Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004702

Physical Location & Seq

Genomic Coordinates Forward (+)

68032152 .. 68037260

Gene Structure 5109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG420800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGGGGAAGACGCAGGAAGAGGTTTGGAATGCCAGAAGACTATGGATGGGAAGGTGAGTAACAGAAACCTTTCAGAGAAGGCCATTCCTTCTTGTTGCTTGAAGGCTAGGGCTTCAGATCCTGAGGCCGATGCAATAAGCCATTCTACTGTTGTTTCTGGGTGGTTTTCAGAATCCCAGTCTCGCACAGATAAGGCTAGTAGAAAGACTTACTTCAACAACCCGATGTGGCCTGGTGAAGCTCACTCACTGAAAGTAGAAAACATTCTATTCAAGGATAAATCAGAGTTCCAAGAGGTTTTGGTTTTTGAGTCTTCAACATATGGAAAAGTGCTTGTTCTTGATGGCATCATTCAGCTGAGTGAGAAGGACGAATGTGCATACCAGGAGATGATAACTCATCTACCTCTTTGTTCGATTCCCTCCCCAAAAAATGTTCTGGTTGTCGGTGGTGGTGATGGCGGAGTTCTTAGGGAGATATCGCGCCATCCTTCTGTTGAGCATATTGATATATGTGAGATAGATAAGATGGTTATAGATGTGTCTAAGAAGTTTTTTCCAGAGTTAGCTGTTGGATTTGAGGACCCTCGTGTCCATCTGCATGTTGGTGATGCTACTGAATTCTTGAGGCATGCACCTGAAGGGAAGTATGATGCTATAATTGTTGATTCATCAGATCCTGTAGGTCCTGCTCAAGAGCTTGTAGAGAAGCCATTTTTTGAGACAATCGCTAGAGCATTAAGGCCTGGCGGTGTTCTCTGTAACATGGCAGAGAGTATGTGGCTCCATACACATCTTATTGAAGATATGATCTCTGTTTGCCATCTAACATTCAAGGGGTCAGTCAACTATGCATGGGCGAGTGTTCCTACATATCCAAGTGGTGTTATAGGTTTTCTGCTATGCTCAACAGAAGGGCCTCCTGTTGATTTTAAAAATCCAGTCAACTCCATTGAGAAGTTGGAAGGAGCTGTCAAACACAGAAGAGAACTTCGGTTCTATAACTCTGAGATGCACTCAGCTGCCTTTGCCCTGCCTGCTTTTTTGAGGAAGGAGGTGAGCGCACTCCGTGATTCTTCAACTCCAGCAAGACAAAGCGGCTTGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko00330 ko00410 ko00480 ko01100 map00270 map00330 map00410 map00480 map01100

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

369

Amino Acids

40.7

Weight (kDa)

5.58

Isoelectric Point (pI)

