAAAGTAGAAGGCTTTGTTCTCATGGCCAAGGACTTGAGAACTGTAGTCTCCAAATGTGAGTACTGGTGGAAATTAAGCATTAGTAATCCTAGATTGGGTGGTACTCGGACCACACCAAATGCTAGGAATGTGCAGCAGAAACCTGGAGTGGATCCCCAGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

629

Amino Acids

72.4

Weight (kDa)

8.69

Isoelectric Point (pI)

38.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 55 - 388 1.8e-08 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1178
AasI GACNNNNNNGTC 1 cut(s) 1147
AccB1I GGYRCC 2 cut(s) 1469, 1613
AciI CCGC 4 cut(s) 362, 855, 1018, 1496
AclWI GGATC 3 cut(s) 294, 1871, 1884
AcoI YGGCCR 1 cut(s) 1749
AcsI RAATTY 4 cut(s) 342, 633, 672, 1678
AfeI AGCGCT 1 cut(s) 918
AfiI CCNNNNNNNGG 3 cut(s) 1065, 1610, 1820
AgeI ACCGGT 1 cut(s) 1550
AjnI CCWGG 3 cut(s) 603, 1334, 1867
AjuI GAANNNNNNNTTGG 2 cut(s) 240, 272
AluBI AGCT 7 cut(s) 172, 287, 353, 472, 494, 1160, 1698
AluI AGCT 7 cut(s) 172, 287, 353, 472, 494, 1160, 1698
Alw26I GTCTC 4 cut(s) 205, 758, 1049, 1777
AlwI GGATC 3 cut(s) 294, 1871, 1884
Aor51HI AGCGCT 1 cut(s) 918
AoxI GGCC 4 cut(s) 363, 559, 967, 1749
ApeKI GCWGC 2 cut(s) 1651, 1858
ApoI RAATTY 4 cut(s) 342, 633, 672, 1678
AsiGI ACCGGT 1 cut(s) 1550
Asp700I GAANNNNTTC 1 cut(s) 1319
AspLEI GCGC 2 cut(s) 483, 919
AspS9I GGNCC 5 cut(s) 279, 967, 1589, 1690, 1833
AsuHPI GGTGA 1 cut(s) 446
AsuII TTCGAA 2 cut(s) 63, 419
AsuNHI GCTAGC 2 cut(s) 472, 490
AvaII GGWCC 4 cut(s) 279, 1589, 1690, 1833
BaeGI GKGCMC 1 cut(s) 1472
BalI TGGCCA 1 cut(s) 1751
BamHI GGATCC 1 cut(s) 1876
BanI GGYRCC 2 cut(s) 1469, 1613
BarI GAAGNNNNNNTAC 2 cut(s) 1515, 1547
BauI CACGAG 1 cut(s) 42
BbsI GAAGAC 1 cut(s) 909
BbvCI CCTCAGC 1 cut(s) 1464
BbvI GCAGC 2 cut(s) 1638, 1870
BccI CCATC 6 cut(s) 83, 833, 1161, 1212, 1216, 1612
BceAI ACGGC 1 cut(s) 546
BcgI CGANNNNNNTGC 4 cut(s) 1027, 1061, 1350, 1384
BciT130I CCWGG 3 cut(s) 605, 1336, 1869
BcoDI GTCTC 4 cut(s) 205, 758, 1049, 1777
BfaI CTAG 9 cut(s) 179, 473, 491, 713, 858, 1695, 1815, 1848, 1888
BfmI CTRYAG 3 cut(s) 666, 912, 1767
BfoI RGCGCY 2 cut(s) 484, 920
BglII AGATCT 1 cut(s) 1306
BisI GCNGC 3 cut(s) 363, 1652, 1859
BlsI GCNGC 3 cut(s) 364, 1653, 1860
BmcAI AGTACT 3 cut(s) 826, 1787, 1886
Bme1390I CCNGG 3 cut(s) 605, 1336, 1869
