MD01G1222000.v1.1

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000119
Physical Location & Seq
Reverse (-)
31441696 .. 31446656
4961 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1222000.v1.1.491

Sequence Viewer

Length: 1893 bp
ATGGCTGGAAACGTCAAGGGATTAACTTCAGATATGGAGAACCAGGCAGAAGAGAAAACAGACAGAGAGGCCGGAGAACGTTCGAAACCAATGTGCAGCAGAGGCCTTACCTGGATAAAGAAGATTCGAAATGCGCAGCAGGGGCCTTACCTTCCAATATGGAGCAGAATATTTGTGCTATCATGCGTATTTGCTGTCTCTCTTGATCCTTTCTTCTTTTACGTTGTGGTCATCGATCAGGATAACAAGTGTTTTCAAATAGACAAAACGTTGGTTATTGTAGCTCTTCTTATGCGGTCGATCACGGATGTCATTTTCTTGGTGCATTTAATATGTGAAATCTGTGACGGTGTTCAAAATCCAAATCCAAAAACCCTAAAAAAAGGAGCCCCTTCGATGGTGGAGCAAACCGGGGGAAATTCAGATAAGAAAACGAAAATCAGAGAGTTGACTGATCAAGTTGCCATGAAAATAGCTCAAAAGATGCCGTGGTTATCTGTCTTTACTGTAATAGACTTTTTGGCTCTTCTTCCCCTCCCACAACTGCTAATAGGAGTTATTTTTTACACAATGAATGGCTCAGGATTTGTGGAACACAAAAACATTCTGAATTTTTTTCTTCTCGGTCAATATTTTCCGAGGATTTATCGAATCAACCTATCGGCCAAGGAATTCAAAATGACTAGTGGGATATGGATTAAGGGTCTATACAACATGTTTCTCTACATTCTTTCCAGCCACGTACTCGGAGCTTTTTGGTATTTTTTTTCTGTTCAACGAGAGTTAACTTGTTGGCAAGAGGCTTGTGTAAATCATAGTAAAGATCCCAGGGCATGTTTGAATACTTTCAACTGCGATGGTCTAAGTACTACTGCAAGAAATATAACATTTCTAAACGAGCATTGCCCGTTGGATACTCCAAATGGTGCTTCATCTCCATTTAACTTTGGAATATTTCTTGATTCCCTTCAGAATCAAAACACTGAGCAAATACTGTTCAGAAAGAAGTTCTTTTACTCCTTCTGGTGGGGGTTGCGAAATCTAAGTAATTTTGGGACTAATCTGATGACAAGTACATATGTGTTCGAAAACTTGTTTGCGGTTCTCATTTCTGTAATTGGCTTGCTACTGTTTTTATATCTCATTGGAAACGTACAGACTTTTATGCAGATGGAAGCTACAAAAACAGAAGAGCTGAGAGAAAAGATTAAGTTGAAGAAGCTAGACGTAAGGACATGGATGTCCAGAAATGAAATCCCTGATAATATGAAGGAAGAAATCTTGAGAAGCATAAAGCAAAAATTGAAACGACACATTGATGCTGATCTCCATCATTTTTTGTTCTATATTCTTCCTGTGAATATCAGAACATCTCTGAAACATTTTCTTTGCATGAAGACACTTAAGAAAGTAAAAAAGCTTGAAGATATGGATGTCAAAGTGTTGACGTTGATCTGCAACTATCTGAAGCCAGTGAGGTACACTGAGAACAGCTTCGTTTTTCGAATGGGTGATCCACTCGACTGCATGCTGTTCATTATCGAAGGGACAGTGTGGACCTACGGGTCGACTGATAGTCAAGCTGGGCAAGGAATCTCATCAATGGACACCAAGCCCCTCGGGAAAGGTGACTTTTACGGGGAAGAGCTTCTCGATTGCGCATCACACCGTTTCACCAAACTTCCAGTCTCCAGCAAACATGTCAAAAGTCAGACAAAAGTAGAAGCATTTGTGCTCATGGCCAAGGACTTGGAAACGGTAGTTTCCAAATCCCGGTTAAAGTGGGAGAAAAAGGAGAAGAAGGGTTCTCAATTGTTGGAGTCCGTGGCAGCTTCTACCATAGCATCAGCATTCCGTCTTCATCTCCGCAAAAACAAACGTGCACTACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

