FvH4_7g31850

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000119
Physical Location & Seq
Reverse (-)
22985902 .. 22989406
3505 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g31850.t1

Sequence Viewer

Length: 1944 bp
ATGGCTAAACATCAGGGACCAAACAATGAAATCCAAATGAGCATTACACCAGAAATGTCTTATGATTTCTATAGTCCTGAGGCTCTATGGCCACATCGAAAACCGACACCCGAACATGGACAACCTCAAGCAAGAAGCAAAAGATGGAATTGGCCAATAGTTGCCGGAATTTCTTCAGCTTTGAACCCATGGTGGAATAAGATACTGGTAACTTCATGTGTGATTGCAGTTTTATTTGATCCCTTGTTCTTTTACATTCCATACACCAGCGAGGAAAAAAAGTGTATGGGAAACGACGAAAGAGTGCAGACTGCAGCTCTGATTTTCCGATCAGTCACAGACATCACTTTCCTGGTGCATATCATATACCAACTATATGTGGCTATCAAATTTGCACTCACAAGGGTTTCAGAGGATGAAAGTTTGGTTTTTAAATATGAATCGGTATCCCGAGAGCAAATGATTCAGTTTGCAAAGGCATTTTCTCACAAGTTGTCATGGCGATCTTTCCTAACTGACGTTTTCGCTATATTGCCCATACCACAACTGCTAATAGTAGGATTGTTTTTCAAAATCGGAGGCAATGACTACTTGTTAAAAAGAAAGATTGTGAGCGGTTTTCTTCTAATCCAATATATGCCAAGAGTCTATCGAATTTATCTTTCATCTGTCGCGATCACAGAATCTGCATTGTGGGTTAGAGGTGTATTTAACTTTTTCCTCTACATCCTTGCGAGTCATGTAGTTGGAGCCTTTTGGTACTTTTTTTCTATTCAGCGAGAGACATCATGTTGGTATCGAACTTGCATCGCCGATAAAAATCGAACAGAATCAGAATGTACCTTTTACTGCCAAAACAGTACTGCTGCACTTATAACCCCACAATTCAATACAACTCTAGACGAGCAATGCATTCTAAAAGTTCCATATAACATGACCGATCCACCATTTGATTTTGGAATATTTTTTGATGCCCTCAAAAATGATATCCAAGGGAAAATAAATGTTCCAAAAAAGATTGGTTACTGTTTTTGGTGGGGCTTGCGAAACTTGAGTAATTTTGGTACAAGTTTAACAACAAGTACCTATCTGTGGGAAAACAGCTTTGCCATTTTTATTTCTATCATCGGCTTGCTATTGTTTTTATACCTCATTGGAAATGTACAGATTTATATGGAGAGGGCAACTACCAGAGCGGATGAGGTAAGAGAGAAGATCCGGATCAAAAAGAACGATATAGATAATTGGATCCAAAATAATGGTCTCGAGAAGGACATGAAGGAAGAGATCATGAAAAACATCAATGAGAAGTTGGAAAAGGACATAAGTGCAGATCTGGATGATATATACTCTCTTCTTCGCCCGTATACCAGGAAAGTTGTGAAGCGATTTGTCGGCATGAAGACGCTAAGAAAGGTACCAATGCTTAGCGAGGTGGATGGAAGAGTTTTGAAGATGATGTGCGACTATCTGAAGCCGGTCCATTACCAGGAGAATACAATGGTTTTTGAAATGGGAGTACCATTTGATAGAATGGTCTTCATTACAGATGGGTCAATGTGGACTTACACGACTGCTACTGATCATCAGACTAGTCATTCTGGAAAAGCAACGTCAGGAGGACTAGTTCCTTCTTCGTCCATGGAAGCTCACTTCCTCGAGAAGGGTGATGCTTATGGACACATGCTTCTGCAATTAGCATCATCATCATCTTTTAAGGCGCTTCCTATCTCAGTTGCAAATGTCAAGTGCCAGTCAAAGGTAGAGGCGTTTGTCCTCACGGCCAATGACTTGAGAAACATAGTAACTGCGTGCGGAGATTTTTGGCCGGCTTTCGACTACAATGCTTCTCAAGATGAGGCGGCTGATCAGAAGGCACCGGCCGGGCCAAGGAAGCGTACTGTAGCAACATCAAATATCCATCCTACCGGCTACAGTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

