Rh1CG064700

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000119
Physical Location & Seq
Forward (+)
12889209 .. 12890442
1234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG064700.1

Sequence Viewer

Length: 738 bp
ATGGAAGCTCAAAGATGGGAGGTTATAAGAAACAAGATGCTTTTGAAAGAGAAAGATATAGAAAGATGGATGGACAGGAATGAACTGCCCGATGATATGAAGAAAGAAATCAAGAAAAACATAACGCAAAAATTGGAAGAAAACAAAGATTCAGATCTGGAGAACCTTTTCAATATTCTTCCCTGGTACACCAAAAAGTACCTAAAGCGAGTTCTCTGCATGGACATACTAAAGAAAGTACCTAAACTGGAAAGAATGGATGAGAAAGTGTTGAAAATGATCTGCGACTATCTAAAGCCAGAGATGTATGCTGAGGGCACCATGGTTTTTCACATGGGAGAACCGCTTGATAGCATGCTATTCATTACAGAAGGCACTATACTGACCTACAAAACTACCGGTACAGATAATCATGCTCATGAAAACGCAAAATTGGGTCCTCCTGCATCCCCATCAATCGGCACCCTTGAGAAAGGCTACTTCTATGGCGAACAACTGCTGCACTGGGCATCACAAAAAAACGTGAATTTAACGGAGGTCCCTAGCTCTGCCGACAATGTGAAGTGCCATACAAAAGTAGAAGGCTTTGTTCTCATGGCCAAGGACTTAAGAACTGTAGTCTCCAAATGTGAGTACTGGTGGAAATTAAGCATTAGTAATCCTAGAGTGGGTGGTACTCGGACCACACCAAATGCTAGGAATGTGCAGCAGAAACCTGGAGTGGATCCCCAGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

245

Amino Acids

28.5

Weight (kDa)

