RchiOBHm_Chr1g0381061

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000119
Physical Location & Seq
Reverse (-)
66456242 .. 66457435
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60426

Sequence Viewer

Length: 978 bp
ATGAACAGTGGAGGACATTCAATATTGTCAGAGACAAAATGGCCTACCTTTAAGGAATTTTTTGACCCCCAGGGGGCCTTCATTGCAATGTGGTATAAGATATTTGTGATTTCATGTCTGATTTCAGTAACCGCAGACCCCTTGTTCTTCTACATCCCCTACATCAACAAAGATAAAAAGTGCATTGATGGGGACAAGAGGGTGAGAACTGCAGCTCTAGTCCTCCGATCACTCACCGATATGACTTTCATAATGCATATTATACATGAAATTCGTGTTAGTACCAACACTGTGGTGTCAGAGATATCAAAAAGAGGAAAGCCAGCAGGTTGGCCATGGAAAAAGGCAGAGTTACTTGGCTTTGCCAAGGCAATATCTCAGAAGATGTCCTGGTTATCTATCTCCATCATAATAGACTTCATAGCCATTCTTCCGATCCCACAAGTGGCGCTGTTGGTATTCTTTCTGAAAATGGATGGCTCAGATTACAGAAAGAAGATTTTAAACGGGTTCCTGCTCTTTCAATATATGCCAAAGATTTATAGAATCTACCTTTCGTGTAAAGAACTTAAACAAACCGGAATATGGGCTAGAGGTGCATTCAATATTTTTCTCTACATCCTCGCCAGTCATGTACTTGGAGCCTTTTGGTATTTCCTTTCTGTTCAACGAGAGACATCATGCTGGCATGAGGCTTGTGAACAACATCCTGATACCATAAGATGTATATCAACTTACTACTGTGATGACAGACCTACAGATCCACAATATATTAGTAATATCTCACTCCTGGATGAAAATTGCCCGGTAAATCCATCAGATGCAACACAATTTAATTTCGGAATCTTCCTTAATGCCCTTGAGTCCGGTAGCACGCACTCAACAAAGTTTTCCAAGAAGTTCTTTTACTCTTTCTGGTGGGGTCTGCGAAATCTAAGGTCTGCATATACAGATACATATAAACTGTGTATACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

325

Amino Acids

37.6

Weight (kDa)

