Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0011599

Physical Location & Seq

Genomic Coordinates Forward (+)

1023729 .. 1024457

Gene Structure 729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026179

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGAGAGGGAAGTAGAAAGCCTAGAGACGCATTCTACTGCGAAAAGGAAGAAGAATAACAAGAGCCAGAATAGTAGGAGGTTTAGTGATGAGCAGATCAAGTTGTTGGAGTCGATATTCGAAGCAGATTCGAAGCTTGAGCCAAGGAGGAAAGTGCAGGTGGCAAGAGAGCTGGGCCTGCAGCCGCGCCAGGTTGCTATATGGTTTCAGAACAGAAGAGCTAGATGGAAGTCGAAGCAAATCGAGCAAGACTTTAGAACACTCAGAAATGAGTATGACTTGTTAGCATCTAAGTTTGAGTCTTTGAAGGAGGAAAAGCAATCCTTGCTTATACAGTTGAAGAAGCTAAATGATCTCATGGGAAAAACAAAAGTTCATGAAGAGAACATGGATGGTAAAGATTTGGAAGGCTCAAGTAACAAAGACGGAGATTGTGAGACTACAGAAGAAAAGCCAAGTCACTTACAGTCCCACAAGAATTTTGCAAGTGATGATGTTGGGAATGAAGGTCATGAGCAGCTTATGAACATGTGTCAAGTAGGAGCTATAGTGTCACCTGAAGATTGGCACAGATTTGATTCAGGCGGTCTGTTTGATCCTCCGCGTAGCAGCAGTGCTACTTCACAATGGTTAAATTTCTGGATTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

217

Amino Acids

25.15

Weight (kDa)

6.34

Isoelectric Point (pI)

