Rh3AG274400

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000119
Physical Location & Seq
Reverse (-)
31426838 .. 31430591
3754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG274400.1

Sequence Viewer

Length: 1839 bp
ATGTCTAACACGCAGGTACCCAATGACGGCCCTATGATGAGCAACACACGGGGAAGCAAGCACAATGCCGACAATGTTGAGTCACAACCGCGAGATCCCCTGTGGAGAGATCCAGATGCAGTTTCAACAAAACAAAAATTGGGAGAAACACTTCTTTCAGTCTCATTCTGGCATAAGATGTTCGTAATTGCATGTGTGATCGCGGTCTCATTAGACCCGTTGTTCTTCTACATTCCAGTCATCAATGAAGAACGAAAGTGTCTTGCATTAGACATAGAGTTGATGATTATAGCTCTCATTTTGCGATCGCTCACTGATGTCACTTTCGTAGTGAGTATCATATATCATGTTTGCAAAGCCATCAACGATGCGCACAAAGAACACAGACAAAAAAAGTCTGATGAAGTGGCACCGGATTGGGAATTTTCGAAGGTATCAGCAGCGGAGATAATTCCATTTGCTAAATTAGTTGCTGGGAAGCTAGCTTGGCGCTCTACGCTAACCAGCATTTTAGCTGTTTTTCCCATGCCACAACTGCTTCTAATATTTGTCTTCTTCGAAATGAGAGGCCATGGACACTTGCGGCATAGAAAGATTCTGAATTTCTTTGTTCTAGCTCAATATCTGCCGAGGATTTATCGAATTTACCTATCATCTCAGAAACTCAGACAAACTACTGGAATATGGATTAAAGCTCTGTTTAACTTTTTTCTATATATCCTTGCAAGTCATGTCCTTGGAGCTTTTTGGTACTTTTTCTCTATTCAACGAGAAACTTCTTGTTGGCGTCGAGCATGTGTAAAGAATAGTACAGTTGAAGGATGTAAGACTACCTTATATTGCGAGGGTCACAATATTACTGCAAGAAATCCCGCACTCCTTAATCAATTTTGCTCTATAAGTGCTGAAGAGAATGCTACGGCCGCTTTTGATTTTGGAATATTTCTGCATTCCCTCAAAAATAATATCACACGGGATATACCTTTCGGAACGAAGTTATCTTACTCTTTTTGGTGGGGATTACGTAATCTAAGTAATTTTGGCACAAATCTCGAAACAAGCAACTATGTGTGGGAAACTTGCTTTGCAGTTTCTATTTCTGTCATTGGCTTGCTACTATTTATATATCTCATTGGAAATGTACAGACATTCGTGTCCATGGAAGCTGAAAGATGGGAGGATATAAGAAACAAGATACGATTGAAAGAGAAAGATATAAGAGGATGGATGGACAGACATAAGGTCCCAGAGAATTTGAAGAAAGAAATTAAGAAGAGGATTGAGAAAAAACTGGAAGAGAACAAAGATACTGATCATGAGACTCTTTTCTTTAATATTCCGATGAGGTGTCTTAGGCATTTCCTCGGCAAGAAACTGCTAGAGAAAGTACCGAAGCTTGCAATGATGGATAAAAGAGTGTTGAGAATGATGTGTGACAATCTAAAGCCAGTGATGCATGACGAGGGCACCGAGGTTTTTCAAATGGGAGCTCCACTAGATAGAATGCTACTCATCACAGAAGGCACATTATTGACCTACAAAAGTAACAGTAATGATTGTCATGTTGCAACTGAAAACACAGTGCGCGACTTTTACGTCCCCGAAGAACTGATCGAGTGGGTAACAGAAAAGAAGGAGCTACGCCAGCTTCCCTGCTCTTTCTTCAATGTGAAATGCAGTTCGAAAGTAGAAGGCTTTGAACTCATGGCCAAGGACTTGAGAAGTGTAGTTTTCAAAAACGAAAACAGGTGGAAATATAGCATTAGCCAGTCAGACAACAGCATGGCGCAGAAACATGGAGTGAATCCCAGTACTAGCAGAGACCTGGAGCGCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

612

Amino Acids

70.94

Weight (kDa)

8.98

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1153, 1595
Acc16I TGCGCA 1 cut(s) 372
Acc36I ACCTGC 1 cut(s) 4
Acc65I GGTACC 1 cut(s) 16
AccB1I GGYRCC 3 cut(s) 16, 409, 1466
