Rmu_sc0006872.1_g000009

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006872.1
OG0000119
Physical Location & Seq
Reverse (-)
51151 .. 51618
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006872.1_g000009.1.cds

Sequence Viewer

Length: 468 bp
atgatgtgcgactatctgaagccggtgaattacccagagaataccttggtttttcagatgggagaaccatttgatcgaatggtcttcattacagaagggcttatgtggacttacacgactgctactgagagtagtcattatggaaaagcaacagaaccggctacttctccatccatggataccaacttcctcaagaagggtgattcttatggacacgcgcttctgcagtttgcatcatcatatcttgcggcactccctacctcgaacgcaaacgtccggtgtcacacaagggttgaggcgtttgttctcatggccaaggacttgaaaaacatagtaactaaatgcgaacatttgtggcctttcgactacgatgcttctaaagatgaggaggcggataaggtgacaccactgggcgggcagttgccaaagaagtgtgtatcaacatcgaccactggcaaccgtgggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

155

Amino Acids

17.26

Weight (kDa)

5.77

Isoelectric Point (pI)

36.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 218
AciI CCGC 3 cut(s) 248, 392, 414
AcoI YGGCCR 1 cut(s) 312
AcuI CTGAAG 1 cut(s) 38
AfiI CCNNNNNNNGG 2 cut(s) 196, 413
AgsI TTSAA 1 cut(s) 325
AoxI GGCC 2 cut(s) 312, 356
AspLEI GCGC 1 cut(s) 220
AsuHPI GGTGA 3 cut(s) 37, 212, 412
BalI TGGCCA 1 cut(s) 314
BbsI GAAGAC 1 cut(s) 76
BccI CCATC 2 cut(s) 52, 178
BcgI CGANNNNNNTGC 2 cut(s) 353, 387
BciVI GTATCC 1 cut(s) 172
BfmI CTRYAG 1 cut(s) 224
BfuI GTATCC 1 cut(s) 172
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
BmrI ACTGGG 1 cut(s) 419
BmsI GCATC 2 cut(s) 242, 361
BmuI ACTGGG 1 cut(s) 419
BpiI GAAGAC 1 cut(s) 76
BpuEI CTTGAG 1 cut(s) 176
BsaJI CCNNGG 4 cut(s) 45, 174, 315, 460
BsaWI WCCGGW 1 cut(s) 276
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 413
Bse118I RCCGGY 2 cut(s) 22, 157
Bse1I ACTGG 2 cut(s) 414, 457
BseDI CCNNGG 4 cut(s) 45, 174, 315, 460
BseGI GGATG 1 cut(s) 170
BseLI CCNNNNNNNGG 2 cut(s) 196, 413
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 2 cut(s) 414, 457
BseRI GAGGAG 1 cut(s) 401
Bsh1236I CGCG 1 cut(s) 218
BshFI GGCC 2 cut(s) 314, 358
BsiSI CCGG 3 cut(s) 23, 158, 277
BslI CCNNNNNNNGG 2 cut(s) 196, 413
BsnI GGCC 2 cut(s) 314, 358
Bsp143I GATC 1 cut(s) 73
Bsp19I CCATGG 1 cut(s) 174
BspACI CCGC 3 cut(s) 248, 392, 414
BspANI GGCC 2 cut(s) 314, 358
BspCNI CTCAG 1 cut(s) 118
BspFNI CGCG 1 cut(s) 218
BspMAI CTGCAG 1 cut(s) 228
BsrFI RCCGGY 2 cut(s) 22, 157
BsrI ACTGG 2 cut(s) 414, 457
BssAI RCCGGY 2 cut(s) 22, 157
BssECI CCNNGG 4 cut(s) 45, 174, 315, 460
BssMI GATC 1 cut(s) 73
BssT1I CCWWGG 3 cut(s) 45, 174, 315
Bst4CI ACNGT 1 cut(s) 461
BstC8I GCNNGC 1 cut(s) 416
BstDEI CTNAG 1 cut(s) 126
BstDSI CCRYGG 2 cut(s) 174, 460
BstENI CCTNNNNNAGG 1 cut(s) 194
BstF5I GGATG 1 cut(s) 170
BstFNI CGCG 1 cut(s) 218
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstSFI CTRYAG 1 cut(s) 224
BstUI CGCG 1 cut(s) 218
BstV2I GAAGAC 1 cut(s) 76
BsuI GTATCC 1 cut(s) 172
BsuRI GGCC 2 cut(s) 314, 358
