Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004702

Physical Location & Seq

Genomic Coordinates Forward (+)

29489739 .. 29494446

Gene Structure 4708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G312400.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGAGGGCGGCGCAGGAAGAGGTTTGGAATGCCAGAAGACTATGGATGGGAAGGCGAGTAACGGGAATGGTTCAGAGAAGGCCATCCCTTCTTGTTGCTTGAAGGCTAGGGCTTCTGCCCCTGAGGCCGAGGCAAAATGTCATTCTACTGTTGTTTCTGGGTGGTTCTCAGAATCCCAGTCTCGCTCTGAGAAGGCTAGTAAGAAGGTTTATTTCAACAACCCAATGTGGCCTGGTAGGCAACTGGCATCTCATTCACTGAAAGTAGAGAAGATTCTGTACAAGGGAAAATCAGAGTTCCAAGAGATTTTGGTTTTTGAGTCCTCAACTTATGGAAAAGTGCTTGTTCTTGATGGCATTATCCAGCTGAGTGAGAAAGATGAATGTGCATACCAGGAGATGATAGCTCTTCTACCTCTTTGTTCAATTCCTTCCCCCAAGACAGTTCTGGTTGTTGGTGGTGGTGATGGTGGGGTTCTTAGGGAGGTTTCTCGCCATCCTTCTGTTGAGCATATTGACATATGTGAGATAGATAAGATGGTTGTAGATGTGTCTAAGAAGTTTTTCCCTCAGTTAGCTGTTGGATTTCAGGACCCACGTGTCCACCTTCATATTGGTGATGCTACTGAATTCCTGAGGCATGCGCCTAAAGGGAAGTATGATGCTGTAATTGTTGATTCATCAGACCCTGTAGGTCCTGCTCAAGAGCTTGTAGAGAAACCATTTTTTGAGACAATAGCTAGAGCATTAAGGCCTGGTGGTGTTCTCTGTAACATGGCGGAGAGTATGTGGCTCCATACGCATCTTATTCAAGATATGATCTCTGTTTGTCGTGAAACATTCAAGGGATCTGTCAATTATGCATGGGCGAGTGTTCCTACGTATCCAAGTGGTGTGATAGGCTTTCTGTTGTGCTCAACGGAGGGGCCTCCTGTTGATTTCAAAAATCCAGTCAATTCCATTGAGAAGTTAGAAGGAGCTCTCAAACATAAGAGAGAGCTTAGGTTCTATAACTCCGAGATGCACTCAGCTGCCTTTGCCTTGCCTCCTTTCTTGAGGAGGGAGGTGAGCGCTCTGTGCCATTCTTCAACCTCAACCTTGCCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko00330 ko00410 ko00480 ko01100 map00270 map00330 map00410 map00480 map01100

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

370

Amino Acids

40.47

Weight (kDa)

6.86

Isoelectric Point (pI)