8.49

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 26
AccB1I GGYRCC 2 cut(s) 317, 461
AciI CCGC 1 cut(s) 344
AclWI GGATC 2 cut(s) 719, 732
AcoI YGGCCR 1 cut(s) 597
AcsI RAATTY 1 cut(s) 526
AfaI GTAC 7 cut(s) 188, 200, 240, 403, 635, 676, 734
AfiI CCNNNNNNNGG 2 cut(s) 458, 668
AflII CTTAAG 1 cut(s) 607
AgeI ACCGGT 1 cut(s) 398
AgsI TTSAA 3 cut(s) 46, 172, 274
AjnI CCWGG 2 cut(s) 182, 715
AluBI AGCT 2 cut(s) 8, 546
AluI AGCT 2 cut(s) 8, 546
Alw26I GTCTC 1 cut(s) 625
AlwI GGATC 2 cut(s) 719, 732
AoxI GGCC 1 cut(s) 597
ApeKI GCWGC 2 cut(s) 499, 706
ApoI RAATTY 1 cut(s) 526
AsiGI ACCGGT 1 cut(s) 398
Asp700I GAANNNNTTC 1 cut(s) 167
AspS9I GGNCC 3 cut(s) 437, 538, 681
AvaII GGWCC 3 cut(s) 437, 538, 681
BaeGI GKGCMC 1 cut(s) 320
BalI TGGCCA 1 cut(s) 599
BamHI GGATCC 1 cut(s) 724
BanI GGYRCC 2 cut(s) 317, 461
BarI GAAGNNNNNNTAC 2 cut(s) 363, 395
BbvCI CCTCAGC 1 cut(s) 312
BbvI GCAGC 2 cut(s) 486, 718
BccI CCATC 4 cut(s) 9, 60, 64, 460
BcgI CGANNNNNNTGC 2 cut(s) 198, 232
BciT130I CCWGG 2 cut(s) 184, 717
BcoDI GTCTC 1 cut(s) 625
BfaI CTAG 4 cut(s) 543, 663, 696, 736
BfmI CTRYAG 1 cut(s) 615
BfrI CTTAAG 1 cut(s) 607
BglII AGATCT 1 cut(s) 154
BisI GCNGC 2 cut(s) 500, 707
BlsI GCNGC 2 cut(s) 501, 708
BmcAI AGTACT 2 cut(s) 635, 734
Bme1390I CCNGG 2 cut(s) 184, 717
Bme18I GGWCC 3 cut(s) 437, 538, 681
BmgT120I GGNCC 3 cut(s) 437, 538, 681
BmiI GGNNCC 5 cut(s) 319, 438, 463, 540, 726
BmrFI CCNGG 2 cut(s) 184, 717
BmrI ACTGGG 2 cut(s) 514, 724
BmsI GCATC 3 cut(s) 27, 455, 518
BmuI ACTGGG 2 cut(s) 514, 724
BpmI CTGGAG 2 cut(s) 179, 738
Bpu10I CCTNAGC 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 488
BsaBI GATNNNNATC 1 cut(s) 153
BsaJI CCNNGG 3 cut(s) 182, 321, 600
BsaWI WCCGGW 1 cut(s) 398
Bsc4I CCNNNNNNNGG 2 cut(s) 458, 668
Bse118I RCCGGY 1 cut(s) 398
Bse1I ACTGG 4 cut(s) 252, 509, 641, 730
Bse8I GATNNNNATC 1 cut(s) 153
BseBI CCWGG 2 cut(s) 184, 717
BseDI CCNNGG 3 cut(s) 182, 321, 600
BseGI GGATG 3 cut(s) 75, 265, 446
BseJI GATNNNNATC 1 cut(s) 153
BseLI CCNNNNNNNGG 2 cut(s) 458, 668
BseMII CTCAG 1 cut(s) 303
BseNI ACTGG 4 cut(s) 252, 509, 641, 730
BseSI GKGCMC 1 cut(s) 320
BseXI GCAGC 2 cut(s) 486, 718
BsgI GTGCAG 2 cut(s) 485, 725
BshFI GGCC 1 cut(s) 599
BshNI GGYRCC 2 cut(s) 317, 461
BshTI ACCGGT 1 cut(s) 398
BsiSI CCGG 1 cut(s) 399
BslFI GGGAC 1 cut(s) 524
BslI CCNNNNNNNGG 2 cut(s) 458, 668
BsmAI GTCTC 1 cut(s) 625
BsmFI GGGAC 1 cut(s) 524
BsnI GGCC 1 cut(s) 599
Bsp1286I GDGCHC 1 cut(s) 320
Bsp143I GATC 3 cut(s) 154, 279, 724
Bsp19I CCATGG 1 cut(s) 321
BspACI CCGC 1 cut(s) 344
BspANI GGCC 1 cut(s) 599
BspCNI CTCAG 1 cut(s) 304
BspHI TCATGA 1 cut(s) 418
BspLI GGNNCC 5 cut(s) 319, 438, 463, 540, 726
