Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004702

Physical Location & Seq

Genomic Coordinates Forward (+)

20477949 .. 20481313

Gene Structure 3365 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g23040.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGAGGACGTCGCAGGAAGAGGTTTGGAATGCCAGAAGACTATGGATGGGAAGGCGAGTAACGGGAATGGTTCGGAGAAGGCCATCCCTTCTTGTTGCGTGAAGGCTATGGCTTCTACCCCTGAGGCCGAGGCAAAATGTCATTCTACTGTTGTTTCTGGGTGGTTCTCAGAATCCCAGTCTCGCTCTGAGAAGGATTGTAAAAAGGTTTATTTCAACAACCCTATGTGGCCAGGTGAAGCTCATTCACTGAAAGTAGAAAATATTCTGTATAGGGGAAAATCAGAGTTCCAAGAGATTTTGGTGTTTGAGTCCTCAATATATGGGAAAGTGCTTGTTCTTGATGGCATTATCCAGCTGAGTGAGAAAGATGAATGTGCATACCAGGAGATGATAGCACATCTACCTCTTTGTTCAATTTCCTCCCCAAAGAGAGTTCTGGTTGTTGGTGGTGGTGATGGTGGGGTTCTTAGGGAGGTTTCTCGCCATCCTTCGGTTGAGCATATTGATATATGTGAGATAGATAAGATGGTTATAGATGTGTCCGAGAAGTTTTTCCCTCAGTTAGCCGTTGGATTTCAGGATCCTCGCGTCCACCTTCATGTTGCTGATGCTACTGAATTCTTAAGGCTTGCACCTGAAGGGAAGTATGATGCTGTAATTGTTGATTCGTCAGACCCTGTCGGTCCAGCCCAAGAGCTTGTAGAGAAGCCATTTTTTGAGACAATAGCTAGAGCATTAAGGCCTGGTGGTGTTCTCTGTAATATGACAGAGAGCATGTGGCTCCATACGCATCTTATTCAAGATATGATCTCTGTTTGCTGTCAAATATTCAAGGGGTCTGTCAATTATGCTTGGGCGAGTGTTCCTACGTATCCAAGTGGTGTGATAGGTTTTCTGTTGTGCTCAACAGCGGGGCCTCCCGTTGATTTCAAAAATCCCGTCAATTCTGTTGAGAAGTTGGAAGGAGCTCTCAAACATAAGAGAGAACTTAAGTTCTATAACTCCGAGATGCACTCAGCTGCCTTTGCGTTGCCTCCTTTCTTGAGGAGGGAGGTGAGTGCACTACGTGAATCTTCAACACCGGCAAGACAAATCGGCGAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko00330 ko00410 ko00480 ko01100 map00270 map00330 map00410 map00480 map01100

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

370

Amino Acids

40.61

Weight (kDa)

