Rh1AG450700

Belongs to the spermidine spermine synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0018087
Physical Location & Seq
Forward (+)
67099408 .. 67100020
613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG450700.1

Sequence Viewer

Length: 345 bp
ATGGCAGAGAGTATGTGGCTCCATACACATCTTATTGAAGATATGATCTCTGTTTGCCGTCTAACATTCAAGGGGTCAGTCAACTATGCATGGGCGAGTGTTCCTACATATCCAAGTGGTGTTATAGGTTTTCTGCTATGCTCAACAGAAGGGCCTCCTGTTGATTTTAAAAATCCAGTCAACTCCATTGAGAAGTTGGAAGGAGCTGTCAAACACAGAAGAGAACTTCGGTTCTATAACTCTGAGATGCACTCAGCTGCCTTTGCCGTGCCTGCTTTTTTGAGGAAGGAGGTGAGCGCACTCCGTGATTCTTCAACTCCAGCAAGACAAAGTGGCTTGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00330 ko00410 ko00480 ko01100 map00270 map00330 map00410 map00480 map01100
Pfam Domains
Protein Families
Spermine_synt_N Spermine_synth

Protein Analysis

114

Amino Acids

12.67

Weight (kDa)

7.84

Isoelectric Point (pI)

61.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Spermine_synth PF01564 2 - 58 1.3e-09 Spermine/spermidine synthase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018087)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g31860
malus_domestica MD07G1292400.v1.1
prunus_persica Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1
pyrus_communis pycom01g23060
rosa_laevigata RLG00000026245
rosa_rugosa Rorug01G0427500 Rorug01G0427700
rosa_samantha Rh1AG450700 Rh1BG406900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 305
AgsI TTSAA 3 cut(s) 38, 70, 315
AluBI AGCT 2 cut(s) 206, 257
AluI AGCT 2 cut(s) 206, 257
AoxI GGCC 1 cut(s) 152
ApeKI GCWGC 1 cut(s) 257
AspLEI GCGC 1 cut(s) 299
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 304
BbvI GCAGC 1 cut(s) 244
BceAI ACGGC 2 cut(s) 42, 251
BfaI CTAG 1 cut(s) 343
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 20
BmsI GCATC 1 cut(s) 237
BplI GAGNNNNNCTC 2 cut(s) 236, 268
BpmI CTGGAG 1 cut(s) 303
Bse1I ACTGG 1 cut(s) 176
BseMII CTCAG 2 cut(s) 234, 267
BseNI ACTGG 1 cut(s) 176
BseXI GCAGC 1 cut(s) 244
BshFI GGCC 1 cut(s) 154
BsnI GGCC 1 cut(s) 154
Bsp143I GATC 1 cut(s) 45
BspANI GGCC 1 cut(s) 154
BspCNI CTCAG 2 cut(s) 235, 266
BspLI GGNNCC 1 cut(s) 20
BsrI ACTGG 1 cut(s) 176
BssMI GATC 1 cut(s) 45
Bst6I CTCTTC 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 273
BstDEI CTNAG 2 cut(s) 243, 253
BstHHI GCGC 1 cut(s) 299
BstKTI GATC 1 cut(s) 48
BstMBI GATC 1 cut(s) 45
BstMWI GCNNNNNNNGC 2 cut(s) 263, 272
BstV1I GCAGC 1 cut(s) 244
BsuRI GGCC 1 cut(s) 154
Cac8I GCNNGC 1 cut(s) 273
CfoI GCGC 1 cut(s) 299
Cfr13I GGNCC 1 cut(s) 152
CviAII CATG 1 cut(s) 90
CviJI RGCY 5 cut(s) 19, 154, 206, 257, 336
CviKI_1 RGCY 5 cut(s) 19, 154, 206, 257, 336
DdeI CTNAG 2 cut(s) 243, 253
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
DraI TTTAAA 1 cut(s) 169
DraIII CACNNNGTG 1 cut(s) 305
Eam1104I CTCTTC 1 cut(s) 214
EarI CTCTTC 1 cut(s) 214
EcoO109I RGGNCCY 1 cut(s) 152
EcoT22I ATGCAT 1 cut(s) 91
FaeI CATG 1 cut(s) 93
FaiI YATR 9 cut(s) 14, 24, 44, 87, 91, 109, 125, 139, 237
FatI CATG 1 cut(s) 89
Fnu4HI GCNGC 1 cut(s) 258
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 1 cut(s) 343
GlaI GCGC 1 cut(s) 298
GluI GCNGC 1 cut(s) 258
GsuI CTGGAG 1 cut(s) 303
HaeIII GGCC 1 cut(s) 154
HhaI GCGC 1 cut(s) 299
Hin1II CATG 1 cut(s) 93
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HincII GTYRAC 2 cut(s) 82, 181
HindII GTYRAC 2 cut(s) 82, 181
HinfI GANTC 1 cut(s) 308
HphI GGTGA 1 cut(s) 304
Hpy166II GTNNAC 2 cut(s) 82, 181
Hpy188I TCNGA 1 cut(s) 244
Hpy8I GTNNAC 2 cut(s) 82, 181
HpyAV CCTTC 3 cut(s) 143, 194, 280
HpyCH4V TGCA 2 cut(s) 89, 250
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 272
HpyF3I CTNAG 2 cut(s) 243, 253
Hsp92II CATG 1 cut(s) 93
HspAI GCGC 1 cut(s) 297
Kzo9I GATC 1 cut(s) 45
LmnI GCTCC 2 cut(s) 24, 203
LpnPI CCDG 4 cut(s) 171, 189, 285, 333
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 1 cut(s) 237
MaeI CTAG 1 cut(s) 343
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 3 cut(s) 50, 231, 303
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 3 cut(s) 165, 276, 283
Mph1103I ATGCAT 1 cut(s) 91
MseI TTAA 1 cut(s) 168
MspA1I CMGCKG 1 cut(s) 257
MwoI GCNNNNNNNGC 2 cut(s) 263, 272
NdeII GATC 1 cut(s) 45
NlaIII CATG 1 cut(s) 93
NlaIV GGNNCC 1 cut(s) 20
NsiI ATGCAT 1 cut(s) 91
PfeI GAWTC 1 cut(s) 308
PkrI GCNGC 1 cut(s) 259
PspN4I GGNNCC 1 cut(s) 20
PspPI GGNCC 1 cut(s) 152
PvuII CAGCTG 1 cut(s) 257
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 1 cut(s) 45
Sau96I GGNCC 1 cut(s) 152
SetI ASST 4 cut(s) 130, 208, 259, 294
SfaNI GCATC 1 cut(s) 237
SspMI CTAG 1 cut(s) 343
TfiI GAWTC 1 cut(s) 308
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TseI GCWGC 1 cut(s) 257
TspGWI ACGGA 1 cut(s) 293
XcmI CCANNNNNNNNNTGG 1 cut(s) 193
XspI CTAG 1 cut(s) 343
Zsp2I ATGCAT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.