Rroxscaffold_6G00395900

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000119
Physical Location & Seq
Forward (+)
17033910 .. 17035706
1797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00395900.1

Sequence Viewer

Length: 681 bp
ATGGAAGCTGAAAGATGGGAGGATATAAGAAACAAGATACGATTGAAAGAGAAAGATATAAGAGGATGGATGGACAGACATAAGGTCCCAGAGAATTTGAAGAAAGAAATTGAGAAGAGGATTGAGAAAAAACTGGAAGAGAACGAAGATACTGATCATGAGATTCTTTTCTTTAATATTCCGATGAGGTGTCTTAGGCATTTCCTCGGCAAGAAACTGCTAGAGAAAGTACCGAAGCTTGCAATGATGGATAAAAGAGTGTTGAAAATGATGTGTGACAATCTAAAGCCAGTGATGCATGACGAGGGCACCGAGGTTTTTCAAATGGGAGCTCCACTAGATAGAATGCTACTCATCACAGAAGGCACATTATTGACCTACAAAAGTAACAGTAATGATTGCCATGTTGCAACTGAAAACACAGTGCGCGACTTTTACGTCCCCGAAGAACTGATCGAGTGGGTAACAGAAAAGAAGGAGCTATGCCAGCTTCCCTGCTCTTCCTTCAATGTGAAATGCAGTTCGAAAGTAGAAGGCTTTGAACTCATGGCCAAGGACTTGAGAAGTGTAGTTTCCAAAAACGAAAACAGGTGGAAATATAGCATTAGCCAGTCAGACAACAGCATGGCGCAGAAACATGGAGTGAATCCCAGTACTAGCAGAGACCTGGAGCACGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

226

Amino Acids

26.6

Weight (kDa)

6.68

Isoelectric Point (pI)