648

Amino Acids

74.15

Weight (kDa)

8.43

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 62 - 398 6.6e-08 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 875
Acc65I GGTACC 1 cut(s) 1417
AccB1I GGYRCC 2 cut(s) 1417, 1876
AccBSI CCGCTC 2 cut(s) 615, 1196
AccI GTMKAC 1 cut(s) 1367
AccII CGCG 1 cut(s) 674
AccIII TCCGGA 1 cut(s) 1218
AciI CCGC 4 cut(s) 615, 1196, 1815, 1862
AclWI GGATC 6 cut(s) 233, 935, 1210, 1229, 1243, 1256
AcoI YGGCCR 5 cut(s) 89, 152, 1782, 1826, 1881
AcsI RAATTY 3 cut(s) 168, 389, 654
AcuI CTGAAG 2 cut(s) 159, 1493
AfaI GTAC 9 cut(s) 761, 841, 862, 1066, 1084, 1164, 1419, 1521, 1900
AfiI CCNNNNNNNGG 6 cut(s) 116, 1092, 1489, 1663, 1759, 1890
AgsI TTSAA 5 cut(s) 184, 571, 889, 1453, 1511
AhlI ACTAGT 2 cut(s) 1592, 1624
AjnI CCWGG 3 cut(s) 351, 1370, 1488
AloI GAACNNNNNNTCC 2 cut(s) 1611, 1643
AluBI AGCT 4 cut(s) 179, 317, 1104, 1649
AluI AGCT 4 cut(s) 179, 317, 1104, 1649
Alw26I GTCTC 2 cut(s) 776, 1268
AlwI GGATC 6 cut(s) 233, 935, 1210, 1229, 1243, 1256
AlwNI CAGNNNCTG 1 cut(s) 686
Ama87I CYCGRG 3 cut(s) 450, 1265, 1658
Aor13HI TCCGGA 1 cut(s) 1218
AoxI GGCC 6 cut(s) 89, 152, 1782, 1826, 1881, 1886
ApeKI GCWGC 2 cut(s) 314, 866
ApoI RAATTY 3 cut(s) 168, 389, 654
ArsI GACNNNNNNTTYG 2 cut(s) 1246, 1278
Asp700I GAANNNNTTC 1 cut(s) 172
Asp718I GGTACC 1 cut(s) 1417
AspLEI GCGC 1 cut(s) 1723
AspS9I GGNCC 3 cut(s) 17, 1480, 1886
AsuC2I CCSGG 1 cut(s) 1885
AsuHPI GGTGA 1 cut(s) 1679
AvaI CYCGRG 3 cut(s) 450, 1265, 1658
AvaII GGWCC 2 cut(s) 17, 1480
AxyI CCTNAGG 1 cut(s) 78
BalI TGGCCA 2 cut(s) 91, 154
BamHI GGATCC 1 cut(s) 1248
BanI GGYRCC 2 cut(s) 1417, 1876
BbsI GAAGAC 2 cut(s) 1409, 1531
BbvI GCAGC 2 cut(s) 326, 853
BccI CCATC 4 cut(s) 138, 1433, 1544, 1929
BceAI ACGGC 1 cut(s) 1797
BcgI CGANNNNNNTGC 2 cut(s) 1826, 1860
BciT130I CCWGG 3 cut(s) 353, 1372, 1490
BciVI GTATCC 1 cut(s) 457
BclI TGATCA 2 cut(s) 1582, 1867
BcnI CCSGG 1 cut(s) 1885