631

Amino Acids

72.38

Weight (kDa)

9.27

Isoelectric Point (pI)

35.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 74 - 392 4.9e-10 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1240, 1564
Acc16I TGCGCA 2 cut(s) 135, 1660
AccI GTMKAC 1 cut(s) 1568
AciI CCGC 3 cut(s) 295, 1100, 1867
AclI AACGTT 2 cut(s) 79, 269
AclWI GGATC 3 cut(s) 200, 818, 1508
AcoI YGGCCR 2 cut(s) 663, 1740
AcsI RAATTY 3 cut(s) 418, 610, 671
AcuI CTGAAG 3 cut(s) 12, 953, 1487
AfaI GTAC 5 cut(s) 744, 868, 1075, 1155, 1481
AfiI CCNNNNNNNGG 3 cut(s) 397, 1026, 1773
AflII CTTAAG 1 cut(s) 1403
AflIII ACRYGT 2 cut(s) 714, 1699
AgsI TTSAA 9 cut(s) 257, 356, 676, 776, 841, 850, 1216, 1306, 1424
AhdI GACNNNNNGTC 1 cut(s) 1575
AhlI ACTAGT 1 cut(s) 683
AjnI CCWGG 3 cut(s) 42, 110, 827
AjuI GAANNNNNNNTTGG 2 cut(s) 913, 945
Alw21I GWGCWC 2 cut(s) 1737, 1885
Alw26I GTCTC 2 cut(s) 202, 1693
Alw44I GTGCAC 1 cut(s) 1881
AlwI GGATC 3 cut(s) 200, 818, 1508
Ama87I CYCGRG 1 cut(s) 1619
AoxI GGCC 5 cut(s) 69, 103, 143, 663, 1740
ApaLI GTGCAC 1 cut(s) 1881
ApeKI GCWGC 3 cut(s) 96, 136, 1829
ApoI RAATTY 3 cut(s) 418, 610, 671
ArsI GACNNNNNNTTYG 2 cut(s) 1671, 1703
Asp700I GAANNNNTTC 3 cut(s) 845, 1493, 1647
AspLEI GCGC 2 cut(s) 136, 1661
AspS9I GGNCC 2 cut(s) 143, 1557
AsuC2I CCSGG 2 cut(s) 412, 1774
AsuHPI GGTGA 3 cut(s) 1523, 1640, 1666
AsuII TTCGAA 4 cut(s) 83, 127, 1086, 1504
AvaI CYCGRG 1 cut(s) 1619
AvaII GGWCC 1 cut(s) 1557
BaeGI GKGCMC 1 cut(s) 1885
BalI TGGCCA 1 cut(s) 1742
BanII GRGCYC 1 cut(s) 391
BarI GAAGNNNNNNTAC 2 cut(s) 998, 1030
BbsI GAAGAC 2 cut(s) 1403, 1850
Bbv12I GWGCWC 2 cut(s) 1737, 1885
BbvI GCAGC 3 cut(s) 108, 148, 1841
BccI CCATC 4 cut(s) 391, 851, 1165, 1338
BceAI ACGGC 1 cut(s) 472
BciT130I CCWGG 3 cut(s) 44, 112, 829
BciVI GTATCC 1 cut(s) 907
BclI TGATCA 1 cut(s) 454
BcnI CCSGG 2 cut(s) 412, 1774
BcoDI GTCTC 2 cut(s) 202, 1693
BcuI ACTAGT 1 cut(s) 683
BfaI CTAG 2 cut(s) 684, 1223
BfrI CTTAAG 1 cut(s) 1403
BfuI GTATCC 1 cut(s) 907
BisI GCNGC 3 cut(s) 97, 137, 1830
BlsI GCNGC 3 cut(s) 98, 138, 1831
BmcAI AGTACT 1 cut(s) 868
Bme1390I CCNGG 5 cut(s) 44, 112, 412, 829, 1774
Bme18I GGWCC 1 cut(s) 1557