AccII CGCG 4 cut(s) 91, 203, 1587, 1833
AciI CCGC 6 cut(s) 89, 203, 443, 583, 873, 924
AclWI GGATC 2 cut(s) 89, 104
AcoI YGGCCR 2 cut(s) 921, 1707
AcsI RAATTY 4 cut(s) 422, 601, 642, 1252
AcuI CTGAAG 1 cut(s) 927
AcyI GRCGYC 1 cut(s) 787
AfaI GTAC 6 cut(s) 18, 752, 811, 1143, 1389, 1813
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 9 cut(s) 126, 767, 818, 1204, 1258, 1481, 1666, 1700, 1735
AhdI GACNNNNNGTC 1 cut(s) 1241
AjnI CCWGG 1 cut(s) 1824
Alw21I GWGCWC 1 cut(s) 1492
Alw26I GTCTC 4 cut(s) 166, 211, 1313, 1815
AlwI GGATC 2 cut(s) 89, 104
AoxI GGCC 4 cut(s) 28, 568, 921, 1707
ApeKI GCWGC 1 cut(s) 440
ApoI RAATTY 4 cut(s) 422, 601, 642, 1252
AsiSI GCGATCGC 1 cut(s) 308
Asp700I GAANNNNTTC 1 cut(s) 150
Asp718I GGTACC 1 cut(s) 16
AspLEI GCGC 6 cut(s) 373, 492, 1587, 1789, 1833, 1835
AspS9I GGNCC 2 cut(s) 29, 1243
AsuII TTCGAA 3 cut(s) 428, 558, 1682
AsuNHI GCTAGC 1 cut(s) 481
AvaII GGWCC 1 cut(s) 1243
BaeGI GKGCMC 1 cut(s) 1469
BaeI ACNNNNGTAYC 1 cut(s) 33
BalI TGGCCA 1 cut(s) 1709
BanI GGYRCC 3 cut(s) 16, 409, 1466
BanII GRGCYC 1 cut(s) 1492
BarI GAAGNNNNNNTAC 2 cut(s) 986, 1018
BbsI GAAGAC 1 cut(s) 544
Bbv12I GWGCWC 1 cut(s) 1492
BbvI GCAGC 1 cut(s) 452
BccI CCATC 5 cut(s) 368, 1167, 1218, 1222, 1399
BceAI ACGGC 2 cut(s) 43, 936
BcgI CGANNNNNNTGC 2 cut(s) 1033, 1067
BciT130I CCWGG 1 cut(s) 1826
BclI TGATCA 1 cut(s) 1312
BcoDI GTCTC 4 cut(s) 166, 211, 1313, 1815
BfaI CTAG 5 cut(s) 482, 614, 1379, 1496, 1815
BfoI RGCGCY 1 cut(s) 493
BfuAI ACCTGC 1 cut(s) 4
BisI GCNGC 3 cut(s) 441, 584, 924
BlsI GCNGC 3 cut(s) 442, 585, 925
BmcAI AGTACT 1 cut(s) 1813
Bme1390I CCNGG 1 cut(s) 1826
Bme18I GGWCC 1 cut(s) 1243
BmeRI GACNNNNNGTC 1 cut(s) 1241
BmgT120I GGNCC 2 cut(s) 29, 1243
BmiI GGNNCC 4 cut(s) 18, 411, 1245, 1468
BmrFI CCNGG 1 cut(s) 1826
BmrI ACTGGG 1 cut(s) 1803
BmsI GCATC 3 cut(s) 106, 358, 1443
BmtI GCTAGC 1 cut(s) 485
BmuI ACTGGG 1 cut(s) 1803
BpiI GAAGAC 1 cut(s) 544
Bpu14I TTCGAA 3 cut(s) 428, 558, 1682
BpuEI CTTGAG 1 cut(s) 1738
BsaAI YACGTR 1 cut(s) 1025
BsaBI GATNNNNATC 1 cut(s) 1311
BsaHI GRCGYC 1 cut(s) 787
BsaI GGTCTC 2 cut(s) 211, 1815
BsaJI CCNNGG 7 cut(s) 571, 629, 736, 1158, 1363, 1470, 1710
BsaWI WCCGGW 1 cut(s) 412
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse1I ACTGG 6 cut(s) 236, 682, 1296, 1448, 1768, 1809
Bse3DI GCAATG 1 cut(s) 1407
Bse8I GATNNNNATC 1 cut(s) 1311
BseBI CCWGG 1 cut(s) 1826
