Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004702

Physical Location & Seq

Genomic Coordinates Forward (+)

66839923 .. 66842808

Gene Structure 2886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G039270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGGGGAAGACGCAGGAAGAGGTTTGGAATGCCAGAAGACTATGGATGGGAAGGTGAGTAACAGAAACGGTTCAGAGAAGGCCATTCCTTCTTGTTGCTTGAAGGCTAGGGCTTCAGATCCTGAGGCCGATGCAATAAGCCATTCTACTGTTGTTTCTGGGTGGTTTTCAGAATCCCAGTCTCGCACAGATAAGGCTAGTAGAAAGACTTACTTCAACAACCCGATGTGGCCCGGTGAAGCTCACTCACTGAAAGTAGAAAACATTCTATTCAAGGATAAAATCAGATCTTCAACATATGGAAAAGTGCTTGTTCTTGATGGCATCATTCAGCTGAGTGAGAAGGACGAATGTGCATACCAGGAGATGATAACTCATCTACCTCTTTGTTCGATTCCCTCCCCAAAAAATGTTCTGGTTGTCGGTGGTGGTGATGGTGGAGTTCTTAGGGAGATATCACGCCATCCTTCTGTTGAGCATATTGATATATGTGAGATAGATAAGATGGTTATAGATGTGTCTAAGAAGTTTTTTCCAGAGTTAGCTGTTGGATTTGAGGACCCTCGTGTCCATCTGCATGTTGGTGATGCTACTGAATTCTTGAGGCATGCACCTGAAGGGAAGTATGATGCTATAATTGTTGATTCGTCAGATCCTGTAGGTCCTGCTCAAGAGCTTGTAGAGAAGCCATTTTTTGAGACAATCGCTAGAGCATTAAGGCCTGGCGGTGTTCTCTGTAACATGGCAGAGAGTATGTGGCTCCATACACATCTTATTGAAGATATGATCTCTGTTTGCCATCTAACATTCAAGGGGTCAGTCAACTATGCATGGGCGAGTGTTCCTACATATCCAAGTGGTGTTATAGGTTTTCTGCTATGCTCAACAGAAGGGCCTCCTGTTGATTTTAAAAATCCAGTCAACTCCATTGAGAAGTTGGAAGGAGCTGTCAAACACAGAAGAGAACTTCGGTTCTATAACTCTGAGATGCACTCAGCTGCCTTTGCCTTGCCTACTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko00330 ko00410 ko00480 ko01100 map00270 map00330 map00410 map00480 map01100

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

340

Amino Acids

37.49

Weight (kDa)

5.73

Isoelectric Point (pI)