BmeRI GACNNNNNGTC 1 cut(s) 1575
BmeT110I CYCGRG 1 cut(s) 1619
BmgT120I GGNCC 2 cut(s) 143, 1557
BmiI GGNNCC 2 cut(s) 144, 388
BmrFI CCNGG 5 cut(s) 44, 112, 412, 829, 1774
BmsI GCATC 4 cut(s) 474, 1309, 1670, 1853
BpiI GAAGAC 2 cut(s) 1403, 1850
BpmI CTGGAG 1 cut(s) 1675
Bpu10I CCTNAGC 1 cut(s) 580
Bpu14I TTCGAA 4 cut(s) 83, 127, 1086, 1504
BpuEI CTTGAG 1 cut(s) 1303
BpuMI CCSGG 2 cut(s) 412, 1774
Bsa29I ATCGAT 1 cut(s) 234
BsaAI YACGTR 1 cut(s) 742
BsaBI GATNNNNATC 2 cut(s) 1323, 1329
BsaJI CCNNGG 9 cut(s) 411, 488, 638, 666, 827, 828, 1618, 1743, 1824
Bsc4I CCNNNNNNNGG 3 cut(s) 397, 1026, 1773
Bse1I ACTGG 2 cut(s) 1472, 1685
Bse3DI GCAATG 1 cut(s) 901
Bse8I GATNNNNATC 2 cut(s) 1323, 1329
BseBI CCWGG 3 cut(s) 44, 112, 829
BseCI ATCGAT 1 cut(s) 234
BseDI CCNNGG 9 cut(s) 411, 488, 638, 666, 827, 828, 1618, 1743, 1824
BseGI GGATG 3 cut(s) 313, 1245, 1438
BseJI GATNNNNATC 2 cut(s) 1323, 1329
BseLI CCNNNNNNNGG 3 cut(s) 397, 1026, 1773
BseMI GCAATG 1 cut(s) 901
BseMII CTCAG 4 cut(s) 594, 975, 1187, 1476
BseNI ACTGG 2 cut(s) 1472, 1685
BseSI GKGCMC 1 cut(s) 1885
BseXI GCAGC 3 cut(s) 108, 148, 1841
BseYI CCCAGC 1 cut(s) 1583
BsgI GTGCAG 1 cut(s) 115
Bsh1285I CGRYCG 1 cut(s) 299
BshFI GGCC 5 cut(s) 71, 105, 145, 665, 1742
BshVI ATCGAT 1 cut(s) 234
BsiEI CGRYCG 1 cut(s) 299
BsiHKAI GWGCWC 2 cut(s) 1737, 1885
BsiHKCI CYCGRG 1 cut(s) 1619
BsiSI CCGG 3 cut(s) 72, 411, 1774
BslFI GGGAC 2 cut(s) 1069, 1561
BslI CCNNNNNNNGG 3 cut(s) 397, 1026, 1773
BsmAI GTCTC 2 cut(s) 202, 1693
BsmFI GGGAC 2 cut(s) 1069, 1561
BsmI GAATGC 1 cut(s) 1850
BsnI GGCC 5 cut(s) 71, 105, 145, 665, 1742
BsoBI CYCGRG 1 cut(s) 1619
Bsp119I TTCGAA 4 cut(s) 83, 127, 1086, 1504
Bsp1286I GDGCHC 3 cut(s) 391, 1737, 1885
Bsp143I GATC 8 cut(s) 205, 235, 300, 454, 823, 1324, 1452, 1513
BspACI CCGC 3 cut(s) 295, 1100, 1867
BspANI GGCC 5 cut(s) 71, 105, 145, 665, 1742
BspCNI CTCAG 4 cut(s) 593, 976, 1188, 1477
BspDI ATCGAT 1 cut(s) 234
BspLI GGNNCC 2 cut(s) 144, 388
BspPI GGATC 3 cut(s) 200, 818, 1508
BspQI GCTCTTC 4 cut(s) 291, 531, 1185, 1638
BspT104I TTCGAA 4 cut(s) 83, 127, 1086, 1504
BspTI CTTAAG 1 cut(s) 1403
BsrDI GCAATG 1 cut(s) 901
BsrI ACTGG 2 cut(s) 1472, 1685