51.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53120 AT5G53120 AT5G53120 AT5G53120 AT5G53120 AT5G53120 AT5G53120
fragaria_vesca	FvH4_7g31820 FvH4_7g31820
malus_domestica	MD01G1221000.v1.1 MD07G1291100.v1.1
prunus_persica	Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1
pyrus_communis	pycom01g23040 pycom07g26370
rosa_chinensis	RchiOBHm_Chr1g0381051
rosa_laevigata	RLG00000026249
rosa_multiflora	Rmu_sc0004494.1_g000004
rosa_roxburghii	Rroxscaffold_4G00278820
rosa_rugosa	Rorug01G0426900
rosa_samantha	Rh1CG420800
rosa_wichuraiana	Rw1G039270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	599
AciI	CCGC	2 cut(s)	9, 779
AclWI	GGATC	1 cut(s)	856
AcsI	RAATTY	1 cut(s)	629
AcvI	CACGTG	1 cut(s)	599
AfaI	GTAC	1 cut(s)	281
AfeI	AGCGCT	1 cut(s)	1072
AflIII	ACRYGT	1 cut(s)	598
AgsI	TTSAA	7 cut(s)	103, 217, 426, 812, 844, 943, 1089
AjnI	CCWGG	3 cut(s)	232, 393, 754
AluBI	AGCT	8 cut(s)	367, 407, 578, 709, 740, 980, 1000, 1031
AluI	AGCT	8 cut(s)	367, 407, 578, 709, 740, 980, 1000, 1031
Alw21I	GWGCWC	2 cut(s)	917, 982
Alw26I	GTCTC	2 cut(s)	186, 725
AlwI	GGATC	1 cut(s)	856
AlwNI	CAGNNNCTG	1 cut(s)	689
Aor51HI	AGCGCT	1 cut(s)	1072
AoxI	GGCC	5 cut(s)	81, 126, 230, 752, 926
ApeKI	GCWGC	1 cut(s)	1031
ApoI	RAATTY	1 cut(s)	629
ArsI	GACNNNNNNTTYG	2 cut(s)	936, 968
Asp700I	GAANNNNTTC	1 cut(s)	563
AspLEI	GCGC	3 cut(s)	14, 646, 1073
AspS9I	GGNCC	3 cut(s)	592, 695, 926
AsuHPI	GGTGA	3 cut(s)	476, 629, 1078
AvaII	GGWCC	2 cut(s)	592, 695
AxyI	CCTNAGG	2 cut(s)	123, 635
BanII	GRGCYC	1 cut(s)	982
BarI	GAAGNNNNNNTAC	2 cut(s)	263, 295
BbrPI	CACGTG	1 cut(s)	599
BbsI	GAAGAC	1 cut(s)	44
Bbv12I	GWGCWC	2 cut(s)	917, 982
BbvI	GCAGC	1 cut(s)	1018
BccI	CCATC	6 cut(s)	41, 92, 347, 461, 504, 532
BciT130I	CCWGG	3 cut(s)	234, 395, 756
BciVI	GTATCC	1 cut(s)	894
BcoDI	GTCTC	2 cut(s)	186, 725
BfaI	CTAG	3 cut(s)	108, 198, 741
BfmI	CTRYAG	1 cut(s)	690
BfoI	RGCGCY	1 cut(s)	1074
BfuI	GTATCC	1 cut(s)	894
BglI	GCCNNNNNGGC	2 cut(s)	125, 238
BisI	GCNGC	2 cut(s)	10, 1032
BlsI	GCNGC	2 cut(s)	11, 1033
Bme1390I	CCNGG	3 cut(s)	234, 395, 756
Bme18I	GGWCC	2 cut(s)	592, 695
BmgT120I	GGNCC	3 cut(s)	592, 695, 926
BmiI	GGNNCC	3 cut(s)	594, 794, 927
BmrFI	CCNGG	3 cut(s)	234, 395, 756
BmrI	ACTGGG	1 cut(s)	172
BmsI	GCATC	5 cut(s)	257, 610, 652, 811, 1011
BmuI	ACTGGG	1 cut(s)	172
BpiI	GAAGAC	1 cut(s)	44
BplI	GAGNNNNNCTC	2 cut(s)	1010, 1042
Bpu10I	CCTNAGC	1 cut(s)	1001