Bme18I GGWCC 4 cut(s) 279, 1589, 1690, 1833
BmgT120I GGNCC 5 cut(s) 279, 967, 1589, 1690, 1833
BmiI GGNNCC 6 cut(s) 733, 1471, 1590, 1615, 1692, 1878
BmrFI CCNGG 3 cut(s) 605, 1336, 1869
BmrI ACTGGG 2 cut(s) 1666, 1876
BmsI GCATC 5 cut(s) 100, 787, 1179, 1607, 1670
BmtI GCTAGC 2 cut(s) 476, 494
BmuI ACTGGG 2 cut(s) 1666, 1876
BpiI GAAGAC 1 cut(s) 909
BpmI CTGGAG 2 cut(s) 1331, 1890
Bpu10I CCTNAGC 1 cut(s) 1464
Bpu14I TTCGAA 2 cut(s) 63, 419
BpuEI CTTGAG 3 cut(s) 935, 1640, 1780
BsaBI GATNNNNATC 1 cut(s) 1305
BsaJI CCNNGG 8 cut(s) 562, 604, 620, 648, 1152, 1334, 1473, 1752
BsaWI WCCGGW 1 cut(s) 1550
Bsc4I CCNNNNNNNGG 3 cut(s) 1065, 1610, 1820
Bse118I RCCGGY 1 cut(s) 1550
Bse1I ACTGG 7 cut(s) 230, 537, 717, 1404, 1661, 1793, 1882
Bse8I GATNNNNATC 1 cut(s) 1305
BseBI CCWGG 3 cut(s) 605, 1336, 1869
BseDI CCNNGG 8 cut(s) 562, 604, 620, 648, 1152, 1334, 1473, 1752
BseGI GGATG 5 cut(s) 644, 821, 1227, 1417, 1598
BseJI GATNNNNATC 1 cut(s) 1305
BseLI CCNNNNNNNGG 3 cut(s) 1065, 1610, 1820
BseMII CTCAG 3 cut(s) 319, 1016, 1455
BseNI ACTGG 7 cut(s) 230, 537, 717, 1404, 1661, 1793, 1882
BseRI GAGGAG 1 cut(s) 89
BseSI GKGCMC 1 cut(s) 1472
BseXI GCAGC 2 cut(s) 1638, 1870
BseYI CCCAGC 1 cut(s) 464
BsgI GTGCAG 2 cut(s) 1637, 1877
BshFI GGCC 4 cut(s) 365, 561, 969, 1751
BshNI GGYRCC 2 cut(s) 1469, 1613
BshTI ACCGGT 1 cut(s) 1550
BsiSI CCGG 1 cut(s) 1551
BslFI GGGAC 1 cut(s) 1676
BslI CCNNNNNNNGG 3 cut(s) 1065, 1610, 1820
BsmAI GTCTC 4 cut(s) 205, 758, 1049, 1777
BsmFI GGGAC 1 cut(s) 1676
BsnI GGCC 4 cut(s) 365, 561, 969, 1751
Bsp119I TTCGAA 2 cut(s) 63, 419
Bsp1286I GDGCHC 1 cut(s) 1472
Bsp143I GATC 4 cut(s) 299, 1306, 1431, 1876
Bsp19I CCATGG 2 cut(s) 1152, 1473
BspACI CCGC 4 cut(s) 362, 855, 1018, 1496
BspANI GGCC 4 cut(s) 365, 561, 969, 1751
BspCNI CTCAG 3 cut(s) 318, 1017, 1456
BspHI TCATGA 1 cut(s) 1570
BspLI GGNNCC 6 cut(s) 733, 1471, 1590, 1615, 1692, 1878
BspOI GCTAGC 2 cut(s) 476, 494
BspPI GGATC 3 cut(s) 294, 1871, 1884
BspT104I TTCGAA 2 cut(s) 63, 419
BspT107I GGYRCC 2 cut(s) 1469, 1613
BsrFI RCCGGY 1 cut(s) 1550
BsrI ACTGG 7 cut(s) 230, 537, 717, 1404, 1661, 1793, 1882
BssAI RCCGGY 1 cut(s) 1550
BssECI CCNNGG 8 cut(s) 562, 604, 620, 648, 1152, 1334, 1473, 1752