9.0

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 31 - 321 3.7e-09 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 317
AccI GTMKAC 1 cut(s) 970
AciI CCGC 1 cut(s) 132
AclWI GGATC 2 cut(s) 430, 755
AcoI YGGCCR 1 cut(s) 332
AcsI RAATTY 2 cut(s) 56, 270
AfaI GTAC 2 cut(s) 283, 636
AfiI CCNNNNNNNGG 3 cut(s) 73, 445, 585
AgsI TTSAA 4 cut(s) 21, 524, 604, 668
AjnI CCWGG 3 cut(s) 69, 389, 789
AleI CACNNNNGTG 1 cut(s) 293
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
Alw26I GTCTC 2 cut(s) 26, 668
AlwI GGATC 2 cut(s) 430, 755
AoxI GGCC 3 cut(s) 41, 75, 332
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 2 cut(s) 56, 270
AspLEI GCGC 1 cut(s) 451
AspS9I GGNCC 1 cut(s) 75
AsuC2I CCSGG 1 cut(s) 806
AsuHPI GGTGA 2 cut(s) 214, 226
BalI TGGCCA 1 cut(s) 334
BarI GAAGNNNNNNTAC 2 cut(s) 890, 922
BbvI GCAGC 1 cut(s) 224
BccI CCATC 4 cut(s) 182, 413, 470, 823
BciT130I CCWGG 3 cut(s) 71, 391, 791
BcnI CCSGG 1 cut(s) 806
BcoDI GTCTC 2 cut(s) 26, 668
BfaI CTAG 2 cut(s) 218, 591
BfmI CTRYAG 2 cut(s) 210, 756
BfoI RGCGCY 1 cut(s) 452
BfuAI ACCTGC 1 cut(s) 317
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
Bme1390I CCNGG 4 cut(s) 71, 391, 791, 806
BmgT120I GGNCC 1 cut(s) 75
BmiI GGNNCC 3 cut(s) 76, 512, 643
BmrFI CCNGG 4 cut(s) 71, 391, 791, 806
BmsI GCATC 1 cut(s) 811
BpuEI CTTGAG 1 cut(s) 881
BpuMI CCSGG 1 cut(s) 806
BsaBI GATNNNNATC 1 cut(s) 727
BsaJI CCNNGG 4 cut(s) 69, 70, 335, 366
BsaWI WCCGGW 2 cut(s) 578, 866
Bsc4I CCNNNNNNNGG 3 cut(s) 73, 445, 585
Bse1I ACTGG 1 cut(s) 627
Bse3DI GCAATG 2 cut(s) 81, 93
Bse8I GATNNNNATC 1 cut(s) 727
BseBI CCWGG 3 cut(s) 71, 391, 791
BseDI CCNNGG 4 cut(s) 69, 70, 335, 366
BseGI GGATG 5 cut(s) 153, 481, 618, 706, 799
BseJI GATNNNNATC 1 cut(s) 727
BseLI CCNNNNNNNGG 3 cut(s) 73, 445, 585
BseMI GCAATG 2 cut(s) 81, 93
BseMII CTCAG 2 cut(s) 392, 495
BseNI ACTGG 1 cut(s) 627
BseXI GCAGC 1 cut(s) 224
BshFI GGCC 3 cut(s) 43, 77, 334
BsiSI CCGG 3 cut(s) 579, 806, 867
BslFI GGGAC 1 cut(s) 206
BslI CCNNNNNNNGG 3 cut(s) 73, 445, 585
BsmAI GTCTC 2 cut(s) 26, 668
BsmFI GGGAC 1 cut(s) 206
BsmI GAATGC 1 cut(s) 599
BsnI GGCC 3 cut(s) 43, 77, 334
Bsp143I GATC 3 cut(s) 227, 435, 760
Bsp19I CCATGG 1 cut(s) 335
BspACI CCGC 1 cut(s) 132
BspANI GGCC 3 cut(s) 43, 77, 334
BspCNI CTCAG 2 cut(s) 391, 494
BspLI GGNNCC 3 cut(s) 76, 512, 643
BspMAI CTGCAG 1 cut(s) 214
BspMI ACCTGC 1 cut(s) 317
BspPI GGATC 2 cut(s) 430, 755
BsrDI GCAATG 2 cut(s) 81, 93
BsrI ACTGG 1 cut(s) 627
BssECI CCNNGG 4 cut(s) 69, 70, 335, 366
BssMI GATC 3 cut(s) 227, 435, 760
BssNAI GTATAC 1 cut(s) 971
BssT1I CCWWGG 2 cut(s) 335, 366