BcoDI GTCTC 2 cut(s) 776, 1268
BcuI ACTAGT 2 cut(s) 1592, 1624
BfaI CTAG 3 cut(s) 899, 1593, 1625
BfmI CTRYAG 4 cut(s) 70, 312, 1902, 1933
BfoI RGCGCY 1 cut(s) 1724
BfuI GTATCC 1 cut(s) 457
BglII AGATCT 1 cut(s) 1333
BisI GCNGC 3 cut(s) 315, 867, 1863
BlpI GCTNAGC 1 cut(s) 1427
BlsI GCNGC 3 cut(s) 316, 868, 1864
BmcAI AGTACT 1 cut(s) 862
Bme1390I CCNGG 4 cut(s) 353, 1372, 1490, 1885
Bme18I GGWCC 2 cut(s) 17, 1480
BmeT110I CYCGRG 3 cut(s) 450, 1265, 1658
BmgT120I GGNCC 3 cut(s) 17, 1480, 1886
BmiI GGNNCC 5 cut(s) 18, 751, 1250, 1419, 1878
BmrFI CCNGG 4 cut(s) 353, 1372, 1490, 1885
BmsI GCATC 4 cut(s) 816, 961, 1660, 1709
BpiI GAAGAC 2 cut(s) 1409, 1531
Bpu1102I GCTNAGC 1 cut(s) 1427
BpuEI CTTGAG 4 cut(s) 111, 1072, 1813, 1836
BpuMI CCSGG 1 cut(s) 1885
BsaBI GATNNNNATC 2 cut(s) 819, 1220
BsaI GGTCTC 1 cut(s) 1268
BsaJI CCNNGG 4 cut(s) 188, 991, 1641, 1889
BsaWI WCCGGW 1 cut(s) 1218
BsaXI ACNNNNNCTCC 2 cut(s) 1611, 1641
Bsc4I CCNNNNNNNGG 6 cut(s) 116, 1092, 1489, 1663, 1759, 1890
Bse118I RCCGGY 4 cut(s) 1477, 1828, 1879, 1928
Bse1I ACTGG 2 cut(s) 210, 1753
Bse21I CCTNAGG 1 cut(s) 78
Bse3DI GCAATG 2 cut(s) 589, 914
Bse8I GATNNNNATC 2 cut(s) 819, 1220
BseAI TCCGGA 1 cut(s) 1218
BseBI CCWGG 3 cut(s) 353, 1372, 1490
BseDI CCNNGG 4 cut(s) 188, 991, 1641, 1889
BseGI GGATG 6 cut(s) 421, 726, 1204, 1345, 1444, 1921
BseJI GATNNNNATC 2 cut(s) 819, 1220
BseLI CCNNNNNNNGG 6 cut(s) 116, 1092, 1489, 1663, 1759, 1890
BseMI GCAATG 2 cut(s) 589, 914
BseMII CTCAG 2 cut(s) 69, 1746
BseNI ACTGG 2 cut(s) 210, 1753
BseX3I CGGCCG 1 cut(s) 1881
BseXI GCAGC 2 cut(s) 326, 853
BsgI GTGCAG 3 cut(s) 326, 852, 1350
Bsh1236I CGCG 1 cut(s) 674
Bsh1285I CGRYCG 1 cut(s) 1884
BshFI GGCC 6 cut(s) 91, 154, 1784, 1828, 1883, 1888
BshNI GGYRCC 2 cut(s) 1417, 1876
BsiEI CGRYCG 1 cut(s) 1884
BsiHKCI CYCGRG 3 cut(s) 450, 1265, 1658
BsiSI CCGG 7 cut(s) 165, 1219, 1478, 1829, 1880, 1884, 1929
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 6 cut(s) 116, 1092, 1489, 1663, 1759, 1890
BsmAI GTCTC 2 cut(s) 776, 1268
BsmFI GGGAC 1 cut(s) 30
BsmI GAATGC 1 cut(s) 912