5.72

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53120 AT5G53120 AT5G53120 AT5G53120 AT5G53120 AT5G53120 AT5G53120
fragaria_vesca	FvH4_7g31820 FvH4_7g31820
malus_domestica	MD01G1221000.v1.1 MD07G1291100.v1.1
prunus_persica	Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1
pyrus_communis	pycom01g23040 pycom07g26370
rosa_chinensis	RchiOBHm_Chr1g0381051
rosa_laevigata	RLG00000026249
rosa_multiflora	Rmu_sc0004494.1_g000004
rosa_roxburghii	Rroxscaffold_4G00278820
rosa_rugosa	Rorug01G0426900
rosa_samantha	Rh1CG420800
rosa_wichuraiana	Rw1G039270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	12
AccII	CGCG	1 cut(s)	591
AciI	CCGC	1 cut(s)	914
AclWI	GGATC	2 cut(s)	578, 591
AcoI	YGGCCR	1 cut(s)	230
AcsI	RAATTY	1 cut(s)	620
AcuI	CTGAAG	1 cut(s)	660
AcyI	GRCGYC	1 cut(s)	9
AdeI	CACNNNGTG	1 cut(s)	1070
AfiI	CCNNNNNNNGG	1 cut(s)	493
AflII	CTTAAG	2 cut(s)	625, 992
AgsI	TTSAA	6 cut(s)	217, 417, 803, 835, 934, 1080
AjnI	CCWGG	3 cut(s)	232, 384, 745
AluBI	AGCT	6 cut(s)	242, 358, 700, 731, 971, 1022
AluI	AGCT	6 cut(s)	242, 358, 700, 731, 971, 1022
Alw21I	GWGCWC	3 cut(s)	908, 973, 1066
Alw26I	GTCTC	2 cut(s)	186, 716
Alw44I	GTGCAC	1 cut(s)	1062
AlwI	GGATC	2 cut(s)	578, 591
AlwNI	CAGNNNCTG	1 cut(s)	680
AoxI	GGCC	5 cut(s)	81, 126, 230, 743, 917
ApaLI	GTGCAC	1 cut(s)	1062
ApeKI	GCWGC	1 cut(s)	1022
ApoI	RAATTY	1 cut(s)	620
ArsI	GACNNNNNNTTYG	2 cut(s)	927, 959
Asp700I	GAANNNNTTC	2 cut(s)	264, 554
AspS9I	GGNCC	2 cut(s)	686, 917
AsuHPI	GGTGA	3 cut(s)	248, 467, 1069
AvaII	GGWCC	1 cut(s)	686
AxyI	CCTNAGG	1 cut(s)	123
BaeGI	GKGCMC	1 cut(s)	1066
BalI	TGGCCA	1 cut(s)	232
BamHI	GGATCC	1 cut(s)	583
BanII	GRGCYC	1 cut(s)	973
BbsI	GAAGAC	1 cut(s)	44
Bbv12I	GWGCWC	3 cut(s)	908, 973, 1066
BbvI	GCAGC	1 cut(s)	1009
BccI	CCATC	6 cut(s)	41, 92, 338, 452, 495, 523
BceAI	ACGGC	1 cut(s)	554
BciT130I	CCWGG	3 cut(s)	234, 386, 747
BciVI	GTATCC	1 cut(s)	885
BcoDI	GTCTC	2 cut(s)	186, 716
BfaI	CTAG	1 cut(s)	732
BfrI	CTTAAG	2 cut(s)	625, 992
BfuI	GTATCC	1 cut(s)	885
BisI	GCNGC	1 cut(s)	1023
BlsI	GCNGC	1 cut(s)	1024
Bme1390I	CCNGG	3 cut(s)	234, 386, 747
Bme18I	GGWCC	1 cut(s)	686
BmgT120I	GGNCC	2 cut(s)	686, 917
BmiI	GGNNCC	3 cut(s)	585, 785, 918
BmrFI	CCNGG	3 cut(s)	234, 386, 747
BmrI	ACTGGG	1 cut(s)	172
BmsI	GCATC	4 cut(s)	601, 643, 802, 1002
BmuI	ACTGGG	1 cut(s)	172
BpiI	GAAGAC	1 cut(s)	44
BplI	GAGNNNNNCTC	2 cut(s)	1001, 1033