Bst1107I GTATAC 1 cut(s) 971
Bst2UI CCWGG 3 cut(s) 71, 391, 791
Bst4CI ACNGT 5 cut(s) 8, 292, 743, 966, 975
BstC8I GCNNGC 3 cut(s) 324, 686, 875
BstDEI CTNAG 3 cut(s) 378, 481, 935
BstDSI CCRYGG 1 cut(s) 335
BstF5I GGATG 5 cut(s) 153, 481, 618, 706, 799
BstH2I RGCGCY 1 cut(s) 452
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 3 cut(s) 230, 438, 763
BstMAI GTCTC 2 cut(s) 26, 668
BstMBI GATC 3 cut(s) 227, 435, 760
BstMWI GCNNNNNNNGC 2 cut(s) 83, 596
BstNI CCWGG 3 cut(s) 71, 391, 791
BstSCI CCNGG 4 cut(s) 69, 389, 789, 804
BstSFI CTRYAG 2 cut(s) 210, 756
BstV1I GCAGC 1 cut(s) 224
BstX2I RGATCY 1 cut(s) 760
BstXI CCANNNNNNTGG 2 cut(s) 292, 330
BstYI RGATCY 1 cut(s) 760
BstZ17I GTATAC 1 cut(s) 971
BsuRI GGCC 3 cut(s) 43, 77, 334
BtgI CCRYGG 1 cut(s) 335
BtsCI GGATG 5 cut(s) 153, 481, 618, 706, 799
BtsIMutI CAGTG 2 cut(s) 13, 288
BveI ACCTGC 1 cut(s) 317
Cac8I GCNNGC 3 cut(s) 324, 686, 875
CfoI GCGC 1 cut(s) 451
Cfr13I GGNCC 1 cut(s) 75
Csp6I GTAC 2 cut(s) 282, 635
CviAII CATG 6 cut(s) 114, 266, 336, 632, 681, 689
CviQI GTAC 2 cut(s) 282, 635
DdeI CTNAG 3 cut(s) 378, 481, 935
DpnI GATC 3 cut(s) 229, 437, 762
DpnII GATC 3 cut(s) 227, 435, 760
DraI TTTAAA 1 cut(s) 504
EaeI YGGCCR 1 cut(s) 332
Eco130I CCWWGG 2 cut(s) 335, 366
Eco32I GATATC 1 cut(s) 306
EcoO109I RGGNCCY 1 cut(s) 75
EcoRII CCWGG 3 cut(s) 69, 389, 789
EcoRV GATATC 1 cut(s) 306
EcoT14I CCWWGG 2 cut(s) 335, 366
EcoT22I ATGCAT 1 cut(s) 258
ErhI CCWWGG 2 cut(s) 335, 366
FaeI CATG 6 cut(s) 117, 269, 339, 635, 684, 692
FalI AAGNNNNNCTT 2 cut(s) 887, 919
FaqI GGGAC 1 cut(s) 206
FatI CATG 6 cut(s) 113, 265, 335, 631, 680, 688
FblI GTMKAC 1 cut(s) 970
Fnu4HI GCNGC 1 cut(s) 213
FokI GGATG 5 cut(s) 140, 488, 605, 693, 806
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 2 cut(s) 218, 591
GlaI GCGC 1 cut(s) 450
GluI GCNGC 1 cut(s) 213
HaeII RGCGCY 1 cut(s) 452
HaeIII GGCC 3 cut(s) 43, 77, 334
HapII CCGG 3 cut(s) 579, 806, 867
HhaI GCGC 1 cut(s) 451
Hin1II CATG 6 cut(s) 117, 269, 339, 635, 684, 692
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HinfI GANTC 3 cut(s) 546, 843, 863
HpaII CCGG 3 cut(s) 579, 806, 867
HphI GGTGA 2 cut(s) 214, 226
Hpy166II GTNNAC 2 cut(s) 701, 971
Hpy188III TCNNGA 1 cut(s) 710
Hpy8I GTNNAC 2 cut(s) 701, 971
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 5 cut(s) 8, 292, 743, 966, 975
HpyCH4V TGCA 7 cut(s) 86, 183, 212, 256, 599, 824, 944
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 596
HpyF3I CTNAG 3 cut(s) 378, 481, 935
Hsp92II CATG 6 cut(s) 117, 269, 339, 635, 684, 692
HspAI GCGC 1 cut(s) 449
Kzo9I GATC 3 cut(s) 227, 435, 760