BpuEI	CTTGAG	2 cut(s)	687, 1075
BsaAI	YACGTR	2 cut(s)	599, 882
BsaJI	CCNNGG	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	773, 803
Bse1I	ACTGG	3 cut(s)	178, 249, 950
Bse21I	CCTNAGG	2 cut(s)	123, 635
BseBI	CCWGG	3 cut(s)	234, 395, 756
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	3 cut(s)	52, 84, 496
BseMII	CTCAG	7 cut(s)	114, 180, 183, 359, 584, 626, 1041
BseNI	ACTGG	3 cut(s)	178, 249, 950
BseRI	GAGGAG	1 cut(s)	1072
BseXI	GCAGC	1 cut(s)	1018
BshFI	GGCC	5 cut(s)	83, 128, 232, 754, 928
BsiHKAI	GWGCWC	2 cut(s)	917, 982
BsmAI	GTCTC	2 cut(s)	186, 725
BsmI	GAATGC	1 cut(s)	35
BsnI	GGCC	5 cut(s)	83, 128, 232, 754, 928
Bsp1286I	GDGCHC	2 cut(s)	917, 982
Bsp1407I	TGTACA	1 cut(s)	279
Bsp143I	GATC	2 cut(s)	819, 848
BspACI	CCGC	2 cut(s)	9, 779
BspANI	GGCC	5 cut(s)	83, 128, 232, 754, 928
BspCNI	CTCAG	7 cut(s)	115, 181, 182, 360, 583, 627, 1040
BspLI	GGNNCC	3 cut(s)	594, 794, 927
BspPI	GGATC	1 cut(s)	856
BspQI	GCTCTTC	1 cut(s)	414
BsrGI	TGTACA	1 cut(s)	279
BsrI	ACTGG	3 cut(s)	178, 249, 950
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	2 cut(s)	819, 848
Bst2UI	CCWGG	3 cut(s)	234, 395, 756
Bst4CI	ACNGT	2 cut(s)	151, 445
Bst6I	CTCTTC	2 cut(s)	13, 414
BstAUI	TGTACA	1 cut(s)	279
BstBAI	YACGTR	2 cut(s)	599, 882
BstC8I	GCNNGC	1 cut(s)	642
BstF5I	GGATG	3 cut(s)	52, 84, 496
BstH2I	RGCGCY	1 cut(s)	1074
BstHHI	GCGC	3 cut(s)	14, 646, 1073
BstKTI	GATC	2 cut(s)	822, 851
BstMAI	GTCTC	2 cut(s)	186, 725
BstMBI	GATC	2 cut(s)	819, 848
BstMWI	GCNNNNNNNGC	5 cut(s)	125, 238, 799, 1037, 1077
BstNI	CCWGG	3 cut(s)	234, 395, 756
BstNSI	RCATGY	1 cut(s)	644
BstSCI	CCNGG	3 cut(s)	232, 393, 754
BstSFI	CTRYAG	1 cut(s)	690
BstSNI	TACGTA	1 cut(s)	882
BstV1I	GCAGC	1 cut(s)	1018
BstV2I	GAAGAC	1 cut(s)	44
BstX2I	RGATCY	1 cut(s)	848
BstYI	RGATCY	1 cut(s)	848
Bsu36I	CCTNAGG	2 cut(s)	123, 635
BsuI	GTATCC	1 cut(s)	894
BsuRI	GGCC	5 cut(s)	83, 128, 232, 754, 928
BtsCI	GGATG	3 cut(s)	52, 84, 496
BtsIMutI	CAGTG	1 cut(s)	257
Cac8I	GCNNGC	1 cut(s)	642
CaiI	CAGNNNCTG	1 cut(s)	689
CfoI	GCGC	3 cut(s)	14, 646, 1073
Cfr13I	GGNCC	3 cut(s)	592, 695, 926
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	3 cut(s)	641, 775, 864
CviQI	GTAC	1 cut(s)	280
DpnI	GATC	2 cut(s)	821, 850
DpnII	GATC	2 cut(s)	819, 848
DrdI	GACNNNNNNGTC	1 cut(s)	599
DseDI	GACNNNNNNGTC	1 cut(s)	599
Eam1104I	CTCTTC	2 cut(s)	13, 414
EarI	CTCTTC	2 cut(s)	13, 414