BpuEI	CTTGAG	1 cut(s)	1066
BsaAI	YACGTR	2 cut(s)	873, 1070
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	1 cut(s)	493
Bse118I	RCCGGY	1 cut(s)	1084
Bse1I	ACTGG	1 cut(s)	178
Bse21I	CCTNAGG	1 cut(s)	123
BseBI	CCWGG	3 cut(s)	234, 386, 747
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	3 cut(s)	52, 84, 487
BseLI	CCNNNNNNNGG	1 cut(s)	493
BseMII	CTCAG	6 cut(s)	114, 180, 183, 350, 575, 1032
BseNI	ACTGG	1 cut(s)	178
BseRI	GAGGAG	1 cut(s)	1063
BseSI	GKGCMC	1 cut(s)	1066
BseXI	GCAGC	1 cut(s)	1009
Bsh1236I	CGCG	1 cut(s)	591
BshFI	GGCC	5 cut(s)	83, 128, 232, 745, 919
BsiHKAI	GWGCWC	3 cut(s)	908, 973, 1066
BsiSI	CCGG	1 cut(s)	1085
BslI	CCNNNNNNNGG	1 cut(s)	493
BsmAI	GTCTC	2 cut(s)	186, 716
BsmI	GAATGC	1 cut(s)	35
BsnI	GGCC	5 cut(s)	83, 128, 232, 745, 919
Bsp1286I	GDGCHC	3 cut(s)	908, 973, 1066
Bsp143I	GATC	2 cut(s)	583, 810
BspACI	CCGC	1 cut(s)	914
BspANI	GGCC	5 cut(s)	83, 128, 232, 745, 919
BspCNI	CTCAG	6 cut(s)	115, 181, 182, 351, 574, 1031
BspFNI	CGCG	1 cut(s)	591
BspLI	GGNNCC	3 cut(s)	585, 785, 918
BspPI	GGATC	2 cut(s)	578, 591
BspTI	CTTAAG	2 cut(s)	625, 992
BsrFI	RCCGGY	1 cut(s)	1084
BsrI	ACTGG	1 cut(s)	178
BssAI	RCCGGY	1 cut(s)	1084
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	2 cut(s)	583, 810
BssNI	GRCGYC	1 cut(s)	9
Bst2UI	CCWGG	3 cut(s)	234, 386, 747
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	1 cut(s)	13
BstACI	GRCGYC	1 cut(s)	9
BstAFI	CTTAAG	2 cut(s)	625, 992
BstBAI	YACGTR	2 cut(s)	873, 1070
BstC8I	GCNNGC	1 cut(s)	633
BstDEI	CTNAG	7 cut(s)	123, 169, 189, 359, 470, 561, 1018
BstF5I	GGATG	3 cut(s)	52, 84, 487
BstFNI	CGCG	1 cut(s)	591
BstKTI	GATC	2 cut(s)	586, 813
BstMAI	GTCTC	2 cut(s)	186, 716
BstMBI	GATC	2 cut(s)	583, 810
BstMWI	GCNNNNNNNGC	2 cut(s)	790, 1028
BstNI	CCWGG	3 cut(s)	234, 386, 747
BstNSI	RCATGY	1 cut(s)	781
BstSCI	CCNGG	3 cut(s)	232, 384, 745
BstSLI	GKGCMC	1 cut(s)	1066
BstSNI	TACGTA	1 cut(s)	873
BstUI	CGCG	1 cut(s)	591
BstV1I	GCAGC	1 cut(s)	1009
BstV2I	GAAGAC	1 cut(s)	44
BstX2I	RGATCY	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	583
Bsu36I	CCTNAGG	1 cut(s)	123
BsuI	GTATCC	1 cut(s)	885
BsuRI	GGCC	5 cut(s)	83, 128, 232, 745, 919
BtsCI	GGATG	3 cut(s)	52, 84, 487
BtsIMutI	CAGTG	1 cut(s)	248
Cac8I	GCNNGC	1 cut(s)	633
CaiI	CAGNNNCTG	1 cut(s)	680
Cfr10I	RCCGGY	1 cut(s)	1084
Cfr13I	GGNCC	2 cut(s)	686, 917
CseI	GACGC	1 cut(s)	580
CviAII	CATG	2 cut(s)	602, 778