BseDI CCNNGG 7 cut(s) 571, 629, 736, 1158, 1363, 1470, 1710
BseGI GGATG 3 cut(s) 827, 1229, 1233
BseJI GATNNNNATC 1 cut(s) 1311
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMI GCAATG 1 cut(s) 1407
BseMII CTCAG 2 cut(s) 671, 679
BseNI ACTGG 6 cut(s) 236, 682, 1296, 1448, 1768, 1809
BsePI GCGCGC 1 cut(s) 1831
BseSI GKGCMC 1 cut(s) 1469
BseX3I CGGCCG 1 cut(s) 921
BseXI GCAGC 1 cut(s) 452
BseYI CCCAGC 1 cut(s) 473
Bsh1236I CGCG 4 cut(s) 91, 203, 1587, 1833
Bsh1285I CGRYCG 2 cut(s) 308, 924
BshFI GGCC 4 cut(s) 30, 570, 923, 1709
BshNI GGYRCC 3 cut(s) 16, 409, 1466
BsiEI CGRYCG 2 cut(s) 308, 924
BsiHKAI GWGCWC 1 cut(s) 1492
BsiSI CCGG 1 cut(s) 413
BslFI GGGAC 2 cut(s) 1229, 1583
BslI CCNNNNNNNGG 1 cut(s) 26
BsmAI GTCTC 4 cut(s) 166, 211, 1313, 1815
BsmFI GGGAC 2 cut(s) 1229, 1583
BsmI GAATGC 3 cut(s) 919, 949, 1509
BsnI GGCC 4 cut(s) 30, 570, 923, 1709
Bso31I GGTCTC 2 cut(s) 211, 1815
Bsp119I TTCGAA 3 cut(s) 428, 558, 1682
Bsp1286I GDGCHC 2 cut(s) 1469, 1492
Bsp1407I TGTACA 1 cut(s) 1141
Bsp143I GATC 6 cut(s) 94, 109, 198, 305, 1312, 1611
Bsp19I CCATGG 2 cut(s) 571, 1158
BspACI CCGC 6 cut(s) 89, 203, 443, 583, 873, 924
BspANI GGCC 4 cut(s) 30, 570, 923, 1709
BspCNI CTCAG 2 cut(s) 670, 678
BspFNI CGCG 4 cut(s) 91, 203, 1587, 1833
BspHI TCATGA 1 cut(s) 1315
BspLI GGNNCC 4 cut(s) 18, 411, 1245, 1468
BspMI ACCTGC 1 cut(s) 4
BspOI GCTAGC 1 cut(s) 485
BspPI GGATC 2 cut(s) 89, 104
BspT104I TTCGAA 3 cut(s) 428, 558, 1682
BspT107I GGYRCC 3 cut(s) 16, 409, 1466
BspTNI GGTCTC 2 cut(s) 211, 1815
BsrDI GCAATG 1 cut(s) 1407
BsrGI TGTACA 1 cut(s) 1141
BsrI ACTGG 6 cut(s) 236, 682, 1296, 1448, 1768, 1809
BssECI CCNNGG 7 cut(s) 571, 629, 736, 1158, 1363, 1470, 1710
BssHII GCGCGC 1 cut(s) 1831
BssMI GATC 6 cut(s) 94, 109, 198, 305, 1312, 1611
BssNI GRCGYC 1 cut(s) 787
BssT1I CCWWGG 4 cut(s) 571, 736, 1158, 1710
Bst2UI CCWGG 1 cut(s) 1826
Bst4CI ACNGT 3 cut(s) 814, 1550, 1582
Bst6I CTCTTC 3 cut(s) 903, 1268, 1290
BstACI GRCGYC 1 cut(s) 787
BstAUI TGTACA 1 cut(s) 1141
BstBAI YACGTR 1 cut(s) 1025
BstBI TTCGAA 3 cut(s) 428, 558, 1682
BstC8I GCNNGC 6 cut(s) 59, 483, 1112, 1398, 1646, 1833
BstDEI CTNAG 4 cut(s) 657, 665, 1031, 1352
BstDSI CCRYGG 2 cut(s) 571, 1158
BstF5I GGATG 3 cut(s) 827, 1229, 1233
BstFNI CGCG 4 cut(s) 91, 203, 1587, 1833
BstH2I RGCGCY 1 cut(s) 493
BstHHI GCGC 6 cut(s) 373, 492, 1587, 1789, 1833, 1835