BtgI CCRYGG 2 cut(s) 174, 460
BtsCI GGATG 1 cut(s) 170
BtsIMutI CAGTG 2 cut(s) 407, 450
Cac8I GCNNGC 1 cut(s) 416
CfoI GCGC 1 cut(s) 220
Cfr10I RCCGGY 2 cut(s) 22, 157
CviAII CATG 2 cut(s) 175, 310
CviJI RGCY 5 cut(s) 22, 100, 161, 314, 358
CviKI_1 RGCY 5 cut(s) 22, 100, 161, 314, 358
DdeI CTNAG 1 cut(s) 126
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 312
EciI GGCGGA 1 cut(s) 407
Eco130I CCWWGG 3 cut(s) 45, 174, 315
Eco57I CTGAAG 1 cut(s) 38
EcoNI CCTNNNNNAGG 1 cut(s) 194
EcoT14I CCWWGG 3 cut(s) 45, 174, 315
ErhI CCWWGG 3 cut(s) 45, 174, 315
FaeI CATG 2 cut(s) 178, 313
FaiI YATR 7 cut(s) 104, 141, 176, 210, 241, 311, 332
FatI CATG 2 cut(s) 174, 309
FauI CCCGC 1 cut(s) 407
Fnu4HI GCNGC 1 cut(s) 249
FokI GGATG 1 cut(s) 157
Fsp4HI GCNGC 1 cut(s) 249
GlaI GCGC 1 cut(s) 219
GluI GCNGC 1 cut(s) 249
HaeIII GGCC 2 cut(s) 314, 358
HapII CCGG 3 cut(s) 23, 158, 277
HhaI GCGC 1 cut(s) 220
Hin1II CATG 2 cut(s) 178, 313
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HinfI GANTC 1 cut(s) 203
HpaII CCGG 3 cut(s) 23, 158, 277
HphI GGTGA 3 cut(s) 37, 212, 412
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 2 cut(s) 18, 57
Hpy188III TCNNGA 1 cut(s) 193
Hpy8I GTNNAC 1 cut(s) 108
HpyAV CCTTC 2 cut(s) 89, 190
HpyCH4III ACNGT 1 cut(s) 461
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 2 cut(s) 226, 233
HpyF3I CTNAG 1 cut(s) 126
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 2 cut(s) 178, 313
HspAI GCGC 1 cut(s) 218
Kzo9I GATC 1 cut(s) 73
LpnPI CCDG 6 cut(s) 36, 48, 171, 290, 395, 438
LweI GCATC 2 cut(s) 242, 361
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 3 cut(s) 281, 334, 400
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 1 cut(s) 76
MlsI TGGCCA 1 cut(s) 314
MluCI AATT 1 cut(s) 28
MluNI TGGCCA 1 cut(s) 314
MnlI CCTC 5 cut(s) 200, 271, 289, 379, 382
Mox20I TGGCCA 1 cut(s) 314
MscI TGGCCA 1 cut(s) 314
Msp20I TGGCCA 1 cut(s) 314
MspI CCGG 3 cut(s) 23, 158, 277
MvnI CGCG 1 cut(s) 218
NcoI CCATGG 1 cut(s) 174
NdeII GATC 1 cut(s) 73
NlaIII CATG 2 cut(s) 178, 313
NmuCI GTSAC 2 cut(s) 281, 400
PfeI GAWTC 1 cut(s) 203
PkrI GCNGC 1 cut(s) 250
PstI CTGCAG 1 cut(s) 228
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 1 cut(s) 73
SetI ASST 4 cut(s) 47, 263, 276, 402
SfaNI GCATC 2 cut(s) 242, 361
SfcI CTRYAG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 1 cut(s) 28
SsiI CCGC 3 cut(s) 248, 392, 414
StyI CCWWGG 3 cut(s) 45, 174, 315
TaaI ACNGT 1 cut(s) 461
TaiI ACGT 1 cut(s) 276
TaqI TCGA 4 cut(s) 76, 263, 363, 446
TasI AATT 1 cut(s) 28
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 1 cut(s) 203
TscAI CASTG 2 cut(s) 414, 457
TseFI GTSAC 2 cut(s) 281, 400
Tsp45I GTSAC 2 cut(s) 281, 400
TspDTI ATGAA 1 cut(s) 76
TspRI CASTG 2 cut(s) 414, 457
XagI CCTNNNNNAGG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.