54.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 437
AccB1I GGYRCC 1 cut(s) 308
AccII CGCG 1 cut(s) 429
AcoI YGGCCR 1 cut(s) 549
AcsI RAATTY 1 cut(s) 94
AfaI GTAC 2 cut(s) 231, 655
AgsI TTSAA 6 cut(s) 46, 100, 265, 323, 508, 542
AhdI GACNNNNNGTC 1 cut(s) 83
AjnI CCWGG 1 cut(s) 666
AluBI AGCT 5 cut(s) 8, 238, 332, 481, 490
AluI AGCT 5 cut(s) 8, 238, 332, 481, 490
Alw21I GWGCWC 2 cut(s) 334, 675
Alw26I GTCTC 1 cut(s) 657
AoxI GGCC 1 cut(s) 549
ApoI RAATTY 1 cut(s) 94
AspLEI GCGC 2 cut(s) 429, 631
AspS9I GGNCC 1 cut(s) 85
AsuII TTCGAA 1 cut(s) 524
AvaII GGWCC 1 cut(s) 85
BaeGI GKGCMC 1 cut(s) 311
BalI TGGCCA 1 cut(s) 551
BanI GGYRCC 1 cut(s) 308
BanII GRGCYC 1 cut(s) 334
Bbv12I GWGCWC 2 cut(s) 334, 675
BccI CCATC 4 cut(s) 9, 60, 64, 241
BciT130I CCWGG 1 cut(s) 668
BclI TGATCA 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 657
BfaI CTAG 3 cut(s) 221, 338, 657
BmcAI AGTACT 1 cut(s) 655
Bme1390I CCNGG 1 cut(s) 668
Bme18I GGWCC 1 cut(s) 85
BmeRI GACNNNNNGTC 1 cut(s) 83
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 2 cut(s) 87, 310
BmrFI CCNGG 1 cut(s) 668
BmrI ACTGGG 1 cut(s) 645
BmsI GCATC 1 cut(s) 285
BmuI ACTGGG 1 cut(s) 645
Bpu14I TTCGAA 1 cut(s) 524
BpuEI CTTGAG 1 cut(s) 580
BsaBI GATNNNNATC 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 657
BsaJI CCNNGG 3 cut(s) 205, 312, 552
Bse1I ACTGG 4 cut(s) 138, 290, 610, 651
Bse3DI GCAATG 1 cut(s) 249
Bse8I GATNNNNATC 1 cut(s) 153
BseBI CCWGG 1 cut(s) 668
BseDI CCNNGG 3 cut(s) 205, 312, 552
BseGI GGATG 2 cut(s) 71, 75
BseJI GATNNNNATC 1 cut(s) 153
BseMI GCAATG 1 cut(s) 249
BseNI ACTGG 4 cut(s) 138, 290, 610, 651
BseSI GKGCMC 1 cut(s) 311
Bsh1236I CGCG 1 cut(s) 429
BshFI GGCC 1 cut(s) 551
BshNI GGYRCC 1 cut(s) 308
BsiHKAI GWGCWC 2 cut(s) 334, 675
BslFI GGGAC 2 cut(s) 71, 425
BsmAI GTCTC 1 cut(s) 657
BsmFI GGGAC 2 cut(s) 71, 425
BsmI GAATGC 1 cut(s) 351
BsnI GGCC 1 cut(s) 551
Bso31I GGTCTC 1 cut(s) 657
Bsp119I TTCGAA 1 cut(s) 524
Bsp1286I GDGCHC 3 cut(s) 311, 334, 675
Bsp143I GATC 2 cut(s) 154, 453
BspANI GGCC 1 cut(s) 551
BspFNI CGCG 1 cut(s) 429
BspHI TCATGA 1 cut(s) 157
BspLI GGNNCC 2 cut(s) 87, 310
BspQI GCTCTTC 1 cut(s) 505
BspT104I TTCGAA 1 cut(s) 524
BspT107I GGYRCC 1 cut(s) 308
BspTNI GGTCTC 1 cut(s) 657
BsrDI GCAATG 1 cut(s) 249
BsrI ACTGG 4 cut(s) 138, 290, 610, 651
BssECI CCNNGG 3 cut(s) 205, 312, 552
BssMI GATC 2 cut(s) 154, 453
BssT1I CCWWGG 1 cut(s) 552
Bst2UI CCWGG 1 cut(s) 668
Bst4CI ACNGT 2 cut(s) 392, 424
Bst6I CTCTTC 3 cut(s) 110, 132, 505
BstBI TTCGAA 1 cut(s) 524
BstC8I GCNNGC 3 cut(s) 240, 488, 675
BstDEI CTNAG 1 cut(s) 194
BstF5I GGATG 2 cut(s) 71, 75
BstFNI CGCG 1 cut(s) 429
BstHHI GCGC 2 cut(s) 429, 631
BstKTI GATC 2 cut(s) 157, 456
BstMAI GTCTC 1 cut(s) 657
BstMBI GATC 2 cut(s) 154, 453
BstMWI GCNNNNNNNGC 2 cut(s) 295, 487
BstNI CCWGG 1 cut(s) 668
BstSCI CCNGG 1 cut(s) 666
BstSLI GKGCMC 1 cut(s) 311
BstUI CGCG 1 cut(s) 429
BsuRI GGCC 1 cut(s) 551
BtsCI GGATG 2 cut(s) 71, 75
BtsIMutI CAGTG 2 cut(s) 297, 429
Cac8I GCNNGC 3 cut(s) 240, 488, 675
CciI TCATGA 1 cut(s) 157
CfoI GCGC 2 cut(s) 429, 631
Cfr13I GGNCC 1 cut(s) 85
Csp6I GTAC 2 cut(s) 230, 654
CviAII CATG 6 cut(s) 158, 299, 404, 547, 625, 638
CviJI RGCY 9 cut(s) 8, 238, 289, 332, 481, 490, 537, 551, 609
CviKI_1 RGCY 9 cut(s) 8, 238, 289, 332, 481, 490, 537, 551, 609
CviQI GTAC 2 cut(s) 230, 654
DdeI CTNAG 1 cut(s) 194
DpnI GATC 2 cut(s) 156, 455
DpnII GATC 2 cut(s) 154, 453
DrdI GACNNNNNNGTC 1 cut(s) 437
DriI GACNNNNNGTC 1 cut(s) 83
DseDI GACNNNNNNGTC 1 cut(s) 437
EaeI YGGCCR 1 cut(s) 549
Eam1104I CTCTTC 3 cut(s) 110, 132, 505
Eam1105I GACNNNNNGTC 1 cut(s) 83
EarI CTCTTC 3 cut(s) 110, 132, 505
Ecl136II GAGCTC 1 cut(s) 332
Eco130I CCWWGG 1 cut(s) 552
Eco24I GRGCYC 1 cut(s) 334