52.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spermine_synt_N	PF17284	74 - 122	7.2e-19	Spermidine synthase tetramerisation domain
Spermine_synth	PF01564	125 - 313	1.1e-70	Spermine/spermidine synthase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53120 AT5G53120 AT5G53120 AT5G53120 AT5G53120 AT5G53120 AT5G53120
fragaria_vesca	FvH4_7g31820 FvH4_7g31820
malus_domestica	MD01G1221000.v1.1 MD07G1291100.v1.1
prunus_persica	Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1 Prupe.2G312400_v2.0.a1
pyrus_communis	pycom01g23040 pycom07g26370
rosa_chinensis	RchiOBHm_Chr1g0381051
rosa_laevigata	RLG00000026249
rosa_multiflora	Rmu_sc0004494.1_g000004
rosa_roxburghii	Rroxscaffold_4G00278820
rosa_rugosa	Rorug01G0426900
rosa_samantha	Rh1CG420800
rosa_wichuraiana	Rw1G039270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	590
AccII	CGCG	1 cut(s)	484
AciI	CCGC	3 cut(s)	462, 750, 1098
AclWI	GGATC	2 cut(s)	113, 671
AcsI	RAATTY	1 cut(s)	620
AcuI	CTGAAG	2 cut(s)	99, 660
AdeI	CACNNNGTG	1 cut(s)	1070
AgsI	TTSAA	7 cut(s)	103, 217, 274, 318, 803, 835, 1080
AjnI	CCWGG	3 cut(s)	232, 384, 745
AluBI	AGCT	6 cut(s)	242, 358, 569, 700, 971, 1022
AluI	AGCT	6 cut(s)	242, 358, 569, 700, 971, 1022
Alw26I	GTCTC	2 cut(s)	186, 716
AlwI	GGATC	2 cut(s)	113, 671
AlwNI	CAGNNNCTG	2 cut(s)	122, 680
AoxI	GGCC	5 cut(s)	81, 126, 230, 743, 917
ApeKI	GCWGC	1 cut(s)	1022
ApoI	RAATTY	1 cut(s)	620
Asp700I	GAANNNNTTC	2 cut(s)	70, 264
AspLEI	GCGC	2 cut(s)	486, 1064
AspS9I	GGNCC	3 cut(s)	583, 686, 917
AsuHPI	GGTGA	5 cut(s)	67, 248, 467, 620, 1069
AvaII	GGWCC	2 cut(s)	583, 686
AxyI	CCTNAGG	1 cut(s)	123
BauI	CACGAG	1 cut(s)	588
BbsI	GAAGAC	3 cut(s)	15, 44, 306
BbvI	GCAGC	1 cut(s)	1009
BccI	CCATC	7 cut(s)	41, 338, 452, 495, 523, 603, 831
BciT130I	CCWGG	3 cut(s)	234, 386, 747
BcoDI	GTCTC	2 cut(s)	186, 716
BfaI	CTAG	4 cut(s)	108, 198, 732, 1108
BfmI	CTRYAG	1 cut(s)	681
BisI	GCNGC	2 cut(s)	1023, 1099
BlsI	GCNGC	2 cut(s)	1024, 1100
Bme1390I	CCNGG	3 cut(s)	234, 386, 747
Bme18I	GGWCC	2 cut(s)	583, 686
BmgT120I	GGNCC	3 cut(s)	583, 686, 917
BmiI	GGNNCC	2 cut(s)	585, 785
BmrFI	CCNGG	3 cut(s)	234, 386, 747
BmrI	ACTGGG	1 cut(s)	172
BmsI	GCATC	5 cut(s)	121, 357, 601, 643, 1002
BmuI	ACTGGG	1 cut(s)	172
BpiI	GAAGAC	3 cut(s)	15, 44, 306
BplI	GAGNNNNNCTC	2 cut(s)	1001, 1033
BpmI	CTGGAG	1 cut(s)	1068
BpuEI	CTTGAG	2 cut(s)	646, 678
Bse1I	ACTGG	2 cut(s)	178, 941
Bse21I	CCTNAGG	1 cut(s)	123
BseBI	CCWGG	3 cut(s)	234, 386, 747
BseGI	GGATG	2 cut(s)	52, 487
BseMII	CTCAG	4 cut(s)	114, 350, 999, 1032
BseNI	ACTGG	2 cut(s)	178, 941
BseXI	GCAGC	1 cut(s)	1009
Bsh1236I	CGCG	1 cut(s)	484
BshFI	GGCC	5 cut(s)	83, 128, 232, 745, 919
BsmAI	GTCTC	2 cut(s)	186, 716
BsmI	GAATGC	1 cut(s)	35
BsnI	GGCC	5 cut(s)	83, 128, 232, 745, 919
Bsp143I	GATC	3 cut(s)	118, 676, 810
BspACI	CCGC	3 cut(s)	462, 750, 1098
BspANI	GGCC	5 cut(s)	83, 128, 232, 745, 919
BspCNI	CTCAG	4 cut(s)	115, 351, 1000, 1031
BspFNI	CGCG	1 cut(s)	484
