Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0011599

Physical Location & Seq

Genomic Coordinates Reverse (-)

29687566 .. 29689086

Gene Structure 1521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G316600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGAGAAGACAGAGTGCTCTGAAGCAGAAAACTTTGGTTCTGTGACCACTAGCCTAGAACCACAGGCTACTGCCAAGAGGAAGAAAAACAAGAGCAAAAACCAGAGGAGGTTTAGCGATGAGCAAATCGGGTTGTTAGAGTCCATATTCGAAGCGGACTCAAAGCTCGAGCCAAGGAGGAAGGTGCAGGTTGCAAGAGAGCTTGGGCTGCAGCCTCGCCAGGTTGCCATATGGTTTCAGAACAGAAGAGCTAGATGGAAGTCGAAGCAAATAGAGCAAGACTTCAGAACACTCAGGGCTGATTATGACAACTTAGCATCACGTTTTGAATCTTTAAAGGAGGAGAAGCAGTCCTTGCTTATGCAGATGCAGAAGCTAAATGAAGTTGTGGGAAAACCTAGTCAAGGGTTGGAAGGAAACATCATGGCTGATGGCTCGAGACTAGATGAGGAATTAGAGCCGAGAGGAGTGATACAGTCACACAAGAACAATACAAGCAATGATGTTGGGTGCCATGGAGACGAAATACATGAGCTTCTGAGCGTGGCTCATGTGGATGCCTCCTCTTTGTCACCTCAAGATTGGCATAGATTTGATCCAAGCATCCTGTTCGATCCGTCGCGTTTTACTAGTTCACACTGGTTAAATTTCTGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

220

Amino Acids

25.27

Weight (kDa)

6.33

Isoelectric Point (pI)