BssECI CCNNGG 9 cut(s) 411, 488, 638, 666, 827, 828, 1618, 1743, 1824
BssMI GATC 8 cut(s) 205, 235, 300, 454, 823, 1324, 1452, 1513
BssT1I CCWWGG 2 cut(s) 666, 1743
Bst2UI CCWGG 3 cut(s) 44, 112, 829
Bst4CI ACNGT 7 cut(s) 350, 508, 996, 1131, 1552, 1670, 1759
Bst6I CTCTTC 5 cut(s) 45, 291, 531, 1185, 1638
BstAFI CTTAAG 1 cut(s) 1403
BstBAI YACGTR 1 cut(s) 742
BstBI TTCGAA 4 cut(s) 83, 127, 1086, 1504
BstC8I GCNNGC 2 cut(s) 1124, 1529
BstDEI CTNAG 6 cut(s) 580, 863, 984, 1043, 1196, 1485
BstDSI CCRYGG 2 cut(s) 488, 1824
BstF5I GGATG 3 cut(s) 313, 1245, 1438
BstHHI GCGC 2 cut(s) 136, 1661
BstKTI GATC 8 cut(s) 208, 238, 303, 457, 826, 1327, 1455, 1516
BstMAI GTCTC 2 cut(s) 202, 1693
BstMBI GATC 8 cut(s) 205, 235, 300, 454, 823, 1324, 1452, 1513
BstMCI CGRYCG 1 cut(s) 299
BstMWI GCNNNNNNNGC 2 cut(s) 102, 142
BstNI CCWGG 3 cut(s) 44, 112, 829
BstNSI RCATGY 4 cut(s) 718, 837, 1531, 1703
BstSCI CCNGG 5 cut(s) 42, 110, 410, 827, 1772
BstSLI GKGCMC 1 cut(s) 1885
BstV1I GCAGC 3 cut(s) 108, 148, 1841
BstV2I GAAGAC 2 cut(s) 1403, 1850
BstX2I RGATCY 1 cut(s) 823
BstXI CCANNNNNNTGG 1 cut(s) 1750
BstYI RGATCY 1 cut(s) 823
Bsu15I ATCGAT 1 cut(s) 234
BsuI GTATCC 1 cut(s) 907
BsuRI GGCC 5 cut(s) 71, 105, 145, 665, 1742
BsuTUI ATCGAT 1 cut(s) 234
BtgI CCRYGG 2 cut(s) 488, 1824
BtgZI GCGATG 1 cut(s) 870
BtsCI GGATG 3 cut(s) 313, 1245, 1438
BtsIMutI CAGTG 4 cut(s) 981, 1479, 1482, 1557
Cac8I GCNNGC 2 cut(s) 1124, 1529
CfoI GCGC 2 cut(s) 136, 1661
Cfr13I GGNCC 2 cut(s) 143, 1557
ClaI ATCGAT 1 cut(s) 234
Csp6I GTAC 5 cut(s) 743, 867, 1074, 1154, 1480
CviAII CATG 9 cut(s) 183, 466, 715, 834, 1236, 1393, 1528, 1700, 1738
CviQI GTAC 5 cut(s) 743, 867, 1074, 1154, 1480
DdeI CTNAG 6 cut(s) 580, 863, 984, 1043, 1196, 1485
DpnI GATC 8 cut(s) 207, 237, 302, 456, 825, 1326, 1454, 1515
DpnII GATC 8 cut(s) 205, 235, 300, 454, 823, 1324, 1452, 1513
DrdI GACNNNNNNGTC 2 cut(s) 1240, 1564
DriI GACNNNNNGTC 1 cut(s) 1575
DseDI GACNNNNNNGTC 2 cut(s) 1240, 1564
EaeI YGGCCR 2 cut(s) 663, 1740
Eam1104I CTCTTC 5 cut(s) 45, 291, 531, 1185, 1638
Eam1105I GACNNNNNGTC 1 cut(s) 1575
EarI CTCTTC 5 cut(s) 45, 291, 531, 1185, 1638
Eco130I CCWWGG 2 cut(s) 666, 1743