Eco31I GGTCTC 1 cut(s) 657
Eco47I GGWCC 1 cut(s) 85
Eco53kI GAGCTC 1 cut(s) 332
EcoICRI GAGCTC 1 cut(s) 332
EcoO109I RGGNCCY 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 666
EcoT14I CCWWGG 1 cut(s) 552
EcoT22I ATGCAT 1 cut(s) 300
EcoT38I GRGCYC 1 cut(s) 334
ErhI CCWWGG 1 cut(s) 552
FaeI CATG 6 cut(s) 161, 302, 407, 550, 628, 641
FaqI GGGAC 2 cut(s) 71, 425
FatI CATG 6 cut(s) 157, 298, 403, 546, 624, 637
FbaI TGATCA 1 cut(s) 154
FokI GGATG 2 cut(s) 78, 82
FriOI GRGCYC 1 cut(s) 334
FspBI CTAG 3 cut(s) 221, 338, 657
GlaI GCGC 2 cut(s) 428, 630
HaeIII GGCC 1 cut(s) 551
HhaI GCGC 2 cut(s) 429, 631
Hin1II CATG 6 cut(s) 161, 302, 407, 550, 628, 641
Hin6I GCGC 2 cut(s) 427, 629
HinP1I GCGC 2 cut(s) 427, 629
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 2 cut(s) 163, 646
Hpy188I TCNGA 2 cut(s) 183, 616
Hpy188III TCNNGA 1 cut(s) 158
HpyAV CCTTC 4 cut(s) 356, 469, 514, 527
HpyCH4III ACNGT 2 cut(s) 392, 424
HpyCH4IV ACGT 1 cut(s) 438
HpyCH4V TGCA 4 cut(s) 242, 298, 410, 519
HpyF10VI GCNNNNNNNGC 2 cut(s) 295, 487
HpyF3I CTNAG 1 cut(s) 194
HpySE526I ACGT 1 cut(s) 438
Hsp92II CATG 6 cut(s) 161, 302, 407, 550, 628, 641
HspAI GCGC 2 cut(s) 427, 629
Ksp22I TGATCA 1 cut(s) 154
Kzo9I GATC 2 cut(s) 154, 453
LguI GCTCTTC 1 cut(s) 505
LmnI GCTCC 4 cut(s) 329, 337, 478, 670
LpnPI CCDG 9 cut(s) 102, 119, 303, 500, 508, 574, 623, 653, 664
LweI GCATC 1 cut(s) 285
MaeI CTAG 3 cut(s) 221, 338, 657
MaeII ACGT 1 cut(s) 438
MaeIII GTNAC 3 cut(s) 275, 386, 463
MalI GATC 2 cut(s) 156, 455
MboI GATC 2 cut(s) 154, 453
MboII GAAGA 6 cut(s) 112, 127, 149, 158, 458, 492
MhlI GDGCHC 3 cut(s) 311, 334, 675
MlsI TGGCCA 1 cut(s) 551
MluCI AATT 2 cut(s) 94, 108
MluNI TGGCCA 1 cut(s) 551
MnlI CCTC 7 cut(s) 13, 56, 111, 180, 215, 298, 307
Mox20I TGGCCA 1 cut(s) 551
Mph1103I ATGCAT 1 cut(s) 300
MscI TGGCCA 1 cut(s) 551
MseI TTAA 2 cut(s) 174, 679
Msp20I TGGCCA 1 cut(s) 551
MspR9I CCNGG 1 cut(s) 668
Mva1269I GAATGC 1 cut(s) 351
MvaI CCWGG 1 cut(s) 668
MvnI CGCG 1 cut(s) 429
MwoI GCNNNNNNNGC 2 cut(s) 295, 487
NdeII GATC 2 cut(s) 154, 453
NlaIII CATG 6 cut(s) 161, 302, 407, 550, 628, 641
NlaIV GGNNCC 2 cut(s) 87, 310
NmeAIII GCCGAG 1 cut(s) 186
NmuCI GTSAC 1 cut(s) 275
NsiI ATGCAT 1 cut(s) 300
NspV TTCGAA 1 cut(s) 524
PagI TCATGA 1 cut(s) 157
PciSI GCTCTTC 1 cut(s) 505
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PctI GAATGC 1 cut(s) 351
PfeI GAWTC 2 cut(s) 163, 646
PpuMI RGGWCCY 1 cut(s) 85
Psp124BI GAGCTC 1 cut(s) 334
Psp5II RGGWCCY 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 666
PspGI CCWGG 1 cut(s) 666
PspN4I GGNNCC 2 cut(s) 87, 310
PspPI GGNCC 1 cut(s) 85
PspPPI RGGWCCY 1 cut(s) 85
RsaI GTAC 2 cut(s) 231, 655
RsaNI GTAC 2 cut(s) 230, 654
SacI GAGCTC 1 cut(s) 334
SapI GCTCTTC 1 cut(s) 505
SaqAI TTAA 2 cut(s) 174, 679
Sau3AI GATC 2 cut(s) 154, 453
Sau96I GGNCC 1 cut(s) 85
ScaI AGTACT 1 cut(s) 655
ScrFI CCNGG 1 cut(s) 668
SduI GDGCHC 3 cut(s) 311, 334, 675
SfaNI GCATC 1 cut(s) 285
SfuI TTCGAA 1 cut(s) 524
SinI GGWCC 1 cut(s) 85
SmlI CTYRAG 1 cut(s) 559
SmoI CTYRAG 1 cut(s) 559
Sse9I AATT 2 cut(s) 94, 108
SspI AATATT 1 cut(s) 178
SspMI CTAG 3 cut(s) 221, 338, 657
SstI GAGCTC 1 cut(s) 334
StyD4I CCNGG 1 cut(s) 666
StyI CCWWGG 1 cut(s) 552
TaaI ACNGT 2 cut(s) 392, 424
TaiI ACGT 1 cut(s) 441
TaqI TCGA 2 cut(s) 456, 524
TasI AATT 2 cut(s) 94, 108
TatI WGTACW 1 cut(s) 653
TfiI GAWTC 2 cut(s) 163, 646
Tru1I TTAA 2 cut(s) 174, 679
Tru9I TTAA 2 cut(s) 174, 679
TscAI CASTG 2 cut(s) 297, 429
TseFI GTSAC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 275
TspRI CASTG 2 cut(s) 297, 429
VpaK11BI GGWCC 1 cut(s) 85
XapI RAATTY 1 cut(s) 94
XspI CTAG 3 cut(s) 221, 338, 657
ZrmI AGTACT 1 cut(s) 655
Zsp2I ATGCAT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.