BstKTI GATC 6 cut(s) 97, 112, 201, 308, 1315, 1614
BstMAI GTCTC 4 cut(s) 166, 211, 1313, 1815
BstMBI GATC 6 cut(s) 94, 109, 198, 305, 1312, 1611
BstMCI CGRYCG 2 cut(s) 308, 924
BstMWI GCNNNNNNNGC 6 cut(s) 487, 496, 535, 923, 1453, 1645
BstNI CCWGG 1 cut(s) 1826
BstNSI RCATGY 2 cut(s) 195, 798
BstSCI CCNGG 1 cut(s) 1824
BstSLI GKGCMC 1 cut(s) 1469
BstSNI TACGTA 1 cut(s) 1025
BstUI CGCG 4 cut(s) 91, 203, 1587, 1833
BstV1I GCAGC 1 cut(s) 452
BstV2I GAAGAC 1 cut(s) 544
BstX2I RGATCY 2 cut(s) 94, 109
BstYI RGATCY 2 cut(s) 94, 109
BstZI CGGCCG 1 cut(s) 921
BsuRI GGCC 4 cut(s) 30, 570, 923, 1709
BtgI CCRYGG 2 cut(s) 571, 1158
BtsCI GGATG 3 cut(s) 827, 1229, 1233
BtsIMutI CAGTG 3 cut(s) 312, 1455, 1587
BveI ACCTGC 1 cut(s) 4
Cac8I GCNNGC 6 cut(s) 59, 483, 1112, 1398, 1646, 1833
CciI TCATGA 1 cut(s) 1315
CfoI GCGC 6 cut(s) 373, 492, 1587, 1789, 1833, 1835
Cfr13I GGNCC 2 cut(s) 29, 1243
CseI GACGC 1 cut(s) 776
Csp6I GTAC 6 cut(s) 17, 751, 810, 1142, 1388, 1812
CviQI GTAC 6 cut(s) 17, 751, 810, 1142, 1388, 1812
DdeI CTNAG 4 cut(s) 657, 665, 1031, 1352
DpnI GATC 6 cut(s) 96, 111, 200, 307, 1314, 1613
DpnII GATC 6 cut(s) 94, 109, 198, 305, 1312, 1611
DrdI GACNNNNNNGTC 2 cut(s) 1153, 1595
DriI GACNNNNNGTC 1 cut(s) 1241
DseDI GACNNNNNNGTC 2 cut(s) 1153, 1595
EaeI YGGCCR 2 cut(s) 921, 1707
EagI CGGCCG 1 cut(s) 921
Eam1104I CTCTTC 3 cut(s) 903, 1268, 1290
Eam1105I GACNNNNNGTC 1 cut(s) 1241
EarI CTCTTC 3 cut(s) 903, 1268, 1290
Ecl136II GAGCTC 1 cut(s) 1490
EclXI CGGCCG 1 cut(s) 921
Eco105I TACGTA 1 cut(s) 1025
Eco130I CCWWGG 4 cut(s) 571, 736, 1158, 1710
Eco24I GRGCYC 1 cut(s) 1492
Eco31I GGTCTC 2 cut(s) 211, 1815
Eco47I GGWCC 1 cut(s) 1243
Eco52I CGGCCG 1 cut(s) 921
Eco53kI GAGCTC 1 cut(s) 1490
Eco57I CTGAAG 1 cut(s) 927
EcoICRI GAGCTC 1 cut(s) 1490
EcoO109I RGGNCCY 1 cut(s) 1243
EcoRII CCWGG 1 cut(s) 1824
EcoT14I CCWWGG 4 cut(s) 571, 736, 1158, 1710
EcoT22I ATGCAT 1 cut(s) 1458
EcoT38I GRGCYC 1 cut(s) 1492
ErhI CCWWGG 4 cut(s) 571, 736, 1158, 1710
FalI AAGNNNNNCTT 2 cut(s) 818, 850
FaqI GGGAC 2 cut(s) 1229, 1583
FauI CCCGC 1 cut(s) 880
FbaI TGATCA 1 cut(s) 1312
Fnu4HI GCNGC 3 cut(s) 441, 584, 924
FokI GGATG 3 cut(s) 834, 1236, 1240
FriOI GRGCYC 1 cut(s) 1492
Fsp4HI GCNGC 3 cut(s) 441, 584, 924
FspAI RTGCGCAY 1 cut(s) 372
FspBI CTAG 5 cut(s) 482, 614, 1379, 1496, 1815
FspI TGCGCA 1 cut(s) 372
GlaI GCGC 6 cut(s) 372, 491, 1586, 1788, 1832, 1834