BspLI	GGNNCC	2 cut(s)	585, 785
BspPI	GGATC	2 cut(s)	113, 671
BsrI	ACTGG	2 cut(s)	178, 941
BssMI	GATC	3 cut(s)	118, 676, 810
BssSI	CACGAG	1 cut(s)	588
Bst2BI	CACGAG	1 cut(s)	588
Bst2UI	CCWGG	3 cut(s)	234, 386, 747
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	2 cut(s)	13, 979
BstC8I	GCNNGC	2 cut(s)	633, 1038
BstDEI	CTNAG	6 cut(s)	123, 359, 470, 546, 1008, 1018
BstF5I	GGATG	2 cut(s)	52, 487
BstFNI	CGCG	1 cut(s)	484
BstHHI	GCGC	2 cut(s)	486, 1064
BstKTI	GATC	3 cut(s)	121, 679, 813
BstMAI	GTCTC	2 cut(s)	186, 716
BstMBI	GATC	3 cut(s)	118, 676, 810
BstMWI	GCNNNNNNNGC	2 cut(s)	1028, 1037
BstNI	CCWGG	3 cut(s)	234, 386, 747
BstNSI	RCATGY	2 cut(s)	605, 635
BstSCI	CCNGG	3 cut(s)	232, 384, 745
BstSFI	CTRYAG	1 cut(s)	681
BstUI	CGCG	1 cut(s)	484
BstV1I	GCAGC	1 cut(s)	1009
BstV2I	GAAGAC	3 cut(s)	15, 44, 306
BstX2I	RGATCY	2 cut(s)	118, 676
BstYI	RGATCY	2 cut(s)	118, 676
Bsu36I	CCTNAGG	1 cut(s)	123
BsuRI	GGCC	5 cut(s)	83, 128, 232, 745, 919
BtsCI	GGATG	2 cut(s)	52, 487
BtsIMutI	CAGTG	1 cut(s)	248
Cac8I	GCNNGC	2 cut(s)	633, 1038
CaiI	CAGNNNCTG	2 cut(s)	122, 680
CfoI	GCGC	2 cut(s)	486, 1064
Cfr13I	GGNCC	3 cut(s)	583, 686, 917
CseI	GACGC	1 cut(s)	20
CviAII	CATG	4 cut(s)	602, 632, 766, 855
DdeI	CTNAG	6 cut(s)	123, 359, 470, 546, 1008, 1018
DpnI	GATC	3 cut(s)	120, 678, 812
DpnII	GATC	3 cut(s)	118, 676, 810
DraI	TTTAAA	1 cut(s)	934
DraIII	CACNNNGTG	1 cut(s)	1070
DrdI	GACNNNNNNGTC	1 cut(s)	590
DseDI	GACNNNNNNGTC	1 cut(s)	590
Eam1104I	CTCTTC	2 cut(s)	13, 979
EarI	CTCTTC	2 cut(s)	13, 979
EciI	GGCGGA	1 cut(s)	477
Eco147I	AGGCCT	1 cut(s)	745
Eco32I	GATATC	1 cut(s)	480
Eco47I	GGWCC	2 cut(s)	583, 686
Eco57I	CTGAAG	2 cut(s)	99, 660
Eco81I	CCTNAGG	1 cut(s)	123
EcoO109I	RGGNCCY	3 cut(s)	583, 686, 917
EcoRI	GAATTC	1 cut(s)	620
EcoRII	CCWGG	3 cut(s)	232, 384, 745
EcoRV	GATATC	1 cut(s)	480
EcoT22I	ATGCAT	1 cut(s)	856
FaeI	CATG	4 cut(s)	605, 635, 769, 858
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FatI	CATG	4 cut(s)	601, 631, 765, 854
FauNDI	CATATG	1 cut(s)	322
Fnu4HI	GCNGC	2 cut(s)	1023, 1099
FokI	GGATG	2 cut(s)	59, 474
Fsp4HI	GCNGC	2 cut(s)	1023, 1099
FspBI	CTAG	4 cut(s)	108, 198, 732, 1108
GlaI	GCGC	2 cut(s)	485, 1063
GluI	GCNGC	2 cut(s)	1023, 1099
GsuI	CTGGAG	1 cut(s)	1068
HaeIII	GGCC	5 cut(s)	83, 128, 232, 745, 919
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	2 cut(s)	486, 1064
Hin1II	CATG	4 cut(s)	605, 635, 769, 858
Hin6I	GCGC	2 cut(s)	484, 1062
HinP1I	GCGC	2 cut(s)	484, 1062
HincII	GTYRAC	2 cut(s)	847, 946
HindII	GTYRAC	2 cut(s)	847, 946
HinfI	GANTC	5 cut(s)	173, 311, 418, 668, 1073
HphI	GGTGA	5 cut(s)	67, 248, 467, 620, 1069
Hpy166II	GTNNAC	2 cut(s)	847, 946
Hpy188I	TCNGA	6 cut(s)	76, 118, 172, 286, 676, 1009
Hpy188III	TCNNGA	5 cut(s)	122, 341, 560, 625, 695
Hpy8I	GTNNAC	2 cut(s)	847, 946
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4V	TGCA	6 cut(s)	134, 380, 601, 635, 854, 1015
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1028, 1037