BsnI GGCC 6 cut(s) 91, 154, 1784, 1828, 1883, 1888
Bso31I GGTCTC 1 cut(s) 1268
BsoBI CYCGRG 3 cut(s) 450, 1265, 1658
Bsp13I TCCGGA 1 cut(s) 1218
Bsp1407I TGTACA 1 cut(s) 1162
Bsp1720I GCTNAGC 1 cut(s) 1427
Bsp19I CCATGG 2 cut(s) 188, 1641
Bsp68I TCGCGA 1 cut(s) 674
BspACI CCGC 4 cut(s) 615, 1196, 1815, 1862
BspANI GGCC 6 cut(s) 91, 154, 1784, 1828, 1883, 1888
BspCNI CTCAG 2 cut(s) 70, 1745
BspEI TCCGGA 1 cut(s) 1218
BspFNI CGCG 1 cut(s) 674
BspHI TCATGA 1 cut(s) 1290
BspLI GGNNCC 5 cut(s) 18, 751, 1250, 1419, 1878
BspMAI CTGCAG 1 cut(s) 316
BspPI GGATC 6 cut(s) 233, 935, 1210, 1229, 1243, 1256
BspT107I GGYRCC 2 cut(s) 1417, 1876
BspTNI GGTCTC 1 cut(s) 1268
BsrBI CCGCTC 2 cut(s) 615, 1196
BsrDI GCAATG 2 cut(s) 589, 914
BsrFI RCCGGY 4 cut(s) 1477, 1828, 1879, 1928
BsrGI TGTACA 1 cut(s) 1162
BsrI ACTGG 2 cut(s) 210, 1753
BssAI RCCGGY 4 cut(s) 1477, 1828, 1879, 1928
BssECI CCNNGG 4 cut(s) 188, 991, 1641, 1889
BssNAI GTATAC 1 cut(s) 1368
BssT1I CCWWGG 4 cut(s) 188, 991, 1641, 1889
Bst1107I GTATAC 1 cut(s) 1368
Bst2UI CCWGG 3 cut(s) 353, 1372, 1490
Bst4CI ACNGT 4 cut(s) 860, 1028, 1903, 1937
Bst6I CTCTTC 3 cut(s) 1278, 1359, 1438
BstAUI TGTACA 1 cut(s) 1162
BstC8I GCNNGC 4 cut(s) 1043, 1133, 1813, 1830
BstDEI CTNAG 4 cut(s) 78, 1409, 1427, 1732
BstDSI CCRYGG 2 cut(s) 188, 1641
BstENI CCTNNNNNAGG 1 cut(s) 1661
BstF5I GGATG 6 cut(s) 421, 726, 1204, 1345, 1444, 1921
BstFNI CGCG 1 cut(s) 674
BstH2I RGCGCY 1 cut(s) 1724
BstHHI GCGC 1 cut(s) 1723
BstMAI GTCTC 2 cut(s) 776, 1268
BstMCI CGRYCG 1 cut(s) 1884
BstMWI GCNNNNNNNGC 1 cut(s) 1894
BstNI CCWGG 3 cut(s) 353, 1372, 1490
BstNSI RCATGY 1 cut(s) 1687
BstSCI CCNGG 4 cut(s) 351, 1370, 1488, 1883
BstSFI CTRYAG 4 cut(s) 70, 312, 1902, 1933
BstUI CGCG 1 cut(s) 674
BstV1I GCAGC 2 cut(s) 326, 853
BstV2I GAAGAC 2 cut(s) 1409, 1531
BstX2I RGATCY 3 cut(s) 1215, 1248, 1333
BstXI CCANNNNNNTGG 1 cut(s) 1259
BstYI RGATCY 3 cut(s) 1215, 1248, 1333
BstZ17I GTATAC 1 cut(s) 1368
BstZI CGGCCG 1 cut(s) 1881
Bsu36I CCTNAGG 1 cut(s) 78
BsuI GTATCC 1 cut(s) 457
BsuRI GGCC 6 cut(s) 91, 154, 1784, 1828, 1883, 1888