BspPI GGATC 2 cut(s) 719, 732
BspT107I GGYRCC 2 cut(s) 317, 461
BspTI CTTAAG 1 cut(s) 607
BsrFI RCCGGY 1 cut(s) 398
BsrI ACTGG 4 cut(s) 252, 509, 641, 730
BssAI RCCGGY 1 cut(s) 398
BssECI CCNNGG 3 cut(s) 182, 321, 600
BssMI GATC 3 cut(s) 154, 279, 724
BssT1I CCWWGG 2 cut(s) 321, 600
Bst2UI CCWGG 2 cut(s) 184, 717
Bst4CI ACNGT 1 cut(s) 616
BstAFI CTTAAG 1 cut(s) 607
BstC8I GCNNGC 1 cut(s) 356
BstDEI CTNAG 1 cut(s) 312
BstDSI CCRYGG 1 cut(s) 321
BstF5I GGATG 3 cut(s) 75, 265, 446
BstKTI GATC 3 cut(s) 157, 282, 727
BstMAI GTCTC 1 cut(s) 625
BstMBI GATC 3 cut(s) 154, 279, 724
BstNI CCWGG 2 cut(s) 184, 717
BstNSI RCATGY 1 cut(s) 358
BstSCI CCNGG 2 cut(s) 182, 715
BstSFI CTRYAG 1 cut(s) 615
BstSLI GKGCMC 1 cut(s) 320
BstV1I GCAGC 2 cut(s) 486, 718
BstX2I RGATCY 2 cut(s) 154, 724
BstYI RGATCY 2 cut(s) 154, 724
BsuRI GGCC 1 cut(s) 599
BtgI CCRYGG 1 cut(s) 321
BtsCI GGATG 3 cut(s) 75, 265, 446
BtsIMutI CAGTG 1 cut(s) 502
Cac8I GCNNGC 1 cut(s) 356
CciI TCATGA 1 cut(s) 418
Cfr10I RCCGGY 1 cut(s) 398
Cfr13I GGNCC 3 cut(s) 437, 538, 681
Csp6I GTAC 7 cut(s) 187, 199, 239, 402, 634, 675, 733
CspAI ACCGGT 1 cut(s) 398
CviAII CATG 7 cut(s) 220, 322, 334, 355, 413, 419, 595
CviJI RGCY 6 cut(s) 8, 298, 477, 546, 585, 599
CviKI_1 RGCY 6 cut(s) 8, 298, 477, 546, 585, 599
CviQI GTAC 7 cut(s) 187, 199, 239, 402, 634, 675, 733
DdeI CTNAG 1 cut(s) 312
DpnI GATC 3 cut(s) 156, 281, 726
DpnII GATC 3 cut(s) 154, 279, 724
EaeI YGGCCR 1 cut(s) 597
Eco130I CCWWGG 2 cut(s) 321, 600
Eco47I GGWCC 3 cut(s) 437, 538, 681
EcoO109I RGGNCCY 2 cut(s) 437, 538
EcoRII CCWGG 2 cut(s) 182, 715
EcoT14I CCWWGG 2 cut(s) 321, 600
ErhI CCWWGG 2 cut(s) 321, 600
FaeI CATG 7 cut(s) 223, 325, 337, 358, 416, 422, 598
FaqI GGGAC 1 cut(s) 524
FatI CATG 7 cut(s) 219, 321, 333, 354, 412, 418, 594
Fnu4HI GCNGC 2 cut(s) 500, 707
FokI GGATG 3 cut(s) 82, 272, 433
Fsp4HI GCNGC 2 cut(s) 500, 707
FspBI CTAG 4 cut(s) 543, 663, 696, 736
GluI GCNGC 2 cut(s) 500, 707
GsuI CTGGAG 2 cut(s) 179, 738
HaeIII GGCC 1 cut(s) 599
HapII CCGG 1 cut(s) 399
Hin1II CATG 7 cut(s) 223, 325, 337, 358, 416, 422, 598
HinfI GANTC 1 cut(s) 149
HpaII CCGG 1 cut(s) 399
Hpy166II GTNNAC 1 cut(s) 189
Hpy188I TCNGA 2 cut(s) 154, 681
Hpy188III TCNNGA 3 cut(s) 112, 158, 419
Hpy8I GTNNAC 1 cut(s) 189
HpyAV CCTTC 2 cut(s) 365, 575
HpyCH4III ACNGT 1 cut(s) 616
HpyCH4IV ACGT 1 cut(s) 522
HpyCH4V TGCA 4 cut(s) 219, 446, 502, 706
HpyF3I CTNAG 1 cut(s) 312
HpySE526I ACGT 1 cut(s) 522
Hsp92II CATG 7 cut(s) 223, 325, 337, 358, 416, 422, 598
Kzo9I GATC 3 cut(s) 154, 279, 724
Lsp1109I GCAGC 2 cut(s) 486, 718
LweI GCATC 3 cut(s) 27, 455, 518
MaeI CTAG 4 cut(s) 543, 663, 696, 736