49.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spermine_synt_N	PF17284	75 - 114	2e-07	Spermidine synthase tetramerisation domain
Spermine_synth	PF01564	117 - 305	8.6e-71	Spermine/spermidine synthase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53120 AT5G53120 AT5G53120 AT5G53120 AT5G53120 AT5G53120 AT5G53120
fragaria_vesca	FvH4_7g31820 FvH4_7g31820
malus_domestica	MD01G1221000.v1.1 MD07G1291100.v1.1
prunus_persica	Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1
pyrus_communis	pycom01g23040 pycom07g26370
rosa_chinensis	RchiOBHm_Chr1g0381051
rosa_laevigata	RLG00000026249
rosa_multiflora	Rmu_sc0004494.1_g000004
rosa_roxburghii	Rroxscaffold_4G00278820
rosa_rugosa	Rorug01G0426900
rosa_samantha	Rh1CG420800
rosa_wichuraiana	Rw1G039270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	566
AciI	CCGC	1 cut(s)	726
AclWI	GGATC	2 cut(s)	113, 647
AcsI	RAATTY	1 cut(s)	596
AcuI	CTGAAG	2 cut(s)	99, 636
AgsI	TTSAA	6 cut(s)	103, 217, 274, 294, 779, 811
AjnI	CCWGG	2 cut(s)	360, 721
AluBI	AGCT	6 cut(s)	242, 334, 545, 676, 947, 998
AluI	AGCT	6 cut(s)	242, 334, 545, 676, 947, 998
Alw26I	GTCTC	2 cut(s)	186, 692
AlwI	GGATC	2 cut(s)	113, 647
AlwNI	CAGNNNCTG	2 cut(s)	122, 656
AoxI	GGCC	5 cut(s)	81, 126, 230, 719, 893
ApeKI	GCWGC	1 cut(s)	998
ApoI	RAATTY	1 cut(s)	596
Asp700I	GAANNNNTTC	2 cut(s)	70, 264
AspS9I	GGNCC	4 cut(s)	231, 559, 662, 893
AsuC2I	CCSGG	1 cut(s)	234
AsuHPI	GGTGA	4 cut(s)	67, 248, 443, 596
AvaII	GGWCC	2 cut(s)	559, 662
AxyI	CCTNAGG	1 cut(s)	123
BauI	CACGAG	1 cut(s)	564
BbsI	GAAGAC	2 cut(s)	15, 44
BbvI	GCAGC	1 cut(s)	985
BccI	CCATC	7 cut(s)	41, 314, 428, 471, 499, 579, 807
BciT130I	CCWGG	2 cut(s)	362, 723
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	2 cut(s)	186, 692
BfaI	CTAG	3 cut(s)	108, 198, 708
BfmI	CTRYAG	1 cut(s)	657
BglII	AGATCT	1 cut(s)	287
BisI	GCNGC	1 cut(s)	999
BlsI	GCNGC	1 cut(s)	1000
Bme1390I	CCNGG	3 cut(s)	234, 362, 723
Bme18I	GGWCC	2 cut(s)	559, 662
BmgT120I	GGNCC	4 cut(s)	231, 559, 662, 893
BmiI	GGNNCC	2 cut(s)	561, 761
BmrFI	CCNGG	3 cut(s)	234, 362, 723
BmrI	ACTGGG	1 cut(s)	172
BmsI	GCATC	5 cut(s)	121, 333, 577, 619, 978
BmuI	ACTGGG	1 cut(s)	172
BpiI	GAAGAC	2 cut(s)	15, 44
BplI	GAGNNNNNCTC	2 cut(s)	977, 1009
BpuEI	CTTGAG	2 cut(s)	622, 654
BpuMI	CCSGG	1 cut(s)	234
Bse1I	ACTGG	2 cut(s)	178, 917
Bse21I	CCTNAGG	1 cut(s)	123
BseBI	CCWGG	2 cut(s)	362, 723
BseGI	GGATG	2 cut(s)	52, 463
BseMII	CTCAG	4 cut(s)	114, 326, 975, 1008
BseNI	ACTGG	2 cut(s)	178, 917
BseXI	GCAGC	1 cut(s)	985
BshFI	GGCC	5 cut(s)	83, 128, 232, 721, 895
BsiSI	CCGG	1 cut(s)	234
BsmAI	GTCTC	2 cut(s)	186, 692
BsmI	GAATGC	1 cut(s)	35
BsnI	GGCC	5 cut(s)	83, 128, 232, 721, 895
Bsp143I	GATC	4 cut(s)	118, 287, 652, 786
BspACI	CCGC	1 cut(s)	726