BtgI CCRYGG 2 cut(s) 188, 1641
BtgZI GCGATG 1 cut(s) 793
BtsCI GGATG 6 cut(s) 421, 726, 1204, 1345, 1444, 1921
BtsIMutI CAGTG 1 cut(s) 1942
BtuMI TCGCGA 1 cut(s) 674
Cac8I GCNNGC 4 cut(s) 1043, 1133, 1813, 1830
CaiI CAGNNNCTG 1 cut(s) 686
CciI TCATGA 1 cut(s) 1290
CfoI GCGC 1 cut(s) 1723
Cfr10I RCCGGY 4 cut(s) 1477, 1828, 1879, 1928
Cfr13I GGNCC 3 cut(s) 17, 1480, 1886
CseI GACGC 1 cut(s) 1414
Csp6I GTAC 9 cut(s) 760, 840, 861, 1065, 1083, 1163, 1418, 1520, 1899
CviQI GTAC 9 cut(s) 760, 840, 861, 1065, 1083, 1163, 1418, 1520, 1899
DdeI CTNAG 4 cut(s) 78, 1409, 1427, 1732
DraI TTTAAA 1 cut(s) 433
EaeI YGGCCR 5 cut(s) 89, 152, 1782, 1826, 1881
EagI CGGCCG 1 cut(s) 1881
Eam1104I CTCTTC 3 cut(s) 1278, 1359, 1438
EarI CTCTTC 3 cut(s) 1278, 1359, 1438
EclXI CGGCCG 1 cut(s) 1881
Eco130I CCWWGG 4 cut(s) 188, 991, 1641, 1889
Eco31I GGTCTC 1 cut(s) 1268
Eco32I GATATC 1 cut(s) 988
Eco47I GGWCC 2 cut(s) 17, 1480
Eco52I CGGCCG 1 cut(s) 1881
Eco57I CTGAAG 2 cut(s) 159, 1493
Eco81I CCTNAGG 1 cut(s) 78
Eco88I CYCGRG 3 cut(s) 450, 1265, 1658
EcoNI CCTNNNNNAGG 1 cut(s) 1661
EcoRII CCWGG 3 cut(s) 351, 1370, 1488
EcoRV GATATC 1 cut(s) 988
EcoT14I CCWWGG 4 cut(s) 188, 991, 1641, 1889
EcoT22I ATGCAT 1 cut(s) 914
ErhI CCWWGG 4 cut(s) 188, 991, 1641, 1889
FaqI GGGAC 1 cut(s) 30
FbaI TGATCA 2 cut(s) 1582, 1867
FblI GTMKAC 1 cut(s) 1367
Fnu4HI GCNGC 3 cut(s) 315, 867, 1863
FokI GGATG 6 cut(s) 428, 713, 1211, 1352, 1451, 1908
Fsp4HI GCNGC 3 cut(s) 315, 867, 1863
FspBI CTAG 3 cut(s) 899, 1593, 1625
GlaI GCGC 1 cut(s) 1722
GluI GCNGC 3 cut(s) 315, 867, 1863
HaeII RGCGCY 1 cut(s) 1724
HaeIII GGCC 6 cut(s) 91, 154, 1784, 1828, 1883, 1888
HapII CCGG 7 cut(s) 165, 1219, 1478, 1829, 1880, 1884, 1929
HgaI GACGC 1 cut(s) 1414
HhaI GCGC 1 cut(s) 1723
Hin6I GCGC 1 cut(s) 1721
HinP1I GCGC 1 cut(s) 1721
HinfI GANTC 6 cut(s) 440, 463, 645, 683, 736, 830
HpaII CCGG 7 cut(s) 165, 1219, 1478, 1829, 1880, 1884, 1929
HphI GGTGA 1 cut(s) 1679
Hpy166II GTNNAC 2 cut(s) 1368, 1563
Hpy188I TCNGA 8 cut(s) 321, 329, 412, 578, 835, 1473, 1590, 1872
Hpy8I GTNNAC 2 cut(s) 1368, 1563