DdeI	CTNAG	7 cut(s)	123, 169, 189, 359, 470, 561, 1018
DpnI	GATC	2 cut(s)	585, 812
DpnII	GATC	2 cut(s)	583, 810
DraIII	CACNNNGTG	1 cut(s)	1070
EaeI	YGGCCR	1 cut(s)	230
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
Ecl136II	GAGCTC	1 cut(s)	971
Eco105I	TACGTA	1 cut(s)	873
Eco147I	AGGCCT	1 cut(s)	745
Eco24I	GRGCYC	1 cut(s)	973
Eco47I	GGWCC	1 cut(s)	686
Eco53kI	GAGCTC	1 cut(s)	971
Eco57I	CTGAAG	1 cut(s)	660
Eco81I	CCTNAGG	1 cut(s)	123
EcoICRI	GAGCTC	1 cut(s)	971
EcoO109I	RGGNCCY	1 cut(s)	917
EcoRI	GAATTC	1 cut(s)	620
EcoRII	CCWGG	3 cut(s)	232, 384, 745
EcoT38I	GRGCYC	1 cut(s)	973
FaeI	CATG	2 cut(s)	605, 781
FatI	CATG	2 cut(s)	601, 777
FauI	CCCGC	1 cut(s)	907
Fnu4HI	GCNGC	1 cut(s)	1023
FokI	GGATG	3 cut(s)	59, 71, 474
FriOI	GRGCYC	1 cut(s)	973
Fsp4HI	GCNGC	1 cut(s)	1023
FspBI	CTAG	1 cut(s)	732
GluI	GCNGC	1 cut(s)	1023
HaeIII	GGCC	5 cut(s)	83, 128, 232, 745, 919
HapII	CCGG	1 cut(s)	1085
HgaI	GACGC	1 cut(s)	580
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	2 cut(s)	605, 781
HinfI	GANTC	4 cut(s)	173, 311, 668, 1073
HpaII	CCGG	1 cut(s)	1085
HphI	GGTGA	3 cut(s)	248, 467, 1069
Hpy166II	GTNNAC	2 cut(s)	595, 1064
Hpy188I	TCNGA	7 cut(s)	76, 172, 190, 286, 547, 676, 1009
Hpy188III	TCNNGA	4 cut(s)	341, 581, 803, 1045
Hpy8I	GTNNAC	2 cut(s)	595, 1064
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	9 cut(s)	46, 73, 97, 99, 187, 501, 608, 635, 959
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	3 cut(s)	9, 872, 1069
HpyCH4V	TGCA	4 cut(s)	380, 635, 1015, 1064
HpyF10VI	GCNNNNNNNGC	2 cut(s)	790, 1028
HpyF3I	CTNAG	7 cut(s)	123, 169, 189, 359, 470, 561, 1018
HpySE526I	ACGT	3 cut(s)	9, 872, 1069
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	2 cut(s)	605, 781
Kzo9I	GATC	2 cut(s)	583, 810
LmnI	GCTCC	2 cut(s)	789, 968
Lsp1109I	GCAGC	1 cut(s)	1009
LweI	GCATC	4 cut(s)	601, 643, 802, 1002
MaeI	CTAG	1 cut(s)	732
MaeII	ACGT	3 cut(s)	9, 872, 1069
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	2 cut(s)	585, 812
MboI	GATC	2 cut(s)	583, 810
MboII	GAAGA	3 cut(s)	30, 49, 1068
MflI	RGATCY	1 cut(s)	583
MhlI	GDGCHC	3 cut(s)	908, 973, 1066
MlsI	TGGCCA	1 cut(s)	232
MluCI	AATT	5 cut(s)	417, 620, 660, 847, 946
MluNI	TGGCCA	1 cut(s)	232
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	2 cut(s)	553, 942
Mox20I	TGGCCA	1 cut(s)	232
MroXI	GAANNNNTTC	2 cut(s)	264, 554
MscI	TGGCCA	1 cut(s)	232
MseI	TTAA	3 cut(s)	626, 740, 993
