Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0011599

Physical Location & Seq

Genomic Coordinates Reverse (-)

23395991 .. 23397253

Gene Structure 1263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g32570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGAGAGGGAAGCAGAAATCCTAGAGACGCATACTAGTGCAAAAAGGAAGAAGAATAACAAGAGCCAGAATAGTAGGAGGTTTAGTGATGAGCAGATCAAGTTGCTGGAGTCTATATTTGAAGCAGATTCAAAGCTAGAGCCAAGGAGGAAAGTGCAAGTAGCAAGAGAGCTGGGGCTGCAGCCGCGCCAGGTTGCGATATGGTTTCAGAACAGAAGAGCTAGATGGAAGTCGAAGCAAATCGAGCAAGACTTCAGAACTCTCAGAAATGAGTATGACTTGTTAGCATCTAAGTTTGAGTCTTTGAAGGAGGAAAAACAATCCTTGCTTATACAGTTGGAGAAGCTAAATGATCTTATGGGAAAACCGAAAGATCATGATGAGAAGCTAAATGATCTTATGGGAAAACCGAAAGATCATGATGCCGACACAGATGGTAAAGATCTGGAAGGCTCAAGTAGTAAAGACGGAAATTGTGAGACTACAGAAGAAAAGCCAAGTCACTTGCAGTCACACAAGAATATTGCAAGTAATGATGTTGGGGATGAAGGTCAGGATCAGCTTATGAACATGTGTCAAGTAGAAGCTATACCTGAAGATTGGAATAGATTTGATTCAGGCTGTCTGTTTGATCCGTTGCGTAGCAGTAGTGCTACATCACAGTGGTTCAATTTCTGGATTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

229

Amino Acids

26.56

Weight (kDa)

5.54

Isoelectric Point (pI)