MaeII ACGT 1 cut(s) 522
MalI GATC 3 cut(s) 156, 281, 726
MboI GATC 3 cut(s) 154, 279, 724
MboII GAAGA 3 cut(s) 112, 149, 170
MflI RGATCY 2 cut(s) 154, 724
MhlI GDGCHC 1 cut(s) 320
MlsI TGGCCA 1 cut(s) 599
MluCI AATT 4 cut(s) 131, 431, 526, 644
MluNI TGGCCA 1 cut(s) 599
MnlI CCTC 4 cut(s) 13, 307, 450, 529
Mox20I TGGCCA 1 cut(s) 599
MroXI GAANNNNTTC 1 cut(s) 167
MscI TGGCCA 1 cut(s) 599
MseI TTAA 3 cut(s) 530, 608, 647
MslI CAYNNNNRTG 1 cut(s) 417
Msp20I TGGCCA 1 cut(s) 599
MspCI CTTAAG 1 cut(s) 607
MspI CCGG 1 cut(s) 399
MspR9I CCNGG 2 cut(s) 184, 717
MvaI CCWGG 2 cut(s) 184, 717
NcoI CCATGG 1 cut(s) 321
NdeII GATC 3 cut(s) 154, 279, 724
NlaIII CATG 7 cut(s) 223, 325, 337, 358, 416, 422, 598
NlaIV GGNNCC 5 cut(s) 319, 438, 463, 540, 726
NspI RCATGY 1 cut(s) 358
PaeI GCATGC 1 cut(s) 358
PagI TCATGA 1 cut(s) 418
PdmI GAANNNNTTC 1 cut(s) 167
PfeI GAWTC 1 cut(s) 149
PinAI ACCGGT 1 cut(s) 398
PkrI GCNGC 2 cut(s) 501, 708
PpuMI RGGWCCY 2 cut(s) 437, 538
PsiI TTATAA 1 cut(s) 26
Psp5II RGGWCCY 2 cut(s) 437, 538
Psp6I CCWGG 2 cut(s) 182, 715
PspGI CCWGG 2 cut(s) 182, 715
PspN4I GGNNCC 5 cut(s) 319, 438, 463, 540, 726
PspPI GGNCC 3 cut(s) 437, 538, 681
PspPPI RGGWCCY 2 cut(s) 437, 538
PsuI RGATCY 2 cut(s) 154, 724
RsaI GTAC 7 cut(s) 188, 200, 240, 403, 635, 676, 734
RsaNI GTAC 7 cut(s) 187, 199, 239, 402, 634, 675, 733
RseI CAYNNNNRTG 1 cut(s) 417
SaqAI TTAA 3 cut(s) 530, 608, 647
SatI GCNGC 2 cut(s) 500, 707
Sau3AI GATC 3 cut(s) 154, 279, 724
Sau96I GGNCC 3 cut(s) 437, 538, 681
ScaI AGTACT 2 cut(s) 635, 734
ScrFI CCNGG 2 cut(s) 184, 717
SduI GDGCHC 1 cut(s) 320
SfaNI GCATC 3 cut(s) 27, 455, 518
SfcI CTRYAG 1 cut(s) 615
SinI GGWCC 3 cut(s) 437, 538, 681
SmiMI CAYNNNNRTG 1 cut(s) 417
SmlI CTYRAG 2 cut(s) 467, 607
SmoI CTYRAG 2 cut(s) 467, 607
SphI GCATGC 1 cut(s) 358
Sse9I AATT 4 cut(s) 131, 431, 526, 644
SsiI CCGC 1 cut(s) 344
SspI AATATT 1 cut(s) 175
SspMI CTAG 4 cut(s) 543, 663, 696, 736
StyD4I CCNGG 2 cut(s) 182, 715
StyI CCWWGG 2 cut(s) 321, 600
TaaI ACNGT 1 cut(s) 616
TaiI ACGT 1 cut(s) 525
TasI AATT 4 cut(s) 131, 431, 526, 644
TatI WGTACW 2 cut(s) 633, 732
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 3 cut(s) 530, 608, 647
Tru9I TTAA 3 cut(s) 530, 608, 647
TscAI CASTG 1 cut(s) 509
TseI GCWGC 2 cut(s) 499, 706
TspDTI ATGAA 4 cut(s) 96, 113, 352, 435
TspGWI ACGGA 1 cut(s) 548
TspRI CASTG 1 cut(s) 509
Vha464I CTTAAG 1 cut(s) 607
VpaK11BI GGWCC 3 cut(s) 437, 538, 681
XapI RAATTY 1 cut(s) 526
XceI RCATGY 1 cut(s) 358
XmnI GAANNNNTTC 1 cut(s) 167
XspI CTAG 4 cut(s) 543, 663, 696, 736
ZrmI AGTACT 2 cut(s) 635, 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.