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 5 cut(s) 1264, 1273, 1641, 1657, 1867
HpyCH4III ACNGT 4 cut(s) 860, 1028, 1903, 1937
HpyCH4IV ACGT 2 cut(s) 519, 1613
HpyF10VI GCNNNNNNNGC 1 cut(s) 1894
HpyF3I CTNAG 4 cut(s) 78, 1409, 1427, 1732
HpySE526I ACGT 2 cut(s) 519, 1613
HspAI GCGC 1 cut(s) 1721
Kpn2I TCCGGA 1 cut(s) 1218
KpnI GGTACC 1 cut(s) 1421
KroI GCCGGC 1 cut(s) 1828
KroNI GCCGGC 1 cut(s) 1830
Ksp22I TGATCA 2 cut(s) 1582, 1867
LmnI GCTCC 1 cut(s) 749
Lsp1109I GCAGC 2 cut(s) 326, 853
LweI GCATC 4 cut(s) 816, 961, 1660, 1709
MaeI CTAG 3 cut(s) 899, 1593, 1625
MaeII ACGT 2 cut(s) 519, 1613
MaeIII GTNAC 4 cut(s) 208, 334, 1022, 1804
MbiI CCGCTC 2 cut(s) 615, 1196
MflI RGATCY 3 cut(s) 1215, 1248, 1333
MlsI TGGCCA 2 cut(s) 91, 154
MluCI AATT 8 cut(s) 148, 168, 389, 654, 884, 1057, 1243, 1694
MluNI TGGCCA 2 cut(s) 91, 154
MlyI GAGTC 2 cut(s) 654, 745
MmeI TCCRAC 2 cut(s) 727, 1293
Mox20I TGGCCA 2 cut(s) 91, 154
Mph1103I ATGCAT 1 cut(s) 914
MroI TCCGGA 1 cut(s) 1218
MroNI GCCGGC 1 cut(s) 1828
MroXI GAANNNNTTC 1 cut(s) 172
MscI TGGCCA 2 cut(s) 91, 154
MseI TTAA 5 cut(s) 432, 596, 711, 1073, 1716
Msp20I TGGCCA 2 cut(s) 91, 154
MspI CCGG 7 cut(s) 165, 1219, 1478, 1829, 1880, 1884, 1929
MspR9I CCNGG 4 cut(s) 353, 1372, 1490, 1885
Mva1269I GAATGC 1 cut(s) 912
MvaI CCWGG 3 cut(s) 353, 1372, 1490
MvnI CGCG 1 cut(s) 674
MwoI GCNNNNNNNGC 1 cut(s) 1894
NaeI GCCGGC 1 cut(s) 1830
NciI CCSGG 1 cut(s) 1885
NcoI CCATGG 2 cut(s) 188, 1641
NgoMIV GCCGGC 1 cut(s) 1828
NlaIV GGNNCC 5 cut(s) 18, 751, 1250, 1419, 1878
NmuCI GTSAC 1 cut(s) 334
NruI TCGCGA 1 cut(s) 674
NsiI ATGCAT 1 cut(s) 914
NspI RCATGY 1 cut(s) 1687
PaeR7I CTCGAG 2 cut(s) 1265, 1658
PagI TCATGA 1 cut(s) 1290
PctI GAATGC 1 cut(s) 912
PdiI GCCGGC 1 cut(s) 1830
PdmI GAANNNNTTC 1 cut(s) 172
PfeI GAWTC 4 cut(s) 440, 463, 683, 830
PkrI GCNGC 3 cut(s) 316, 868, 1864
PleI GAGTC 2 cut(s) 653, 744
PpsI GAGTC 2 cut(s) 653, 744
PsiI TTATAA 1 cut(s) 875
Psp6I CCWGG 3 cut(s) 351, 1370, 1488
PspGI CCWGG 3 cut(s) 351, 1370, 1488
PspN4I GGNNCC 5 cut(s) 18, 751, 1250, 1419, 1878
PspPI GGNCC 3 cut(s) 17, 1480, 1886