BssMI GATC 4 cut(s) 299, 1306, 1431, 1876
BssSI CACGAG 1 cut(s) 42
BssT1I CCWWGG 5 cut(s) 620, 648, 1152, 1473, 1752
Bst2BI CACGAG 1 cut(s) 42
Bst2UI CCWGG 3 cut(s) 605, 1336, 1869
Bst4CI ACNGT 4 cut(s) 106, 836, 1113, 1768
BstBI TTCGAA 2 cut(s) 63, 419
BstC8I GCNNGC 5 cut(s) 474, 492, 776, 1106, 1508
BstDEI CTNAG 4 cut(s) 305, 656, 1025, 1464
BstDSI CCRYGG 3 cut(s) 562, 1152, 1473
BstF5I GGATG 5 cut(s) 644, 821, 1227, 1417, 1598
BstH2I RGCGCY 2 cut(s) 484, 920
BstHHI GCGC 2 cut(s) 483, 919
BstKTI GATC 4 cut(s) 302, 1309, 1434, 1879
BstMAI GTCTC 4 cut(s) 205, 758, 1049, 1777
BstMBI GATC 4 cut(s) 299, 1306, 1431, 1876
BstMWI GCNNNNNNNGC 4 cut(s) 359, 478, 487, 1035
BstNI CCWGG 3 cut(s) 605, 1336, 1869
BstNSI RCATGY 2 cut(s) 189, 1510
BstSCI CCNGG 3 cut(s) 603, 1334, 1867
BstSFI CTRYAG 3 cut(s) 666, 912, 1767
BstSLI GKGCMC 1 cut(s) 1472
BstV1I GCAGC 2 cut(s) 1638, 1870
BstV2I GAAGAC 1 cut(s) 909
BstX2I RGATCY 2 cut(s) 1306, 1876
BstYI RGATCY 2 cut(s) 1306, 1876
BsuRI GGCC 4 cut(s) 365, 561, 969, 1751
BtgI CCRYGG 3 cut(s) 562, 1152, 1473
BtsCI GGATG 5 cut(s) 644, 821, 1227, 1417, 1598
BtsIMutI CAGTG 2 cut(s) 313, 1654
Cac8I GCNNGC 5 cut(s) 474, 492, 776, 1106, 1508
CciI TCATGA 1 cut(s) 1570
CfoI GCGC 2 cut(s) 483, 919
Cfr10I RCCGGY 1 cut(s) 1550
Cfr13I GGNCC 5 cut(s) 279, 967, 1589, 1690, 1833
CspAI ACCGGT 1 cut(s) 1550
DdeI CTNAG 4 cut(s) 305, 656, 1025, 1464
DpnI GATC 4 cut(s) 301, 1308, 1433, 1878
DpnII GATC 4 cut(s) 299, 1306, 1431, 1876
DrdI GACNNNNNNGTC 1 cut(s) 1147
DseDI GACNNNNNNGTC 1 cut(s) 1147
EaeI YGGCCR 1 cut(s) 1749
Eco130I CCWWGG 5 cut(s) 620, 648, 1152, 1473, 1752
Eco32I GATATC 2 cut(s) 313, 426
Eco47I GGWCC 4 cut(s) 279, 1589, 1690, 1833
Eco47III AGCGCT 1 cut(s) 918
EcoO109I RGGNCCY 2 cut(s) 1589, 1690
EcoRII CCWGG 3 cut(s) 603, 1334, 1867
EcoRV GATATC 2 cut(s) 313, 426
EcoT14I CCWWGG 5 cut(s) 620, 648, 1152, 1473, 1752
ErhI CCWWGG 5 cut(s) 620, 648, 1152, 1473, 1752
FaqI GGGAC 1 cut(s) 1676
Fnu4HI GCNGC 3 cut(s) 363, 1652, 1859
FokI GGATG 5 cut(s) 631, 828, 1234, 1424, 1585
Fsp4HI GCNGC 3 cut(s) 363, 1652, 1859
FspBI CTAG 9 cut(s) 179, 473, 491, 713, 858, 1695, 1815, 1848, 1888