BspANI	GGCC	5 cut(s)	83, 128, 232, 721, 895
BspCNI	CTCAG	4 cut(s)	115, 327, 976, 1007
BspLI	GGNNCC	2 cut(s)	561, 761
BspPI	GGATC	2 cut(s)	113, 647
BsrI	ACTGG	2 cut(s)	178, 917
BssMI	GATC	4 cut(s)	118, 287, 652, 786
BssSI	CACGAG	1 cut(s)	564
Bst2BI	CACGAG	1 cut(s)	564
Bst2UI	CCWGG	2 cut(s)	362, 723
Bst4CI	ACNGT	2 cut(s)	71, 151
Bst6I	CTCTTC	2 cut(s)	13, 955
BstC8I	GCNNGC	1 cut(s)	609
BstDEI	CTNAG	6 cut(s)	123, 335, 446, 522, 984, 994
BstF5I	GGATG	2 cut(s)	52, 463
BstKTI	GATC	4 cut(s)	121, 290, 655, 789
BstMAI	GTCTC	2 cut(s)	186, 692
BstMBI	GATC	4 cut(s)	118, 287, 652, 786
BstMWI	GCNNNNNNNGC	1 cut(s)	1004
BstNI	CCWGG	2 cut(s)	362, 723
BstNSI	RCATGY	2 cut(s)	581, 611
BstSCI	CCNGG	3 cut(s)	232, 360, 721
BstSFI	CTRYAG	1 cut(s)	657
BstV1I	GCAGC	1 cut(s)	985
BstV2I	GAAGAC	2 cut(s)	15, 44
BstX2I	RGATCY	3 cut(s)	118, 287, 652
BstYI	RGATCY	3 cut(s)	118, 287, 652
Bsu36I	CCTNAGG	1 cut(s)	123
BsuRI	GGCC	5 cut(s)	83, 128, 232, 721, 895
BtsCI	GGATG	2 cut(s)	52, 463
BtsIMutI	CAGTG	1 cut(s)	248
Cac8I	GCNNGC	1 cut(s)	609
CaiI	CAGNNNCTG	2 cut(s)	122, 656
Cfr13I	GGNCC	4 cut(s)	231, 559, 662, 893
CseI	GACGC	1 cut(s)	20
CviAII	CATG	4 cut(s)	578, 608, 742, 831
DdeI	CTNAG	6 cut(s)	123, 335, 446, 522, 984, 994
DpnI	GATC	4 cut(s)	120, 289, 654, 788
DpnII	GATC	4 cut(s)	118, 287, 652, 786
DraI	TTTAAA	1 cut(s)	910
DrdI	GACNNNNNNGTC	1 cut(s)	566
DseDI	GACNNNNNNGTC	1 cut(s)	566
Eam1104I	CTCTTC	2 cut(s)	13, 955
EarI	CTCTTC	2 cut(s)	13, 955
Eco147I	AGGCCT	1 cut(s)	721
Eco32I	GATATC	1 cut(s)	456
Eco47I	GGWCC	2 cut(s)	559, 662
Eco57I	CTGAAG	2 cut(s)	99, 636
Eco81I	CCTNAGG	1 cut(s)	123
EcoO109I	RGGNCCY	3 cut(s)	559, 662, 893
EcoRI	GAATTC	1 cut(s)	596
EcoRII	CCWGG	2 cut(s)	360, 721
EcoRV	GATATC	1 cut(s)	456
EcoT22I	ATGCAT	1 cut(s)	832
FaeI	CATG	4 cut(s)	581, 611, 745, 834
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FatI	CATG	4 cut(s)	577, 607, 741, 830
FauNDI	CATATG	1 cut(s)	298
Fnu4HI	GCNGC	1 cut(s)	999
FokI	GGATG	2 cut(s)	59, 450
Fsp4HI	GCNGC	1 cut(s)	999
FspBI	CTAG	3 cut(s)	108, 198, 708
GluI	GCNGC	1 cut(s)	999
HaeIII	GGCC	5 cut(s)	83, 128, 232, 721, 895
HapII	CCGG	1 cut(s)	234
HgaI	GACGC	1 cut(s)	20
Hin1II	CATG	4 cut(s)	581, 611, 745, 834
HincII	GTYRAC	2 cut(s)	823, 922
HindII	GTYRAC	2 cut(s)	823, 922
HinfI	GANTC	3 cut(s)	173, 394, 644
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	4 cut(s)	67, 248, 443, 596
Hpy166II	GTNNAC	2 cut(s)	823, 922
Hpy188I	TCNGA	6 cut(s)	76, 118, 172, 287, 652, 985
Hpy188III	TCNNGA	5 cut(s)	122, 317, 536, 601, 671
Hpy8I	GTNNAC	2 cut(s)	823, 922
HpyAV	CCTTC	9 cut(s)	46, 73, 97, 99, 337, 477, 611, 884, 935
HpyCH4III	ACNGT	2 cut(s)	71, 151
HpyCH4V	TGCA	6 cut(s)	134, 356, 577, 611, 830, 991
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1004