56.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	27 - 77	7e-17	Homeodomain
HALZ	PF02183	79 - 120	1e-12	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011599)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32570
malus_domestica	MD01G1226600.v1.1 MD07G1297100.v1.1
prunus_persica	Prupe.2G316600_v2.0.a1
pyrus_communis	pycom01g23510 pycom07g26970
rosa_chinensis	RchiOBHm_Chr1g0382431
rosa_laevigata	RLG00000026179
rosa_multiflora	Rmu_co8377425.1_g000001 Rmu_sc0000110.1_g000047 Rmu_sc0003885.1_g000011
rosa_roxburghii	Rroxscaffold_4G00278110
rosa_rugosa	Rorug01G0434200 Rorug01G0434300.1 Rorug01G0434400
rosa_samantha	Rh1AG459000 Rh1BG415300 Rh1CG429400 Rh1DG447400
rosa_wichuraiana	Rw1G041200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	187
AciI	CCGC	1 cut(s)	185
AclWI	GGATC	2 cut(s)	564, 626
AcuI	CTGAAG	2 cut(s)	238, 615
AflIII	ACRYGT	1 cut(s)	570
AgsI	TTSAA	4 cut(s)	122, 132, 307, 670
AhlI	ACTAGT	1 cut(s)	35
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	7 cut(s)	136, 172, 221, 346, 388, 562, 587
AluI	AGCT	7 cut(s)	136, 172, 221, 346, 388, 562, 587
Alw26I	GTCTC	2 cut(s)	20, 473
AlwI	GGATC	2 cut(s)	564, 626
ApeKI	GCWGC	2 cut(s)	178, 181
AspLEI	GCGC	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	165, 193
BccI	CCATC	2 cut(s)	219, 428
BciT130I	CCWGG	1 cut(s)	191
BcoDI	GTCTC	2 cut(s)	20, 473
BcuI	ACTAGT	1 cut(s)	35
BfaI	CTAG	4 cut(s)	23, 36, 137, 222
BfmI	CTRYAG	2 cut(s)	179, 483
BglII	AGATCT	1 cut(s)	442
BisI	GCNGC	3 cut(s)	179, 182, 185
BlsI	GCNGC	3 cut(s)	180, 183, 186
Bme1390I	CCNGG	1 cut(s)	191
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	2 cut(s)	296, 412
BpmI	CTGGAG	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	439
BsaJI	CCNNGG	1 cut(s)	143
BsaXI	ACNNNNNCTCC	2 cut(s)	70, 100
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	143
BseGI	GGATG	1 cut(s)	550
BseMII	CTCAG	1 cut(s)	277
BseXI	GCAGC	2 cut(s)	165, 193
BseYI	CCCAGC	1 cut(s)	172
Bsh1236I	CGCG	1 cut(s)	187
BsmAI	GTCTC	2 cut(s)	20, 473
BsmBI	CGTCTC	1 cut(s)	20
Bsp143I	GATC	8 cut(s)	96, 352, 373, 394, 415, 442, 556, 631
BspACI	CCGC	1 cut(s)	185
BspCNI	CTCAG	1 cut(s)	276
BspFNI	CGCG	1 cut(s)	187
BspHI	TCATGA	2 cut(s)	376, 418
BspMAI	CTGCAG	1 cut(s)	183
BspPI	GGATC	2 cut(s)	564, 626
BspQI	GCTCTTC	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	143
BssMI	GATC	8 cut(s)	96, 352, 373, 394, 415, 442, 556, 631
BssT1I	CCWWGG	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	2 cut(s)	336, 663
Bst6I	CTCTTC	1 cut(s)	211
BstDEI	CTNAG	2 cut(s)	263, 291
BstF5I	GGATG	1 cut(s)	550
BstFNI	CGCG	1 cut(s)	187
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	8 cut(s)	99, 355, 376, 397, 418, 445, 559, 634
BstMAI	GTCTC	2 cut(s)	20, 473
BstMBI	GATC	8 cut(s)	96, 352, 373, 394, 415, 442, 556, 631
BstMWI	GCNNNNNNNGC	3 cut(s)	178, 184, 244
BstNI	CCWGG	1 cut(s)	191
BstNSI	RCATGY	1 cut(s)	574
BstSCI	CCNGG	1 cut(s)	189
BstSFI	CTRYAG	2 cut(s)	179, 483
BstUI	CGCG	1 cut(s)	187
BstV1I	GCAGC	2 cut(s)	165, 193
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
BtsCI	GGATG	1 cut(s)	550
BtsIMutI	CAGTG	1 cut(s)	668
CciI	TCATGA	2 cut(s)	376, 418
CfoI	GCGC	1 cut(s)	189
CseI	GACGC	1 cut(s)	37
CviAII	CATG	3 cut(s)	377, 419, 571
DdeI	CTNAG	2 cut(s)	263, 291
DpnI	GATC	8 cut(s)	98, 354, 375, 396, 417, 444, 558, 633
DpnII	GATC	8 cut(s)	96, 352, 373, 394, 415, 442, 556, 631
Eam1104I	CTCTTC	1 cut(s)	211
EarI	CTCTTC	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	143