Eco147I AGGCCT 1 cut(s) 105
Eco24I GRGCYC 1 cut(s) 391
Eco47I GGWCC 1 cut(s) 1557
Eco57I CTGAAG 3 cut(s) 12, 953, 1487
Eco88I CYCGRG 1 cut(s) 1619
EcoO109I RGGNCCY 1 cut(s) 143
EcoRI GAATTC 1 cut(s) 671
EcoRII CCWGG 3 cut(s) 42, 110, 827
EcoT14I CCWWGG 2 cut(s) 666, 1743
EcoT38I GRGCYC 1 cut(s) 391
ErhI CCWWGG 2 cut(s) 666, 1743
FaeI CATG 9 cut(s) 186, 469, 718, 837, 1239, 1396, 1531, 1703, 1741
FalI AAGNNNNNCTT 2 cut(s) 995, 1027
FaqI GGGAC 2 cut(s) 1069, 1561
FatI CATG 9 cut(s) 182, 465, 714, 833, 1235, 1392, 1527, 1699, 1737
FauNDI CATATG 1 cut(s) 1078
FbaI TGATCA 1 cut(s) 454
FblI GTMKAC 1 cut(s) 1568
Fnu4HI GCNGC 3 cut(s) 97, 137, 1830
FokI GGATG 3 cut(s) 320, 1252, 1445
FriOI GRGCYC 1 cut(s) 391
Fsp4HI GCNGC 3 cut(s) 97, 137, 1830
FspBI CTAG 2 cut(s) 684, 1223
FspI TGCGCA 2 cut(s) 135, 1660
GlaI GCGC 2 cut(s) 135, 1660
GluI GCNGC 3 cut(s) 97, 137, 1830
GsaI CCCAGC 1 cut(s) 1587
GsuI CTGGAG 1 cut(s) 1675
HaeIII GGCC 5 cut(s) 71, 105, 145, 665, 1742
HapII CCGG 3 cut(s) 72, 411, 1774
HhaI GCGC 2 cut(s) 136, 1661
Hin1II CATG 9 cut(s) 186, 469, 718, 837, 1239, 1396, 1531, 1703, 1741
Hin6I GCGC 2 cut(s) 134, 1659
HinP1I GCGC 2 cut(s) 134, 1659
HincII GTYRAC 4 cut(s) 450, 786, 1446, 1569
HindII GTYRAC 4 cut(s) 450, 786, 1446, 1569
HindIII AAGCTT 1 cut(s) 1418
HinfI GANTC 6 cut(s) 124, 651, 962, 973, 1593, 1820
HpaI GTTAAC 1 cut(s) 786
HpaII CCGG 3 cut(s) 72, 411, 1774
HphI GGTGA 3 cut(s) 1523, 1640, 1666
Hpy166II GTNNAC 7 cut(s) 450, 786, 1446, 1482, 1557, 1569, 1883
Hpy188III TCNNGA 8 cut(s) 203, 239, 582, 959, 1245, 1282, 1621, 1652
Hpy8I GTNNAC 7 cut(s) 450, 786, 1446, 1482, 1557, 1569, 1883
HpyAV CCTTC 7 cut(s) 161, 402, 977, 1030, 1264, 1538, 1795
HpyCH4III ACNGT 7 cut(s) 350, 508, 996, 1131, 1552, 1670, 1759
HpyCH4IV ACGT 9 cut(s) 12, 79, 222, 269, 741, 1152, 1227, 1448, 1879
HpyCH4V TGCA 8 cut(s) 96, 325, 875, 1168, 1392, 1458, 1527, 1883
HpyF10VI GCNNNNNNNGC 2 cut(s) 102, 142
HpyF3I CTNAG 6 cut(s) 580, 863, 984, 1043, 1196, 1485
HpySE526I ACGT 9 cut(s) 12, 79, 222, 269, 741, 1152, 1227, 1448, 1879
Hsp92II CATG 9 cut(s) 186, 469, 718, 837, 1239, 1396, 1531, 1703, 1741
HspAI GCGC 2 cut(s) 134, 1659
Ksp22I TGATCA 1 cut(s) 454