GluI GCNGC 3 cut(s) 441, 584, 924
GsaI CCCAGC 1 cut(s) 477
HaeII RGCGCY 1 cut(s) 493
HaeIII GGCC 4 cut(s) 30, 570, 923, 1709
HapII CCGG 1 cut(s) 413
HgaI GACGC 1 cut(s) 776
HhaI GCGC 6 cut(s) 373, 492, 1587, 1789, 1833, 1835
Hin1I GRCGYC 1 cut(s) 787
Hin6I GCGC 6 cut(s) 371, 490, 1585, 1787, 1831, 1833
HinP1I GCGC 6 cut(s) 371, 490, 1585, 1787, 1831, 1833
HindIII AAGCTT 1 cut(s) 1394
HinfI GANTC 4 cut(s) 80, 595, 1321, 1804
HpaII CCGG 1 cut(s) 413
Hpy188I TCNGA 7 cut(s) 400, 600, 660, 668, 989, 1341, 1774
Hpy188III TCNNGA 3 cut(s) 113, 1052, 1316
Hpy99I CGWCG 1 cut(s) 792
HpyAV CCTTC 5 cut(s) 424, 812, 1514, 1627, 1685
HpyCH4III ACNGT 3 cut(s) 814, 1550, 1582
HpyCH4IV ACGT 2 cut(s) 1024, 1596
HpyF10VI GCNNNNNNNGC 6 cut(s) 487, 496, 535, 923, 1453, 1645
HpyF3I CTNAG 4 cut(s) 657, 665, 1031, 1352
HpySE526I ACGT 2 cut(s) 1024, 1596
Hsp92I GRCGYC 1 cut(s) 787
HspAI GCGC 6 cut(s) 371, 490, 1585, 1787, 1831, 1833
KpnI GGTACC 1 cut(s) 20
Ksp22I TGATCA 1 cut(s) 1312
Kzo9I GATC 6 cut(s) 94, 109, 198, 305, 1312, 1611
LmnI GCTCC 5 cut(s) 740, 1487, 1495, 1636, 1828
Lsp1109I GCAGC 1 cut(s) 452
LweI GCATC 3 cut(s) 106, 358, 1443
MaeI CTAG 5 cut(s) 482, 614, 1379, 1496, 1815
MaeII ACGT 2 cut(s) 1024, 1596
MaeIII GTNAC 6 cut(s) 81, 319, 848, 1433, 1544, 1621
MalI GATC 6 cut(s) 96, 111, 200, 307, 1314, 1613
MboI GATC 6 cut(s) 94, 109, 198, 305, 1312, 1611
MflI RGATCY 2 cut(s) 94, 109
MhlI GDGCHC 2 cut(s) 1469, 1492
MlsI TGGCCA 1 cut(s) 1709
MluNI TGGCCA 1 cut(s) 1709
MlyI GAGTC 2 cut(s) 89, 1315
Mox20I TGGCCA 1 cut(s) 1709
Mph1103I ATGCAT 1 cut(s) 1458
MroXI GAANNNNTTC 1 cut(s) 150
MscI TGGCCA 1 cut(s) 1709
MseI TTAA 6 cut(s) 690, 702, 882, 1269, 1332, 1837
Msp20I TGGCCA 1 cut(s) 1709
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 1 cut(s) 413
MspR9I CCNGG 1 cut(s) 1826
Mva1269I GAATGC 3 cut(s) 919, 949, 1509
MvaI CCWGG 1 cut(s) 1826
MvnI CGCG 4 cut(s) 91, 203, 1587, 1833
MwoI GCNNNNNNNGC 6 cut(s) 487, 496, 535, 923, 1453, 1645
NcoI CCATGG 2 cut(s) 571, 1158
NdeII GATC 6 cut(s) 94, 109, 198, 305, 1312, 1611
NheI GCTAGC 1 cut(s) 481
NlaIV GGNNCC 4 cut(s) 18, 411, 1245, 1468
NmeAIII GCCGAG 2 cut(s) 654, 1344
NmuCI GTSAC 4 cut(s) 81, 319, 848, 1433
NsbI TGCGCA 1 cut(s) 372
NsiI ATGCAT 1 cut(s) 1458
NspI RCATGY 2 cut(s) 195, 798
NspV TTCGAA 3 cut(s) 428, 558, 1682
PagI TCATGA 1 cut(s) 1315
PauI GCGCGC 1 cut(s) 1831