MslI	CAYNNNNRTG	1 cut(s)	600
Msp20I	TGGCCA	1 cut(s)	232
MspA1I	CMGCKG	3 cut(s)	358, 914, 1022
MspCI	CTTAAG	2 cut(s)	625, 992
MspI	CCGG	1 cut(s)	1085
MspR9I	CCNGG	3 cut(s)	234, 386, 747
Mva1269I	GAATGC	1 cut(s)	35
MvaI	CCWGG	3 cut(s)	234, 386, 747
MvnI	CGCG	1 cut(s)	591
MwoI	GCNNNNNNNGC	2 cut(s)	790, 1028
NdeII	GATC	2 cut(s)	583, 810
NlaIII	CATG	2 cut(s)	605, 781
NlaIV	GGNNCC	3 cut(s)	585, 785, 918
NmeAIII	GCCGAG	1 cut(s)	154
NspI	RCATGY	1 cut(s)	781
PceI	AGGCCT	1 cut(s)	745
PctI	GAATGC	1 cut(s)	35
PdmI	GAANNNNTTC	2 cut(s)	264, 554
PfeI	GAWTC	3 cut(s)	173, 668, 1073
PflFI	GACNNNGTC	1 cut(s)	680
PkrI	GCNGC	1 cut(s)	1024
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
Ppu21I	YACGTR	2 cut(s)	873, 1070
Psp124BI	GAGCTC	1 cut(s)	973
Psp6I	CCWGG	3 cut(s)	232, 384, 745
PspGI	CCWGG	3 cut(s)	232, 384, 745
PspN4I	GGNNCC	3 cut(s)	585, 785, 918
PspPI	GGNCC	2 cut(s)	686, 917
PstNI	CAGNNNCTG	1 cut(s)	680
PsuI	RGATCY	1 cut(s)	583
PsyI	GACNNNGTC	1 cut(s)	680
PvuII	CAGCTG	2 cut(s)	358, 1022
RseI	CAYNNNNRTG	1 cut(s)	600
SacI	GAGCTC	1 cut(s)	973
SaqAI	TTAA	3 cut(s)	626, 740, 993
SatI	GCNGC	1 cut(s)	1023
Sau3AI	GATC	2 cut(s)	583, 810
Sau96I	GGNCC	2 cut(s)	686, 917
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	3 cut(s)	234, 386, 747
SduI	GDGCHC	3 cut(s)	908, 973, 1066
SfaNI	GCATC	4 cut(s)	601, 643, 802, 1002
SinI	GGWCC	1 cut(s)	686
SmiMI	CAYNNNNRTG	1 cut(s)	600
SmlI	CTYRAG	3 cut(s)	625, 992, 1045
SmoI	CTYRAG	3 cut(s)	625, 992, 1045
SnaBI	TACGTA	1 cut(s)	873
Sse9I	AATT	5 cut(s)	417, 620, 660, 847, 946
SseBI	AGGCCT	1 cut(s)	745
SsiI	CCGC	1 cut(s)	914
SspI	AATATT	2 cut(s)	265, 831
SspMI	CTAG	1 cut(s)	732
SstI	GAGCTC	1 cut(s)	973
StuI	AGGCCT	1 cut(s)	745
StyD4I	CCNGG	3 cut(s)	232, 384, 745
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	3 cut(s)	12, 875, 1072
TaqII	GACCGA	1 cut(s)	674
TasI	AATT	5 cut(s)	417, 620, 660, 847, 946
TfiI	GAWTC	3 cut(s)	173, 668, 1073
Tru1I	TTAA	3 cut(s)	626, 740, 993
Tru9I	TTAA	3 cut(s)	626, 740, 993
TscAI	CASTG	1 cut(s)	255
TseI	GCWGC	1 cut(s)	1022
TspDTI	ATGAA	2 cut(s)	387, 590
TspRI	CASTG	1 cut(s)	255
Tth111I	GACNNNGTC	1 cut(s)	680
Vha464I	CTTAAG	2 cut(s)	625, 992
VneI	GTGCAC	1 cut(s)	1062
VpaK11BI	GGWCC	1 cut(s)	686
XapI	RAATTY	1 cut(s)	620
XceI	RCATGY	1 cut(s)	781
XmnI	GAANNNNTTC	2 cut(s)	264, 554
XspI	CTAG	1 cut(s)	732
ZraI	GACGTC	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.