60.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	27 - 77	6.4e-17	Homeodomain
HALZ	PF02183	79 - 120	1.2e-12	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011599)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32570
malus_domestica	MD01G1226600.v1.1 MD07G1297100.v1.1
prunus_persica	Prupe.2G316600_v2.0.a1
pyrus_communis	pycom01g23510 pycom07g26970
rosa_chinensis	RchiOBHm_Chr1g0382431
rosa_laevigata	RLG00000026179
rosa_multiflora	Rmu_co8377425.1_g000001 Rmu_sc0000110.1_g000047 Rmu_sc0003885.1_g000011
rosa_roxburghii	Rroxscaffold_4G00278110
rosa_rugosa	Rorug01G0434200 Rorug01G0434300.1 Rorug01G0434400
rosa_samantha	Rh1AG459000 Rh1BG415300 Rh1CG429400 Rh1DG447400
rosa_wichuraiana	Rw1G041200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	148
Acc36I	ACCTGC	1 cut(s)	148
AccII	CGCG	2 cut(s)	187, 604
AciI	CCGC	3 cut(s)	185, 585, 602
AclWI	GGATC	1 cut(s)	590
AcsI	RAATTY	2 cut(s)	478, 634
AcuI	CTGAAG	1 cut(s)	579
AflIII	ACRYGT	1 cut(s)	528
AgsI	TTSAA	2 cut(s)	307, 340
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	6 cut(s)	136, 172, 221, 346, 520, 545
AluI	AGCT	6 cut(s)	136, 172, 221, 346, 520, 545
Alw26I	GTCTC	2 cut(s)	20, 431
AlwI	GGATC	1 cut(s)	590
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	3 cut(s)	181, 517, 609
ApoI	RAATTY	2 cut(s)	478, 634
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	546
AsuII	TTCGAA	2 cut(s)	120, 131
BbvI	GCAGC	3 cut(s)	193, 529, 621
BccI	CCATC	2 cut(s)	219, 386
BciT130I	CCWGG	1 cut(s)	191
BcoDI	GTCTC	2 cut(s)	20, 431
BfaI	CTAG	2 cut(s)	23, 222
BfmI	CTRYAG	3 cut(s)	179, 441, 546
BfuAI	ACCTGC	1 cut(s)	148
BisI	GCNGC	4 cut(s)	182, 185, 518, 610
BlsI	GCNGC	4 cut(s)	183, 186, 519, 611
Bme1390I	CCNGG	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	1 cut(s)	296
Bpu14I	TTCGAA	2 cut(s)	120, 131
BpuEI	CTTGAG	2 cut(s)	158, 397
BsaJI	CCNNGG	1 cut(s)	143
BsaXI	ACNNNNNCTCC	4 cut(s)	70, 100, 534, 564
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	143
BseGI	GGATG	1 cut(s)	397
BseMII	CTCAG	1 cut(s)	277
BseXI	GCAGC	3 cut(s)	193, 529, 621
BseYI	CCCAGC	1 cut(s)	172
BsgI	GTGCAG	1 cut(s)	176
Bsh1236I	CGCG	2 cut(s)	187, 604
BshFI	GGCC	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	454
BsmAI	GTCTC	2 cut(s)	20, 431
BsmBI	CGTCTC	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	454
BsmI	GAATGC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	177
Bsp119I	TTCGAA	2 cut(s)	120, 131
Bsp143I	GATC	3 cut(s)	96, 352, 595
BspACI	CCGC	3 cut(s)	185, 585, 602
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	1 cut(s)	276
BspFNI	CGCG	2 cut(s)	187, 604
BspHI	TCATGA	2 cut(s)	376, 511
BspMAI	CTGCAG	1 cut(s)	183
BspMI	ACCTGC	1 cut(s)	148
BspPI	GGATC	1 cut(s)	590
BspQI	GCTCTTC	1 cut(s)	211
BspT104I	TTCGAA	2 cut(s)	120, 131
BssECI	CCNNGG	1 cut(s)	143
BssMI	GATC	3 cut(s)	96, 352, 595
BssT1I	CCWWGG	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	2 cut(s)	336, 468
Bst6I	CTCTTC	2 cut(s)	211, 375
BstAPI	GCANNNNNTGC	1 cut(s)	325
BstBI	TTCGAA	2 cut(s)	120, 131
BstC8I	GCNNGC	1 cut(s)	179
BstDEI	CTNAG	2 cut(s)	263, 291
BstF5I	GGATG	1 cut(s)	397
BstFNI	CGCG	2 cut(s)	187, 604
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	3 cut(s)	99, 355, 598
BstMAI	GTCTC	2 cut(s)	20, 431
BstMBI	GATC	3 cut(s)	96, 352, 595
BstMWI	GCNNNNNNNGC	3 cut(s)	178, 244, 325
BstNI	CCWGG	1 cut(s)	191
BstNSI	RCATGY	1 cut(s)	532
BstSCI	CCNGG	1 cut(s)	189
BstSFI	CTRYAG	3 cut(s)	179, 441, 546
BstUI	CGCG	2 cut(s)	187, 604
BstV1I	GCAGC	3 cut(s)	193, 529, 621