EciI	GGCGGA	1 cut(s)	794
Ecl136II	GAGCTC	1 cut(s)	980
Eco105I	TACGTA	1 cut(s)	882
Eco147I	AGGCCT	1 cut(s)	754
Eco24I	GRGCYC	1 cut(s)	982
Eco47I	GGWCC	2 cut(s)	592, 695
Eco47III	AGCGCT	1 cut(s)	1072
Eco53kI	GAGCTC	1 cut(s)	980
Eco72I	CACGTG	1 cut(s)	599
Eco81I	CCTNAGG	2 cut(s)	123, 635
EcoICRI	GAGCTC	1 cut(s)	980
EcoO109I	RGGNCCY	3 cut(s)	592, 695, 926
EcoRI	GAATTC	1 cut(s)	629
EcoRII	CCWGG	3 cut(s)	232, 393, 754
EcoT22I	ATGCAT	1 cut(s)	865
EcoT38I	GRGCYC	1 cut(s)	982
FaeI	CATG	3 cut(s)	644, 778, 867
FatI	CATG	3 cut(s)	640, 774, 863
FauNDI	CATATG	1 cut(s)	521
Fnu4HI	GCNGC	2 cut(s)	10, 1032
FokI	GGATG	3 cut(s)	59, 71, 483
FriOI	GRGCYC	1 cut(s)	982
Fsp4HI	GCNGC	2 cut(s)	10, 1032
FspBI	CTAG	3 cut(s)	108, 198, 741
GlaI	GCGC	3 cut(s)	13, 645, 1072
GluI	GCNGC	2 cut(s)	10, 1032
HaeII	RGCGCY	1 cut(s)	1074
HaeIII	GGCC	5 cut(s)	83, 128, 232, 754, 928
HhaI	GCGC	3 cut(s)	14, 646, 1073
Hin1II	CATG	3 cut(s)	644, 778, 867
Hin6I	GCGC	3 cut(s)	12, 644, 1071
HinP1I	GCGC	3 cut(s)	12, 644, 1071
HinfI	GANTC	4 cut(s)	173, 274, 320, 677
HphI	GGTGA	3 cut(s)	476, 629, 1078
Hpy166II	GTNNAC	1 cut(s)	604
Hpy188I	TCNGA	6 cut(s)	76, 172, 190, 295, 685, 1018
Hpy188III	TCNNGA	7 cut(s)	350, 590, 634, 704, 812, 833, 1054
Hpy8I	GTNNAC	1 cut(s)	604
HpyCH4III	ACNGT	2 cut(s)	151, 445
HpyCH4IV	ACGT	2 cut(s)	598, 881
HpyCH4V	TGCA	3 cut(s)	389, 863, 1024
HpyF10VI	GCNNNNNNNGC	5 cut(s)	125, 238, 799, 1037, 1077
HpySE526I	ACGT	2 cut(s)	598, 881
Hsp92II	CATG	3 cut(s)	644, 778, 867
HspAI	GCGC	3 cut(s)	12, 644, 1071
Kzo9I	GATC	2 cut(s)	819, 848
LguI	GCTCTTC	1 cut(s)	414
LmnI	GCTCC	2 cut(s)	798, 977
Lsp1109I	GCAGC	1 cut(s)	1018
LweI	GCATC	5 cut(s)	257, 610, 652, 811, 1011
MaeI	CTAG	3 cut(s)	108, 198, 741
MaeII	ACGT	2 cut(s)	598, 881
MaeIII	GTNAC	2 cut(s)	59, 770
MalI	GATC	2 cut(s)	821, 850
MboI	GATC	2 cut(s)	819, 848
MboII	GAAGA	5 cut(s)	30, 49, 283, 401, 1077
MflI	RGATCY	1 cut(s)	848
MhlI	GDGCHC	2 cut(s)	917, 982
MluCI	AATT	5 cut(s)	426, 629, 669, 856, 955
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	1 cut(s)	562
Mph1103I	ATGCAT	1 cut(s)	865
MroXI	GAANNNNTTC	1 cut(s)	563
MseI	TTAA	1 cut(s)	749
MslI	CAYNNNNRTG	1 cut(s)	615
MspA1I	CMGCKG	2 cut(s)	367, 1031
MspR9I	CCNGG	3 cut(s)	234, 395, 756
Mva1269I	GAATGC	1 cut(s)	35
MvaI	CCWGG	3 cut(s)	234, 395, 756
MwoI	GCNNNNNNNGC	5 cut(s)	125, 238, 799, 1037, 1077
NdeI	CATATG	1 cut(s)	521