LmnI GCTCC 1 cut(s) 641
Lsp1109I GCAGC 1 cut(s) 224
LweI GCATC 1 cut(s) 811
MaeI CTAG 2 cut(s) 218, 591
MaeIII GTNAC 2 cut(s) 127, 351
MalI GATC 3 cut(s) 229, 437, 762
MboI GATC 3 cut(s) 227, 435, 760
MboII GAAGA 5 cut(s) 139, 394, 422, 508, 838
MflI RGATCY 1 cut(s) 760
MlsI TGGCCA 1 cut(s) 334
MluCI AATT 5 cut(s) 56, 270, 799, 830, 835
MluNI TGGCCA 1 cut(s) 334
MlyI GAGTC 1 cut(s) 872
MnlI CCTC 7 cut(s) 5, 192, 233, 308, 587, 632, 685
Mox20I TGGCCA 1 cut(s) 334
Mph1103I ATGCAT 1 cut(s) 258
MscI TGGCCA 1 cut(s) 334
MseI TTAA 5 cut(s) 51, 503, 570, 834, 852
MslI CAYNNNNRTG 3 cut(s) 86, 239, 293
Msp20I TGGCCA 1 cut(s) 334
MspI CCGG 3 cut(s) 579, 806, 867
MspR9I CCNGG 4 cut(s) 71, 391, 791, 806
Mva1269I GAATGC 1 cut(s) 599
MvaI CCWGG 3 cut(s) 71, 391, 791
MwoI GCNNNNNNNGC 2 cut(s) 83, 596
NciI CCSGG 1 cut(s) 806
NcoI CCATGG 1 cut(s) 335
NdeII GATC 3 cut(s) 227, 435, 760
NlaIII CATG 6 cut(s) 117, 269, 339, 635, 684, 692
NlaIV GGNNCC 3 cut(s) 76, 512, 643
NsiI ATGCAT 1 cut(s) 258
OliI CACNNNNGTG 1 cut(s) 293
PasI CCCWGGG 1 cut(s) 70
PctI GAATGC 1 cut(s) 599
PfeI GAWTC 2 cut(s) 546, 843
PfoI TCCNGGA 1 cut(s) 789
PkrI GCNGC 1 cut(s) 214
PleI GAGTC 1 cut(s) 871
PpsI GAGTC 1 cut(s) 871
Psp6I CCWGG 3 cut(s) 69, 389, 789
PspGI CCWGG 3 cut(s) 69, 389, 789
PspN4I GGNNCC 3 cut(s) 76, 512, 643
PspPI GGNCC 1 cut(s) 75
PstI CTGCAG 1 cut(s) 214
PsuI RGATCY 1 cut(s) 760
RsaI GTAC 2 cut(s) 283, 636
RsaNI GTAC 2 cut(s) 282, 635
RseI CAYNNNNRTG 3 cut(s) 86, 239, 293
SaqAI TTAA 5 cut(s) 51, 503, 570, 834, 852
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 3 cut(s) 227, 435, 760
Sau96I GGNCC 1 cut(s) 75
SchI GAGTC 1 cut(s) 872
ScrFI CCNGG 4 cut(s) 71, 391, 791, 806
SetI ASST 7 cut(s) 50, 217, 331, 555, 598, 757, 941
SfaNI GCATC 1 cut(s) 811
SfcI CTRYAG 2 cut(s) 210, 756
SmiMI CAYNNNNRTG 3 cut(s) 86, 239, 293
SmlI CTYRAG 1 cut(s) 860
SmoI CTYRAG 1 cut(s) 860
Sse9I AATT 5 cut(s) 56, 270, 799, 830, 835
SsiI CCGC 1 cut(s) 132
SspI AATATT 2 cut(s) 24, 607
SspMI CTAG 2 cut(s) 218, 591
StyD4I CCNGG 4 cut(s) 69, 389, 789, 804
StyI CCWWGG 2 cut(s) 335, 366
TaaI ACNGT 5 cut(s) 8, 292, 743, 966, 975
TasI AATT 5 cut(s) 56, 270, 799, 830, 835
TatI WGTACW 1 cut(s) 634
TfiI GAWTC 2 cut(s) 546, 843
Tru1I TTAA 5 cut(s) 51, 503, 570, 834, 852
Tru9I TTAA 5 cut(s) 51, 503, 570, 834, 852
TscAI CASTG 2 cut(s) 13, 295
TseI GCWGC 1 cut(s) 212
TspDTI ATGAA 7 cut(s) 17, 70, 102, 238, 282, 409, 810
TspRI CASTG 2 cut(s) 13, 295
XapI RAATTY 2 cut(s) 56, 270
XmiI GTMKAC 1 cut(s) 970
XspI CTAG 2 cut(s) 218, 591
Zsp2I ATGCAT 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.