GlaI GCGC 2 cut(s) 482, 918
GluI GCNGC 3 cut(s) 363, 1652, 1859
GsaI CCCAGC 1 cut(s) 468
GsuI CTGGAG 2 cut(s) 1331, 1890
HaeII RGCGCY 2 cut(s) 484, 920
HaeIII GGCC 4 cut(s) 365, 561, 969, 1751
HapII CCGG 1 cut(s) 1551
HhaI GCGC 2 cut(s) 483, 919
Hin6I GCGC 2 cut(s) 481, 917
HinP1I GCGC 2 cut(s) 481, 917
HinfI GANTC 3 cut(s) 586, 1021, 1301
HpaII CCGG 1 cut(s) 1551
HphI GGTGA 1 cut(s) 446
Hpy166II GTNNAC 2 cut(s) 376, 1341
Hpy188I TCNGA 6 cut(s) 394, 1026, 1125, 1140, 1306, 1833
Hpy188III TCNNGA 5 cut(s) 952, 1046, 1264, 1310, 1571
Hpy8I GTNNAC 2 cut(s) 376, 1341
HpyAV CCTTC 4 cut(s) 14, 806, 1517, 1727
HpyCH4III ACNGT 4 cut(s) 106, 836, 1113, 1768
HpyCH4IV ACGT 3 cut(s) 760, 1142, 1674
HpyF10VI GCNNNNNNNGC 4 cut(s) 359, 478, 487, 1035
HpyF3I CTNAG 4 cut(s) 305, 656, 1025, 1464
HpySE526I ACGT 3 cut(s) 760, 1142, 1674
HspAI GCGC 2 cut(s) 481, 917
Kzo9I GATC 4 cut(s) 299, 1306, 1431, 1876
LmnI GCTCC 3 cut(s) 76, 488, 731
Lsp1109I GCAGC 2 cut(s) 1638, 1870
LweI GCATC 5 cut(s) 100, 787, 1179, 1607, 1670
MaeI CTAG 9 cut(s) 179, 473, 491, 713, 858, 1695, 1815, 1848, 1888
MaeII ACGT 3 cut(s) 760, 1142, 1674
MaeIII GTNAC 3 cut(s) 842, 865, 959
MalI GATC 4 cut(s) 301, 1308, 1433, 1878
MboI GATC 4 cut(s) 299, 1306, 1431, 1876
MboII GAAGA 8 cut(s) 254, 433, 503, 595, 914, 1264, 1301, 1322
MflI RGATCY 2 cut(s) 1306, 1876
MhlI GDGCHC 1 cut(s) 1472
MlsI TGGCCA 1 cut(s) 1751
MluNI TGGCCA 1 cut(s) 1751
MmeI TCCRAC 1 cut(s) 372
MnlI CCTC 9 cut(s) 38, 67, 270, 314, 551, 1165, 1459, 1602, 1681
Mox20I TGGCCA 1 cut(s) 1751
MroXI GAANNNNTTC 1 cut(s) 1319
MscI TGGCCA 1 cut(s) 1751
MseI TTAA 4 cut(s) 681, 942, 1682, 1799
MslI CAYNNNNRTG 3 cut(s) 894, 1006, 1569
Msp20I TGGCCA 1 cut(s) 1751
MspI CCGG 1 cut(s) 1551
MspR9I CCNGG 3 cut(s) 605, 1336, 1869
MvaI CCWGG 3 cut(s) 605, 1336, 1869
MwoI GCNNNNNNNGC 4 cut(s) 359, 478, 487, 1035
NcoI CCATGG 2 cut(s) 1152, 1473
NdeII GATC 4 cut(s) 299, 1306, 1431, 1876
NheI GCTAGC 2 cut(s) 472, 490
NlaIV GGNNCC 6 cut(s) 733, 1471, 1590, 1615, 1692, 1878
NmuCI GTSAC 2 cut(s) 842, 865
NspI RCATGY 2 cut(s) 189, 1510
NspV TTCGAA 2 cut(s) 63, 419
PaeI GCATGC 1 cut(s) 1510
PagI TCATGA 1 cut(s) 1570
PdmI GAANNNNTTC 1 cut(s) 1319