KspAI GTTAAC 1 cut(s) 786
Kzo9I GATC 8 cut(s) 205, 235, 300, 454, 823, 1324, 1452, 1513
LguI GCTCTTC 4 cut(s) 291, 531, 1185, 1638
LmnI GCTCC 4 cut(s) 162, 386, 403, 749
Lsp1109I GCAGC 3 cut(s) 108, 148, 1841
LweI GCATC 4 cut(s) 474, 1309, 1670, 1853
MaeI CTAG 2 cut(s) 684, 1223
MaeII ACGT 9 cut(s) 12, 79, 222, 269, 741, 1152, 1227, 1448, 1879
MaeIII GTNAC 2 cut(s) 344, 1628
MalI GATC 8 cut(s) 207, 237, 302, 456, 825, 1326, 1454, 1515
MboI GATC 8 cut(s) 205, 235, 300, 454, 823, 1324, 1452, 1513
MfeI CAATTG 1 cut(s) 1811
MflI RGATCY 1 cut(s) 823
MhlI GDGCHC 3 cut(s) 391, 1737, 1885
MlsI TGGCCA 1 cut(s) 1742
MluCI AATT 7 cut(s) 418, 610, 671, 1048, 1116, 1301, 1811
MluNI TGGCCA 1 cut(s) 1742
MlyI GAGTC 1 cut(s) 1829
MmeI TCCRAC 2 cut(s) 891, 1797
MnlI CCTC 7 cut(s) 61, 95, 545, 633, 793, 1470, 1628
Mox20I TGGCCA 1 cut(s) 1742
MroXI GAANNNNTTC 3 cut(s) 845, 1493, 1647
MscI TGGCCA 1 cut(s) 1742
MseI TTAA 8 cut(s) 23, 329, 699, 785, 942, 1209, 1404, 1778
MslI CAYNNNNRTG 1 cut(s) 1317
Msp20I TGGCCA 1 cut(s) 1742
MspCI CTTAAG 1 cut(s) 1403
MspI CCGG 3 cut(s) 72, 411, 1774
MspR9I CCNGG 5 cut(s) 44, 112, 412, 829, 1774
MunI CAATTG 1 cut(s) 1811
Mva1269I GAATGC 1 cut(s) 1850
MvaI CCWGG 3 cut(s) 44, 112, 829
MwoI GCNNNNNNNGC 2 cut(s) 102, 142
NciI CCSGG 2 cut(s) 412, 1774
NdeI CATATG 1 cut(s) 1078
NdeII GATC 8 cut(s) 205, 235, 300, 454, 823, 1324, 1452, 1513
NlaIII CATG 9 cut(s) 186, 469, 718, 837, 1239, 1396, 1531, 1703, 1741
NlaIV GGNNCC 2 cut(s) 144, 388
NmuCI GTSAC 2 cut(s) 344, 1628
NsbI TGCGCA 2 cut(s) 135, 1660
NspI RCATGY 4 cut(s) 718, 837, 1531, 1703
NspV TTCGAA 4 cut(s) 83, 127, 1086, 1504
PaeI GCATGC 1 cut(s) 1531
PasI CCCWGGG 1 cut(s) 828
PceI AGGCCT 1 cut(s) 105
PciI ACATGT 2 cut(s) 714, 1699
PciSI GCTCTTC 4 cut(s) 291, 531, 1185, 1638
PctI GAATGC 1 cut(s) 1850
PdmI GAANNNNTTC 3 cut(s) 845, 1493, 1647
PfeI GAWTC 5 cut(s) 124, 651, 962, 973, 1593
PkrI GCNGC 3 cut(s) 98, 138, 1831
PleI GAGTC 1 cut(s) 1828
PpsI GAGTC 1 cut(s) 1828
Ppu21I YACGTR 1 cut(s) 742
PscI ACATGT 2 cut(s) 714, 1699
Psp1406I AACGTT 2 cut(s) 79, 269
Psp6I CCWGG 3 cut(s) 42, 110, 827
PspFI CCCAGC 1 cut(s) 1583
PspGI CCWGG 3 cut(s) 42, 110, 827