PstI CTGCAG 1 cut(s) 316
PstNI CAGNNNCTG 1 cut(s) 686
PsuI RGATCY 3 cut(s) 1215, 1248, 1333
RruI TCGCGA 1 cut(s) 674
RsaI GTAC 9 cut(s) 761, 841, 862, 1066, 1084, 1164, 1419, 1521, 1900
RsaNI GTAC 9 cut(s) 760, 840, 861, 1065, 1083, 1163, 1418, 1520, 1899
SaqAI TTAA 5 cut(s) 432, 596, 711, 1073, 1716
SatI GCNGC 3 cut(s) 315, 867, 1863
Sau96I GGNCC 3 cut(s) 17, 1480, 1886
ScaI AGTACT 1 cut(s) 862
SchI GAGTC 2 cut(s) 654, 745
ScrFI CCNGG 4 cut(s) 353, 1372, 1490, 1885
SfaNI GCATC 4 cut(s) 816, 961, 1660, 1709
SfcI CTRYAG 4 cut(s) 70, 312, 1902, 1933
Sfr274I CTCGAG 2 cut(s) 1265, 1658
SinI GGWCC 2 cut(s) 17, 1480
SlaI CTCGAG 2 cut(s) 1265, 1658
SmlI CTYRAG 6 cut(s) 126, 1051, 1265, 1658, 1792, 1851
SmoI CTYRAG 6 cut(s) 126, 1051, 1265, 1658, 1792, 1851
SpeI ACTAGT 2 cut(s) 1592, 1624
Sse9I AATT 8 cut(s) 148, 168, 389, 654, 884, 1057, 1243, 1694
SsiI CCGC 4 cut(s) 615, 1196, 1815, 1862
SspI AATATT 1 cut(s) 963
SspMI CTAG 3 cut(s) 899, 1593, 1625
StyD4I CCNGG 4 cut(s) 351, 1370, 1488, 1883
StyI CCWWGG 4 cut(s) 188, 991, 1641, 1889
TaaI ACNGT 4 cut(s) 860, 1028, 1903, 1937
TaiI ACGT 2 cut(s) 522, 1616
TaqI TCGA 7 cut(s) 97, 652, 799, 823, 1266, 1659, 1836
TaqII GACCGA 1 cut(s) 953
TasI AATT 8 cut(s) 148, 168, 389, 654, 884, 1057, 1243, 1694
TatI WGTACW 2 cut(s) 860, 1162
TauI GCSGC 1 cut(s) 1865
TfiI GAWTC 4 cut(s) 440, 463, 683, 830
Tru1I TTAA 5 cut(s) 432, 596, 711, 1073, 1716
Tru9I TTAA 5 cut(s) 432, 596, 711, 1073, 1716
TscAI CASTG 1 cut(s) 1942
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 2 cut(s) 314, 866
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 9 cut(s) 42, 204, 432, 453, 654, 1292, 1307, 1415, 1531
TspRI CASTG 1 cut(s) 1942
VpaK11BI GGWCC 2 cut(s) 17, 1480
XagI CCTNNNNNAGG 1 cut(s) 1661
XapI RAATTY 3 cut(s) 168, 389, 654
XbaI TCTAGA 1 cut(s) 898
XceI RCATGY 1 cut(s) 1687
XhoI CTCGAG 2 cut(s) 1265, 1658
XmiI GTMKAC 1 cut(s) 1367
XmnI GAANNNNTTC 1 cut(s) 172
XspI CTAG 3 cut(s) 899, 1593, 1625
ZrmI AGTACT 1 cut(s) 862
Zsp2I ATGCAT 1 cut(s) 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.