PfeI GAWTC 3 cut(s) 586, 1021, 1301
PinAI ACCGGT 1 cut(s) 1550
PkrI GCNGC 3 cut(s) 364, 1653, 1860
PpuMI RGGWCCY 2 cut(s) 1589, 1690
PsiI TTATAA 1 cut(s) 1178
Psp5II RGGWCCY 2 cut(s) 1589, 1690
Psp6I CCWGG 3 cut(s) 603, 1334, 1867
PspFI CCCAGC 1 cut(s) 464
PspGI CCWGG 3 cut(s) 603, 1334, 1867
PspN4I GGNNCC 6 cut(s) 733, 1471, 1590, 1615, 1692, 1878
PspPI GGNCC 5 cut(s) 279, 967, 1589, 1690, 1833
PspPPI RGGWCCY 2 cut(s) 1589, 1690
PsuI RGATCY 2 cut(s) 1306, 1876
RseI CAYNNNNRTG 3 cut(s) 894, 1006, 1569
SaqAI TTAA 4 cut(s) 681, 942, 1682, 1799
SatI GCNGC 3 cut(s) 363, 1652, 1859
Sau3AI GATC 4 cut(s) 299, 1306, 1431, 1876
Sau96I GGNCC 5 cut(s) 279, 967, 1589, 1690, 1833
ScaI AGTACT 3 cut(s) 826, 1787, 1886
ScrFI CCNGG 3 cut(s) 605, 1336, 1869
SduI GDGCHC 1 cut(s) 1472
SfaNI GCATC 5 cut(s) 100, 787, 1179, 1607, 1670
SfcI CTRYAG 3 cut(s) 666, 912, 1767
SfuI TTCGAA 2 cut(s) 63, 419
SinI GGWCC 4 cut(s) 279, 1589, 1690, 1833
SmiMI CAYNNNNRTG 3 cut(s) 894, 1006, 1569
SmlI CTYRAG 3 cut(s) 950, 1619, 1759
SmoI CTYRAG 3 cut(s) 950, 1619, 1759
SphI GCATGC 1 cut(s) 1510
SsiI CCGC 4 cut(s) 362, 855, 1018, 1496
SspI AATATT 2 cut(s) 936, 1327
SspMI CTAG 9 cut(s) 179, 473, 491, 713, 858, 1695, 1815, 1848, 1888
StyD4I CCNGG 3 cut(s) 603, 1334, 1867
StyI CCWWGG 5 cut(s) 620, 648, 1152, 1473, 1752
TaaI ACNGT 4 cut(s) 106, 836, 1113, 1768
TaiI ACGT 3 cut(s) 763, 1145, 1677
TaqI TCGA 6 cut(s) 63, 98, 419, 631, 810, 1047
TatI WGTACW 5 cut(s) 373, 800, 824, 1785, 1884
TauI GCSGC 1 cut(s) 365
TfiI GAWTC 3 cut(s) 586, 1021, 1301
Tru1I TTAA 4 cut(s) 681, 942, 1682, 1799
Tru9I TTAA 4 cut(s) 681, 942, 1682, 1799
TscAI CASTG 2 cut(s) 313, 1661
TseFI GTSAC 2 cut(s) 842, 865
TseI GCWGC 2 cut(s) 1651, 1858
Tsp45I GTSAC 2 cut(s) 842, 865
TspDTI ATGAA 9 cut(s) 84, 147, 255, 261, 310, 1248, 1265, 1504, 1587
TspGWI ACGGA 2 cut(s) 142, 1700
TspRI CASTG 2 cut(s) 313, 1661
VpaK11BI GGWCC 4 cut(s) 279, 1589, 1690, 1833
XapI RAATTY 4 cut(s) 342, 633, 672, 1678
XceI RCATGY 2 cut(s) 189, 1510
XmnI GAANNNNTTC 1 cut(s) 1319
XspI CTAG 9 cut(s) 179, 473, 491, 713, 858, 1695, 1815, 1848, 1888
ZrmI AGTACT 3 cut(s) 826, 1787, 1886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.