61.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011599)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32570
malus_domestica	MD01G1226600.v1.1 MD07G1297100.v1.1
prunus_persica	Prupe.2G316600_v2.0.a1
pyrus_communis	pycom01g23510 pycom07g26970
rosa_chinensis	RchiOBHm_Chr1g0382431
rosa_laevigata	RLG00000026179
rosa_multiflora	Rmu_co8377425.1_g000001 Rmu_sc0000110.1_g000047 Rmu_sc0003885.1_g000011
rosa_roxburghii	Rroxscaffold_4G00278110
rosa_rugosa	Rorug01G0434200 Rorug01G0434300.1 Rorug01G0434400
rosa_samantha	Rh1AG459000 Rh1BG415300 Rh1CG429400 Rh1DG447400
rosa_wichuraiana	Rw1G041200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	178
AccB1I	GGYRCC	1 cut(s)	510
AccII	CGCG	1 cut(s)	622
AciI	CCGC	1 cut(s)	155
AclWI	GGATC	2 cut(s)	590, 608
AcsI	RAATTY	1 cut(s)	646
AcuI	CTGAAG	2 cut(s)	42, 268
AfiI	CCNNNNNNNGG	1 cut(s)	404
AgsI	TTSAA	1 cut(s)	329
AhlI	ACTAGT	1 cut(s)	629
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	5 cut(s)	166, 202, 251, 376, 535
AluI	AGCT	5 cut(s)	166, 202, 251, 376, 535
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	2 cut(s)	433, 513
AlwI	GGATC	2 cut(s)	590, 608
Ama87I	CYCGRG	2 cut(s)	167, 436
ApeKI	GCWGC	2 cut(s)	208, 211
ApoI	RAATTY	1 cut(s)	646
AsuHPI	GGTGA	1 cut(s)	564
AsuII	TTCGAA	1 cut(s)	150
AvaI	CYCGRG	2 cut(s)	167, 436
BanI	GGYRCC	1 cut(s)	510
BbsI	GAAGAC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	20
BbvI	GCAGC	2 cut(s)	195, 223
BccI	CCATC	2 cut(s)	249, 425
BcgI	CGANNNNNNTGC	2 cut(s)	592, 626
BciT130I	CCWGG	1 cut(s)	221
BcoDI	GTCTC	2 cut(s)	433, 513
BcuI	ACTAGT	1 cut(s)	629
BfaI	CTAG	6 cut(s)	51, 56, 252, 399, 443, 630
BfmI	CTRYAG	1 cut(s)	209
BfuAI	ACCTGC	1 cut(s)	178
BisI	GCNGC	2 cut(s)	209, 212
BlsI	GCNGC	2 cut(s)	210, 213
Bme1390I	CCNGG	1 cut(s)	221
BmeT110I	CYCGRG	2 cut(s)	167, 436
BmiI	GGNNCC	1 cut(s)	512
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	4 cut(s)	326, 357, 547, 612
BpiI	GAAGAC	1 cut(s)	14
BplI	GAGNNNNNCTC	2 cut(s)	532, 564
Bpu14I	TTCGAA	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	561
BsaJI	CCNNGG	2 cut(s)	173, 514
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	1 cut(s)	404
Bse1I	ACTGG	1 cut(s)	644
Bse3DI	GCAATG	1 cut(s)	505
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	2 cut(s)	173, 514
BseGI	GGATG	2 cut(s)	562, 603
BseLI	CCNNNNNNNGG	1 cut(s)	404
BseMI	GCAATG	1 cut(s)	505
BseMII	CTCAG	2 cut(s)	307, 530
BseNI	ACTGG	1 cut(s)	644
BseRI	GAGGAG	4 cut(s)	121, 356, 480, 553
BseXI	GCAGC	2 cut(s)	195, 223
BsgI	GTGCAG	1 cut(s)	206
Bsh1236I	CGCG	1 cut(s)	622
BshNI	GGYRCC	1 cut(s)	510
BsiHKAI	GWGCWC	1 cut(s)	20
BsiHKCI	CYCGRG	2 cut(s)	167, 436
BslI	CCNNNNNNNGG	1 cut(s)	404
BsmAI	GTCTC	2 cut(s)	433, 513
BsmBI	CGTCTC	1 cut(s)	513
BsoBI	CYCGRG	2 cut(s)	167, 436
Bsp119I	TTCGAA	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	2 cut(s)	595, 613
Bsp19I	CCATGG	1 cut(s)	514
BspACI	CCGC	1 cut(s)	155
BspCNI	CTCAG	2 cut(s)	306, 531
BspFNI	CGCG	1 cut(s)	622
BspLI	GGNNCC	1 cut(s)	512
BspMAI	CTGCAG	1 cut(s)	213
BspMI	ACCTGC	1 cut(s)	178
BspPI	GGATC	2 cut(s)	590, 608
BspQI	GCTCTTC	1 cut(s)	241
BspT104I	TTCGAA	1 cut(s)	150
BspT107I	GGYRCC	1 cut(s)	510
BsrDI	GCAATG	1 cut(s)	505
BsrI	ACTGG	1 cut(s)	644
BssECI	CCNNGG	2 cut(s)	173, 514
BssMI	GATC	2 cut(s)	595, 613
BssT1I	CCWWGG	2 cut(s)	173, 514
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	477
Bst6I	CTCTTC	1 cut(s)	241
BstAPI	GCANNNNNTGC	1 cut(s)	355
BstBI	TTCGAA	1 cut(s)	150
BstDEI	CTNAG	3 cut(s)	293, 313, 539
BstDSI	CCRYGG	1 cut(s)	514
BstENI	CCTNNNNNAGG	1 cut(s)	402
BstF5I	GGATG	2 cut(s)	562, 603
BstFNI	CGCG	1 cut(s)	622
BstKTI	GATC	2 cut(s)	598, 616
BstMAI	GTCTC	2 cut(s)	433, 513
BstMBI	GATC	2 cut(s)	595, 613
BstMWI	GCNNNNNNNGC	3 cut(s)	208, 274, 355
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	219
BstSFI	CTRYAG	1 cut(s)	209
BstUI	CGCG	1 cut(s)	622
BstV1I	GCAGC	2 cut(s)	195, 223
BstV2I	GAAGAC	1 cut(s)	14
BtgI	CCRYGG	1 cut(s)	514
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	562, 603