PcsI WCGNNNNNNNCGW 1 cut(s) 1467
PctI GAATGC 3 cut(s) 919, 949, 1509
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 2 cut(s) 595, 1804
PkrI GCNGC 3 cut(s) 442, 585, 925
Ple19I CGATCG 1 cut(s) 308
PleI GAGTC 2 cut(s) 88, 1315
PpsI GAGTC 2 cut(s) 88, 1315
Ppu21I YACGTR 1 cut(s) 1025
PpuMI RGGWCCY 1 cut(s) 1243
Psp124BI GAGCTC 1 cut(s) 1492
Psp5II RGGWCCY 1 cut(s) 1243
Psp6I CCWGG 1 cut(s) 1824
PspFI CCCAGC 1 cut(s) 473
PspGI CCWGG 1 cut(s) 1824
PspN4I GGNNCC 4 cut(s) 18, 411, 1245, 1468
PspPI GGNCC 2 cut(s) 29, 1243
PspPPI RGGWCCY 1 cut(s) 1243
PsuI RGATCY 2 cut(s) 94, 109
PteI GCGCGC 1 cut(s) 1831
PvuI CGATCG 1 cut(s) 308
RgaI GCGATCGC 1 cut(s) 308
RsaI GTAC 6 cut(s) 18, 752, 811, 1143, 1389, 1813
RsaNI GTAC 6 cut(s) 17, 751, 810, 1142, 1388, 1812
SacI GAGCTC 1 cut(s) 1492
SaqAI TTAA 6 cut(s) 690, 702, 882, 1269, 1332, 1837
SatI GCNGC 3 cut(s) 441, 584, 924
Sau3AI GATC 6 cut(s) 94, 109, 198, 305, 1312, 1611
Sau96I GGNCC 2 cut(s) 29, 1243
ScaI AGTACT 1 cut(s) 1813
SchI GAGTC 2 cut(s) 89, 1315
ScrFI CCNGG 1 cut(s) 1826
SduI GDGCHC 2 cut(s) 1469, 1492
SfaAI GCGATCGC 1 cut(s) 308
SfaNI GCATC 3 cut(s) 106, 358, 1443
SfuI TTCGAA 3 cut(s) 428, 558, 1682
SgfI GCGATCGC 1 cut(s) 308
SinI GGWCC 1 cut(s) 1243
SmlI CTYRAG 1 cut(s) 1717
SmoI CTYRAG 1 cut(s) 1717
SnaBI TACGTA 1 cut(s) 1025
SsiI CCGC 6 cut(s) 89, 203, 443, 583, 873, 924
SspI AATATT 4 cut(s) 546, 856, 942, 1336
SspMI CTAG 5 cut(s) 482, 614, 1379, 1496, 1815
SstI GAGCTC 1 cut(s) 1492
StyD4I CCNGG 1 cut(s) 1824
StyI CCWWGG 4 cut(s) 571, 736, 1158, 1710
TaaI ACNGT 3 cut(s) 814, 1550, 1582
TaiI ACGT 2 cut(s) 1027, 1599
TaqI TCGA 7 cut(s) 428, 558, 640, 790, 1053, 1614, 1682
TatI WGTACW 3 cut(s) 809, 1141, 1811
TauI GCSGC 2 cut(s) 586, 926
TfiI GAWTC 2 cut(s) 595, 1804
Tru1I TTAA 6 cut(s) 690, 702, 882, 1269, 1332, 1837
Tru9I TTAA 6 cut(s) 690, 702, 882, 1269, 1332, 1837
TscAI CASTG 3 cut(s) 319, 1455, 1587
TseFI GTSAC 4 cut(s) 81, 319, 848, 1433
TseI GCWGC 1 cut(s) 440
Tsp45I GTSAC 4 cut(s) 81, 319, 848, 1433
TspDTI ATGAA 2 cut(s) 261, 417
TspRI CASTG 3 cut(s) 319, 1455, 1587
VpaK11BI GGWCC 1 cut(s) 1243
XapI RAATTY 4 cut(s) 422, 601, 642, 1252
XceI RCATGY 2 cut(s) 195, 798
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 5 cut(s) 482, 614, 1379, 1496, 1815
ZrmI AGTACT 1 cut(s) 1813
Zsp2I ATGCAT 1 cut(s) 1458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.