Eco57I	CTGAAG	2 cut(s)	238, 615
EcoRII	CCWGG	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	143
ErhI	CCWWGG	1 cut(s)	143
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	3 cut(s)	380, 422, 574
FatI	CATG	3 cut(s)	376, 418, 570
Fnu4HI	GCNGC	3 cut(s)	179, 182, 185
FokI	GGATG	1 cut(s)	557
Fsp4HI	GCNGC	3 cut(s)	179, 182, 185
FspBI	CTAG	4 cut(s)	23, 36, 137, 222
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	3 cut(s)	179, 182, 185
GsaI	CCCAGC	1 cut(s)	176
GsuI	CTGGAG	1 cut(s)	128
HgaI	GACGC	1 cut(s)	37
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	3 cut(s)	380, 422, 574
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HinfI	GANTC	4 cut(s)	110, 128, 299, 614
Hpy188I	TCNGA	3 cut(s)	210, 257, 266
Hpy188III	TCNNGA	5 cut(s)	377, 419, 446, 554, 676
HpyAV	CCTTC	3 cut(s)	301, 443, 542
HpyCH4III	ACNGT	2 cut(s)	336, 663
HpyCH4V	TGCA	5 cut(s)	41, 157, 181, 508, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	178, 184, 244
HpyF3I	CTNAG	2 cut(s)	263, 291
Hsp92II	CATG	3 cut(s)	380, 422, 574
HspAI	GCGC	1 cut(s)	187
Kzo9I	GATC	8 cut(s)	96, 352, 373, 394, 415, 442, 556, 631
LguI	GCTCTTC	1 cut(s)	211
Lsp1109I	GCAGC	2 cut(s)	165, 193
LweI	GCATC	2 cut(s)	296, 412
MaeI	CTAG	4 cut(s)	23, 36, 137, 222
MaeIII	GTNAC	2 cut(s)	500, 510
MalI	GATC	8 cut(s)	98, 354, 375, 396, 417, 444, 558, 633
MboI	GATC	8 cut(s)	96, 352, 373, 394, 415, 442, 556, 631
MboII	GAAGA	5 cut(s)	61, 64, 228, 500, 608
MflI	RGATCY	1 cut(s)	442
MluCI	AATT	2 cut(s)	472, 670
MlyI	GAGTC	2 cut(s)	119, 308
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	3 cut(s)	72, 141, 304
MseI	TTAA	1 cut(s)	681
MslI	CAYNNNNRTG	2 cut(s)	36, 661
MspR9I	CCNGG	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	191
MvnI	CGCG	1 cut(s)	187
MwoI	GCNNNNNNNGC	3 cut(s)	178, 184, 244
NdeII	GATC	8 cut(s)	96, 352, 373, 394, 415, 442, 556, 631
NlaIII	CATG	3 cut(s)	380, 422, 574
NmuCI	GTSAC	2 cut(s)	500, 510
NspI	RCATGY	1 cut(s)	574
PagI	TCATGA	2 cut(s)	376, 418
PciI	ACATGT	1 cut(s)	570
PciSI	GCTCTTC	1 cut(s)	211
PfeI	GAWTC	2 cut(s)	128, 614
PkrI	GCNGC	3 cut(s)	180, 183, 186
PleI	GAGTC	2 cut(s)	118, 307
PpsI	GAGTC	2 cut(s)	118, 307
PscI	ACATGT	1 cut(s)	570
Psp6I	CCWGG	1 cut(s)	189
PspFI	CCCAGC	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	189
PstI	CTGCAG	1 cut(s)	183
PsuI	RGATCY	1 cut(s)	442
RseI	CAYNNNNRTG	2 cut(s)	36, 661
SapI	GCTCTTC	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	681
SatI	GCNGC	3 cut(s)	179, 182, 185
Sau3AI	GATC	8 cut(s)	96, 352, 373, 394, 415, 442, 556, 631
SchI	GAGTC	2 cut(s)	119, 308
ScrFI	CCNGG	1 cut(s)	191
SfaNI	GCATC	2 cut(s)	296, 412
SfcI	CTRYAG	2 cut(s)	179, 483
SmiMI	CAYNNNNRTG	2 cut(s)	36, 661
SmlI	CTYRAG	1 cut(s)	454
SmoI	CTYRAG	1 cut(s)	454
SpeI	ACTAGT	1 cut(s)	35
Sse9I	AATT	2 cut(s)	472, 670
SsiI	CCGC	1 cut(s)	185
SspI	AATATT	1 cut(s)	523
SspMI	CTAG	4 cut(s)	23, 36, 137, 222
StyD4I	CCNGG	1 cut(s)	189
StyI	CCWWGG	1 cut(s)	143
TaaI	ACNGT	2 cut(s)	336, 663
TaqI	TCGA	2 cut(s)	233, 243
TasI	AATT	2 cut(s)	472, 670
TauI	GCSGC	1 cut(s)	187
TfiI	GAWTC	2 cut(s)	128, 614
Tru1I	TTAA	1 cut(s)	681
Tru9I	TTAA	1 cut(s)	681
TscAI	CASTG	1 cut(s)	668
TseFI	GTSAC	2 cut(s)	500, 510
TseI	GCWGC	2 cut(s)	178, 181
Tsp45I	GTSAC	2 cut(s)	500, 510
TspDTI	ATGAA	2 cut(s)	561, 581
TspGWI	ACGGA	2 cut(s)	483, 624
TspRI	CASTG	1 cut(s)	668
XceI	RCATGY	1 cut(s)	574
XspI	CTAG	4 cut(s)	23, 36, 137, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.