BtsIMutI	CAGTG	1 cut(s)	637
BveI	ACCTGC	1 cut(s)	178
CviAII	CATG	4 cut(s)	424, 515, 530, 551
DdeI	CTNAG	3 cut(s)	293, 313, 539
DpnI	GATC	2 cut(s)	597, 615
DpnII	GATC	2 cut(s)	595, 613
DraI	TTTAAA	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	241
Eco130I	CCWWGG	2 cut(s)	173, 514
Eco57I	CTGAAG	2 cut(s)	42, 268
Eco88I	CYCGRG	2 cut(s)	167, 436
EcoNI	CCTNNNNNAGG	1 cut(s)	402
EcoRII	CCWGG	1 cut(s)	219
EcoT14I	CCWWGG	2 cut(s)	173, 514
ErhI	CCWWGG	2 cut(s)	173, 514
Esp3I	CGTCTC	1 cut(s)	513
FaeI	CATG	4 cut(s)	427, 518, 533, 554
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FatI	CATG	4 cut(s)	423, 514, 529, 550
FauNDI	CATATG	1 cut(s)	230
Fnu4HI	GCNGC	2 cut(s)	209, 212
FokI	GGATG	2 cut(s)	569, 590
Fsp4HI	GCNGC	2 cut(s)	209, 212
FspBI	CTAG	6 cut(s)	51, 56, 252, 399, 443, 630
GluI	GCNGC	2 cut(s)	209, 212
Hin1II	CATG	4 cut(s)	427, 518, 533, 554
HinfI	GANTC	3 cut(s)	140, 158, 329
HphI	GGTGA	1 cut(s)	564
Hpy166II	GTNNAC	1 cut(s)	635
Hpy188I	TCNGA	4 cut(s)	22, 240, 287, 540
Hpy188III	TCNNGA	3 cut(s)	438, 578, 652
Hpy8I	GTNNAC	1 cut(s)	635
Hpy99I	CGWCG	1 cut(s)	622
HpyAV	CCTTC	2 cut(s)	175, 407
HpyCH4III	ACNGT	1 cut(s)	477
HpyCH4IV	ACGT	1 cut(s)	322
HpyCH4V	TGCA	5 cut(s)	187, 194, 211, 364, 370
HpyF10VI	GCNNNNNNNGC	3 cut(s)	208, 274, 355
HpyF3I	CTNAG	3 cut(s)	293, 313, 539
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	4 cut(s)	427, 518, 533, 554
Kzo9I	GATC	2 cut(s)	595, 613
LguI	GCTCTTC	1 cut(s)	241
LpnPI	CCDG	9 cut(s)	50, 116, 173, 206, 233, 280, 620, 625, 637
Lsp1109I	GCAGC	2 cut(s)	195, 223
LweI	GCATC	4 cut(s)	326, 357, 547, 612
MaeI	CTAG	6 cut(s)	51, 56, 252, 399, 443, 630
MaeII	ACGT	1 cut(s)	322
MaeIII	GTNAC	3 cut(s)	43, 477, 570
MalI	GATC	2 cut(s)	597, 615
MboI	GATC	2 cut(s)	595, 613
MboII	GAAGA	3 cut(s)	19, 94, 258
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	2 cut(s)	452, 646
MlyI	GAGTC	2 cut(s)	149, 152
MmeI	TCCRAC	1 cut(s)	390
MseI	TTAA	2 cut(s)	335, 644
MslI	CAYNNNNRTG	1 cut(s)	555
MspR9I	CCNGG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	221
MvnI	CGCG	1 cut(s)	622
MwoI	GCNNNNNNNGC	3 cut(s)	208, 274, 355
NcoI	CCATGG	1 cut(s)	514
NdeI	CATATG	1 cut(s)	230
NdeII	GATC	2 cut(s)	595, 613
NlaIII	CATG	4 cut(s)	427, 518, 533, 554
NlaIV	GGNNCC	1 cut(s)	512
NmeAIII	GCCGAG	1 cut(s)	486
NmuCI	GTSAC	3 cut(s)	43, 477, 570
NspV	TTCGAA	1 cut(s)	150
PaeR7I	CTCGAG	2 cut(s)	167, 436
PciSI	GCTCTTC	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	329
PkrI	GCNGC	2 cut(s)	210, 213
PleI	GAGTC	2 cut(s)	148, 152
PpsI	GAGTC	2 cut(s)	148, 152
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	512
PspXI	VCTCGAGB	1 cut(s)	167
PstI	CTGCAG	1 cut(s)	213
RseI	CAYNNNNRTG	1 cut(s)	555
SapI	GCTCTTC	1 cut(s)	241
SaqAI	TTAA	2 cut(s)	335, 644
SatI	GCNGC	2 cut(s)	209, 212
Sau3AI	GATC	2 cut(s)	595, 613
SchI	GAGTC	2 cut(s)	149, 152
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	20
SfaNI	GCATC	4 cut(s)	326, 357, 547, 612
SfcI	CTRYAG	1 cut(s)	209
Sfr274I	CTCGAG	2 cut(s)	167, 436
SfuI	TTCGAA	1 cut(s)	150
SlaI	CTCGAG	2 cut(s)	167, 436
SmiMI	CAYNNNNRTG	1 cut(s)	555
SmlI	CTYRAG	3 cut(s)	167, 436, 576
SmoI	CTYRAG	3 cut(s)	167, 436, 576
SpeI	ACTAGT	1 cut(s)	629
Sse9I	AATT	2 cut(s)	452, 646
SsiI	CCGC	1 cut(s)	155
SspMI	CTAG	6 cut(s)	51, 56, 252, 399, 443, 630
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	2 cut(s)	173, 514
TaaI	ACNGT	1 cut(s)	477
TaiI	ACGT	1 cut(s)	325
TaqI	TCGA	5 cut(s)	150, 168, 263, 437, 612
TasI	AATT	2 cut(s)	452, 646
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	2 cut(s)	335, 644
Tru9I	TTAA	2 cut(s)	335, 644
TscAI	CASTG	1 cut(s)	644
TseFI	GTSAC	3 cut(s)	43, 477, 570
TseI	GCWGC	2 cut(s)	208, 211
Tsp45I	GTSAC	3 cut(s)	43, 477, 570
TspDTI	ATGAA	1 cut(s)	396
TspGWI	ACGGA	1 cut(s)	606
TspRI	CASTG	1 cut(s)	644
XagI	CCTNNNNNAGG	1 cut(s)	402
XapI	RAATTY	1 cut(s)	646
XhoI	CTCGAG	2 cut(s)	167, 436
XspI	CTAG	6 cut(s)	51, 56, 252, 399, 443, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.