HpyF3I	CTNAG	6 cut(s)	123, 335, 446, 522, 984, 994
Hsp92II	CATG	4 cut(s)	581, 611, 745, 834
Kzo9I	GATC	4 cut(s)	118, 287, 652, 786
LmnI	GCTCC	2 cut(s)	765, 944
Lsp1109I	GCAGC	1 cut(s)	985
LweI	GCATC	5 cut(s)	121, 333, 577, 619, 978
MaeI	CTAG	3 cut(s)	108, 198, 708
MaeIII	GTNAC	2 cut(s)	59, 737
MalI	GATC	4 cut(s)	120, 289, 654, 788
MboI	GATC	4 cut(s)	118, 287, 652, 786
MboII	GAAGA	6 cut(s)	20, 30, 49, 282, 791, 972
MflI	RGATCY	3 cut(s)	118, 287, 652
MluCI	AATT	2 cut(s)	596, 636
MmeI	TCCRAC	2 cut(s)	529, 918
MnlI	CCTC	8 cut(s)	14, 118, 393, 409, 550, 573, 597, 906
Mph1103I	ATGCAT	1 cut(s)	832
MroXI	GAANNNNTTC	2 cut(s)	70, 264
MseI	TTAA	2 cut(s)	716, 909
MslI	CAYNNNNRTG	2 cut(s)	576, 582
MspA1I	CMGCKG	2 cut(s)	334, 998
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	3 cut(s)	234, 362, 723
Mva1269I	GAATGC	1 cut(s)	35
MvaI	CCWGG	2 cut(s)	362, 723
MwoI	GCNNNNNNNGC	1 cut(s)	1004
NciI	CCSGG	1 cut(s)	234
NdeI	CATATG	1 cut(s)	298
NdeII	GATC	4 cut(s)	118, 287, 652, 786
NlaIII	CATG	4 cut(s)	581, 611, 745, 834
NlaIV	GGNNCC	2 cut(s)	561, 761
NsiI	ATGCAT	1 cut(s)	832
NspI	RCATGY	2 cut(s)	581, 611
PaeI	GCATGC	1 cut(s)	611
PceI	AGGCCT	1 cut(s)	721
PctI	GAATGC	1 cut(s)	35
PdmI	GAANNNNTTC	2 cut(s)	70, 264
PfeI	GAWTC	3 cut(s)	173, 394, 644
PkrI	GCNGC	1 cut(s)	1000
PpuMI	RGGWCCY	2 cut(s)	559, 662
Psp5II	RGGWCCY	2 cut(s)	559, 662
Psp6I	CCWGG	2 cut(s)	360, 721
PspGI	CCWGG	2 cut(s)	360, 721
PspN4I	GGNNCC	2 cut(s)	561, 761
PspPI	GGNCC	4 cut(s)	231, 559, 662, 893
PspPPI	RGGWCCY	2 cut(s)	559, 662
PstNI	CAGNNNCTG	2 cut(s)	122, 656
PsuI	RGATCY	3 cut(s)	118, 287, 652
PvuII	CAGCTG	2 cut(s)	334, 998
RseI	CAYNNNNRTG	2 cut(s)	576, 582
SaqAI	TTAA	2 cut(s)	716, 909
SatI	GCNGC	1 cut(s)	999
Sau3AI	GATC	4 cut(s)	118, 287, 652, 786
Sau96I	GGNCC	4 cut(s)	231, 559, 662, 893
ScrFI	CCNGG	3 cut(s)	234, 362, 723
SfaNI	GCATC	5 cut(s)	121, 333, 577, 619, 978
SfcI	CTRYAG	1 cut(s)	657
SinI	GGWCC	2 cut(s)	559, 662
SmiMI	CAYNNNNRTG	2 cut(s)	576, 582
SmlI	CTYRAG	2 cut(s)	601, 669
SmoI	CTYRAG	2 cut(s)	601, 669
SphI	GCATGC	1 cut(s)	611
Sse9I	AATT	2 cut(s)	596, 636
SseBI	AGGCCT	1 cut(s)	721
SsiI	CCGC	1 cut(s)	726
SspMI	CTAG	3 cut(s)	108, 198, 708
StuI	AGGCCT	1 cut(s)	721
StyD4I	CCNGG	3 cut(s)	232, 360, 721
TaaI	ACNGT	2 cut(s)	71, 151
TaqI	TCGA	1 cut(s)	392
TasI	AATT	2 cut(s)	596, 636
TfiI	GAWTC	3 cut(s)	173, 394, 644
Tru1I	TTAA	2 cut(s)	716, 909
Tru9I	TTAA	2 cut(s)	716, 909
TscAI	CASTG	1 cut(s)	255
TseI	GCWGC	1 cut(s)	998
TspRI	CASTG	1 cut(s)	255
VpaK11BI	GGWCC	2 cut(s)	559, 662
XapI	RAATTY	1 cut(s)	596
XceI	RCATGY	2 cut(s)	581, 611
XcmI	CCANNNNNNNNNTGG	2 cut(s)	578, 934
XmnI	GAANNNNTTC	2 cut(s)	70, 264
XspI	CTAG	3 cut(s)	108, 198, 708
Zsp2I	ATGCAT	1 cut(s)	832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.