PspN4I GGNNCC 2 cut(s) 144, 388
PspPI GGNCC 2 cut(s) 143, 1557
PsuI RGATCY 1 cut(s) 823
RsaI GTAC 5 cut(s) 744, 868, 1075, 1155, 1481
RsaNI GTAC 5 cut(s) 743, 867, 1074, 1154, 1480
RseI CAYNNNNRTG 1 cut(s) 1317
SalI GTCGAC 1 cut(s) 1567
SapI GCTCTTC 4 cut(s) 291, 531, 1185, 1638
SaqAI TTAA 8 cut(s) 23, 329, 699, 785, 942, 1209, 1404, 1778
SatI GCNGC 3 cut(s) 97, 137, 1830
Sau3AI GATC 8 cut(s) 205, 235, 300, 454, 823, 1324, 1452, 1513
Sau96I GGNCC 2 cut(s) 143, 1557
ScaI AGTACT 1 cut(s) 868
SchI GAGTC 1 cut(s) 1829
ScrFI CCNGG 5 cut(s) 44, 112, 412, 829, 1774
SduI GDGCHC 3 cut(s) 391, 1737, 1885
SfaNI GCATC 4 cut(s) 474, 1309, 1670, 1853
SfuI TTCGAA 4 cut(s) 83, 127, 1086, 1504
SinI GGWCC 1 cut(s) 1557
SmiMI CAYNNNNRTG 1 cut(s) 1317
SmlI CTYRAG 2 cut(s) 1282, 1403
SmoI CTYRAG 2 cut(s) 1282, 1403
SpeI ACTAGT 1 cut(s) 683
SphI GCATGC 1 cut(s) 1531
Sse9I AATT 7 cut(s) 418, 610, 671, 1048, 1116, 1301, 1811
SseBI AGGCCT 1 cut(s) 105
SsiI CCGC 3 cut(s) 295, 1100, 1867
SspI AATATT 3 cut(s) 171, 632, 954
SspMI CTAG 2 cut(s) 684, 1223
StuI AGGCCT 1 cut(s) 105
StyD4I CCNGG 5 cut(s) 42, 110, 410, 827, 1772
StyI CCWWGG 2 cut(s) 666, 1743
TaaI ACNGT 7 cut(s) 350, 508, 996, 1131, 1552, 1670, 1759
TaiI ACGT 9 cut(s) 15, 82, 225, 272, 744, 1155, 1230, 1451, 1882
TaqII GACCGA 1 cut(s) 614
TasI AATT 7 cut(s) 418, 610, 671, 1048, 1116, 1301, 1811
TatI WGTACW 2 cut(s) 866, 1073
TfiI GAWTC 5 cut(s) 124, 651, 962, 973, 1593
Tru1I TTAA 8 cut(s) 23, 329, 699, 785, 942, 1209, 1404, 1778
Tru9I TTAA 8 cut(s) 23, 329, 699, 785, 942, 1209, 1404, 1778
TscAI CASTG 4 cut(s) 988, 1479, 1489, 1557
TseFI GTSAC 2 cut(s) 344, 1628
TseI GCWGC 3 cut(s) 96, 136, 1829
Tsp45I GTSAC 2 cut(s) 344, 1628
TspDTI ATGAA 8 cut(s) 482, 587, 921, 1266, 1283, 1409, 1525, 1850
TspGWI ACGGA 3 cut(s) 320, 1813, 1844
TspRI CASTG 4 cut(s) 988, 1479, 1489, 1557
Vha464I CTTAAG 1 cut(s) 1403
VneI GTGCAC 1 cut(s) 1881
VpaK11BI GGWCC 1 cut(s) 1557
XapI RAATTY 3 cut(s) 418, 610, 671
XceI RCATGY 4 cut(s) 718, 837, 1531, 1703
XmiI GTMKAC 1 cut(s) 1568
XmnI GAANNNNTTC 3 cut(s) 845, 1493, 1647
XspI CTAG 2 cut(s) 684, 1223
ZrmI AGTACT 1 cut(s) 868
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.