HpyF3I	CTNAG	6 cut(s)	123, 359, 470, 546, 1008, 1018
Hsp92II	CATG	4 cut(s)	605, 635, 769, 858
HspAI	GCGC	2 cut(s)	484, 1062
Kzo9I	GATC	3 cut(s)	118, 676, 810
LmnI	GCTCC	2 cut(s)	789, 968
Lsp1109I	GCAGC	1 cut(s)	1009
LweI	GCATC	5 cut(s)	121, 357, 601, 643, 1002
MaeI	CTAG	4 cut(s)	108, 198, 732, 1108
MaeIII	GTNAC	2 cut(s)	59, 761
MalI	GATC	3 cut(s)	120, 678, 812
MboI	GATC	3 cut(s)	118, 676, 810
MboII	GAAGA	7 cut(s)	20, 30, 49, 306, 815, 996, 1068
MflI	RGATCY	2 cut(s)	118, 676
MluCI	AATT	2 cut(s)	620, 660
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	2 cut(s)	553, 942
Mph1103I	ATGCAT	1 cut(s)	856
MroXI	GAANNNNTTC	2 cut(s)	70, 264
MseI	TTAA	2 cut(s)	740, 933
MslI	CAYNNNNRTG	2 cut(s)	600, 606
MspA1I	CMGCKG	2 cut(s)	358, 1022
MspR9I	CCNGG	3 cut(s)	234, 386, 747
Mva1269I	GAATGC	1 cut(s)	35
MvaI	CCWGG	3 cut(s)	234, 386, 747
MvnI	CGCG	1 cut(s)	484
MwoI	GCNNNNNNNGC	2 cut(s)	1028, 1037
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	3 cut(s)	118, 676, 810
NlaIII	CATG	4 cut(s)	605, 635, 769, 858
NlaIV	GGNNCC	2 cut(s)	585, 785
NsiI	ATGCAT	1 cut(s)	856
NspI	RCATGY	2 cut(s)	605, 635
PaeI	GCATGC	1 cut(s)	635
PceI	AGGCCT	1 cut(s)	745
PctI	GAATGC	1 cut(s)	35
PdmI	GAANNNNTTC	2 cut(s)	70, 264
PfeI	GAWTC	4 cut(s)	173, 418, 668, 1073
PkrI	GCNGC	2 cut(s)	1024, 1100
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
PpuMI	RGGWCCY	2 cut(s)	583, 686
Psp5II	RGGWCCY	2 cut(s)	583, 686
Psp6I	CCWGG	3 cut(s)	232, 384, 745
PspGI	CCWGG	3 cut(s)	232, 384, 745
PspN4I	GGNNCC	2 cut(s)	585, 785
PspPI	GGNCC	3 cut(s)	583, 686, 917
PspPPI	RGGWCCY	2 cut(s)	583, 686
PstNI	CAGNNNCTG	2 cut(s)	122, 680
PsuI	RGATCY	2 cut(s)	118, 676
PvuII	CAGCTG	2 cut(s)	358, 1022
RseI	CAYNNNNRTG	2 cut(s)	600, 606
SaqAI	TTAA	2 cut(s)	740, 933
SatI	GCNGC	2 cut(s)	1023, 1099
Sau3AI	GATC	3 cut(s)	118, 676, 810
Sau96I	GGNCC	3 cut(s)	583, 686, 917
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	3 cut(s)	234, 386, 747
SfaNI	GCATC	5 cut(s)	121, 357, 601, 643, 1002
SfcI	CTRYAG	1 cut(s)	681
SinI	GGWCC	2 cut(s)	583, 686
SmiMI	CAYNNNNRTG	2 cut(s)	600, 606
SmlI	CTYRAG	2 cut(s)	625, 693
SmoI	CTYRAG	2 cut(s)	625, 693
SphI	GCATGC	1 cut(s)	635
Sse9I	AATT	2 cut(s)	620, 660
SseBI	AGGCCT	1 cut(s)	745
SsiI	CCGC	3 cut(s)	462, 750, 1098
SspMI	CTAG	4 cut(s)	108, 198, 732, 1108
StuI	AGGCCT	1 cut(s)	745
StyD4I	CCNGG	3 cut(s)	232, 384, 745
TaaI	ACNGT	1 cut(s)	151
TaqI	TCGA	1 cut(s)	416
TasI	AATT	2 cut(s)	620, 660
TauI	GCSGC	1 cut(s)	1101
TfiI	GAWTC	4 cut(s)	173, 418, 668, 1073
Tru1I	TTAA	2 cut(s)	740, 933
Tru9I	TTAA	2 cut(s)	740, 933
TscAI	CASTG	1 cut(s)	255
TseI	GCWGC	1 cut(s)	1022
TspDTI	ATGAA	1 cut(s)	660
TspGWI	ACGGA	1 cut(s)	1058
TspRI	CASTG	1 cut(s)	255
VpaK11BI	GGWCC	2 cut(s)	583, 686
XapI	RAATTY	1 cut(s)	620
XceI	RCATGY	2 cut(s)	605, 635
XcmI	CCANNNNNNNNNTGG	2 cut(s)	602, 958
XmnI	GAANNNNTTC	2 cut(s)	70, 264
XspI	CTAG	4 cut(s)	108, 198, 732, 1108
Zsp2I	ATGCAT	1 cut(s)	856

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.