NdeII	GATC	2 cut(s)	819, 848
NlaIII	CATG	3 cut(s)	644, 778, 867
NlaIV	GGNNCC	3 cut(s)	594, 794, 927
NmeAIII	GCCGAG	1 cut(s)	154
NsiI	ATGCAT	1 cut(s)	865
NspI	RCATGY	1 cut(s)	644
PaeI	GCATGC	1 cut(s)	644
PceI	AGGCCT	1 cut(s)	754
PciSI	GCTCTTC	1 cut(s)	414
PctI	GAATGC	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	563
PfeI	GAWTC	3 cut(s)	173, 274, 677
PkrI	GCNGC	2 cut(s)	11, 1033
PleI	GAGTC	1 cut(s)	328
PmaCI	CACGTG	1 cut(s)	599
PmlI	CACGTG	1 cut(s)	599
PpsI	GAGTC	1 cut(s)	328
Ppu21I	YACGTR	2 cut(s)	599, 882
PpuMI	RGGWCCY	2 cut(s)	592, 695
Psp124BI	GAGCTC	1 cut(s)	982
Psp5II	RGGWCCY	2 cut(s)	592, 695
Psp6I	CCWGG	3 cut(s)	232, 393, 754
PspCI	CACGTG	1 cut(s)	599
PspGI	CCWGG	3 cut(s)	232, 393, 754
PspN4I	GGNNCC	3 cut(s)	594, 794, 927
PspPI	GGNCC	3 cut(s)	592, 695, 926
PspPPI	RGGWCCY	2 cut(s)	592, 695
PstNI	CAGNNNCTG	1 cut(s)	689
PsuI	RGATCY	1 cut(s)	848
PvuII	CAGCTG	2 cut(s)	367, 1031
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	615
SacI	GAGCTC	1 cut(s)	982
SapI	GCTCTTC	1 cut(s)	414
SaqAI	TTAA	1 cut(s)	749
SatI	GCNGC	2 cut(s)	10, 1032
Sau3AI	GATC	2 cut(s)	819, 848
Sau96I	GGNCC	3 cut(s)	592, 695, 926
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	3 cut(s)	234, 395, 756
SduI	GDGCHC	2 cut(s)	917, 982
SfaNI	GCATC	5 cut(s)	257, 610, 652, 811, 1011
SfcI	CTRYAG	1 cut(s)	690
SinI	GGWCC	2 cut(s)	592, 695
SmiMI	CAYNNNNRTG	1 cut(s)	615
SmlI	CTYRAG	2 cut(s)	702, 1054
SmoI	CTYRAG	2 cut(s)	702, 1054
SnaBI	TACGTA	1 cut(s)	882
SphI	GCATGC	1 cut(s)	644
Sse9I	AATT	5 cut(s)	426, 629, 669, 856, 955
SseBI	AGGCCT	1 cut(s)	754
SsiI	CCGC	2 cut(s)	9, 779
SspMI	CTAG	3 cut(s)	108, 198, 741
SstI	GAGCTC	1 cut(s)	982
StuI	AGGCCT	1 cut(s)	754
StyD4I	CCNGG	3 cut(s)	232, 393, 754
TaaI	ACNGT	2 cut(s)	151, 445
TaiI	ACGT	2 cut(s)	601, 884
TasI	AATT	5 cut(s)	426, 629, 669, 856, 955
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	1 cut(s)	12
TfiI	GAWTC	3 cut(s)	173, 274, 677
Tru1I	TTAA	1 cut(s)	749
Tru9I	TTAA	1 cut(s)	749
TscAI	CASTG	1 cut(s)	264
TseI	GCWGC	1 cut(s)	1031
TspDTI	ATGAA	3 cut(s)	396, 599, 669
TspGWI	ACGGA	1 cut(s)	935
TspRI	CASTG	1 cut(s)	264
VpaK11BI	GGWCC	2 cut(s)	592, 695
XapI	RAATTY	1 cut(s)	629
XceI	RCATGY	1 cut(s)	644
XcmI	CCANNNNNNNNNTGG	2 cut(s)	445, 611
XmnI	GAANNNNTTC	1 cut(s)	563
XspI	CTAG	3 cut(s)	108, 198, 741
Zsp2I	ATGCAT	1 cut(s)	865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.