BsuRI	GGCC	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	397
BtsI	GCAGTG	1 cut(s)	619
BtsIMutI	CAGTG	1 cut(s)	619
BveI	ACCTGC	1 cut(s)	148
Cac8I	GCNNGC	1 cut(s)	179
CciI	TCATGA	2 cut(s)	376, 511
CfoI	GCGC	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	175
CseI	GACGC	1 cut(s)	37
CviAII	CATG	5 cut(s)	358, 377, 388, 512, 529
DdeI	CTNAG	2 cut(s)	263, 291
DpnI	GATC	3 cut(s)	98, 354, 597
DpnII	GATC	3 cut(s)	96, 352, 595
Eam1104I	CTCTTC	2 cut(s)	211, 375
EarI	CTCTTC	2 cut(s)	211, 375
Eco130I	CCWWGG	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	579
EcoRII	CCWGG	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	143
ErhI	CCWWGG	1 cut(s)	143
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	5 cut(s)	361, 380, 391, 515, 532
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	5 cut(s)	357, 376, 387, 511, 528
Fnu4HI	GCNGC	4 cut(s)	182, 185, 518, 610
FokI	GGATG	1 cut(s)	404
Fsp4HI	GCNGC	4 cut(s)	182, 185, 518, 610
FspBI	CTAG	2 cut(s)	23, 222
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	4 cut(s)	182, 185, 518, 610
GsaI	CCCAGC	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	177
HgaI	GACGC	1 cut(s)	37
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	5 cut(s)	361, 380, 391, 515, 532
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	4 cut(s)	110, 128, 299, 578
HphI	GGTGA	1 cut(s)	546
Hpy188I	TCNGA	2 cut(s)	210, 266
Hpy188III	TCNNGA	3 cut(s)	377, 512, 640
HpyAV	CCTTC	3 cut(s)	301, 401, 500
HpyCH4III	ACNGT	2 cut(s)	336, 468
HpyCH4V	TGCA	3 cut(s)	157, 181, 485
HpyF10VI	GCNNNNNNNGC	3 cut(s)	178, 244, 325
HpyF3I	CTNAG	2 cut(s)	263, 291
Hsp92II	CATG	5 cut(s)	361, 380, 391, 515, 532
HspAI	GCGC	1 cut(s)	187
Kzo9I	GATC	3 cut(s)	96, 352, 595
LguI	GCTCTTC	1 cut(s)	211
LmnI	GCTCC	1 cut(s)	542
LpnPI	CCDG	9 cut(s)	80, 143, 158, 176, 191, 203, 567, 570, 625
Lsp1109I	GCAGC	3 cut(s)	193, 529, 621
LweI	GCATC	1 cut(s)	296
MaeI	CTAG	2 cut(s)	23, 222
MaeIII	GTNAC	3 cut(s)	416, 458, 552
MalI	GATC	3 cut(s)	98, 354, 597
MboI	GATC	3 cut(s)	96, 352, 595
MboII	GAAGA	7 cut(s)	61, 64, 228, 352, 392, 458, 572
MluCI	AATT	2 cut(s)	478, 634
MlyI	GAGTC	2 cut(s)	119, 308
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	4 cut(s)	72, 141, 304, 609
MseI	TTAA	2 cut(s)	632, 645
MspR9I	CCNGG	1 cut(s)	191
Mva1269I	GAATGC	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	191
MvnI	CGCG	2 cut(s)	187, 604
MwoI	GCNNNNNNNGC	3 cut(s)	178, 244, 325
NdeII	GATC	3 cut(s)	96, 352, 595
NlaIII	CATG	5 cut(s)	361, 380, 391, 515, 532
NmuCI	GTSAC	2 cut(s)	458, 552
NspI	RCATGY	1 cut(s)	532
NspV	TTCGAA	2 cut(s)	120, 131
PagI	TCATGA	2 cut(s)	376, 511
PaqCI	CACCTGC	1 cut(s)	148
PciI	ACATGT	1 cut(s)	528
PciSI	GCTCTTC	1 cut(s)	211
PctI	GAATGC	1 cut(s)	31
PfeI	GAWTC	2 cut(s)	128, 578
PkrI	GCNGC	4 cut(s)	183, 186, 519, 611
PleI	GAGTC	2 cut(s)	118, 307
PpsI	GAGTC	2 cut(s)	118, 307
PscI	ACATGT	1 cut(s)	528
Psp6I	CCWGG	1 cut(s)	189
PspFI	CCCAGC	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	175
PstI	CTGCAG	1 cut(s)	183
SapI	GCTCTTC	1 cut(s)	211
SaqAI	TTAA	2 cut(s)	632, 645
SatI	GCNGC	4 cut(s)	182, 185, 518, 610
Sau3AI	GATC	3 cut(s)	96, 352, 595
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	2 cut(s)	119, 308
ScrFI	CCNGG	1 cut(s)	191
SfaNI	GCATC	1 cut(s)	296
SfcI	CTRYAG	3 cut(s)	179, 441, 546
SfuI	TTCGAA	2 cut(s)	120, 131
SmlI	CTYRAG	2 cut(s)	137, 412
SmoI	CTYRAG	2 cut(s)	137, 412
Sse9I	AATT	2 cut(s)	478, 634
SsiI	CCGC	3 cut(s)	185, 585, 602
SspMI	CTAG	2 cut(s)	23, 222
StyD4I	CCNGG	1 cut(s)	189
StyI	CCWWGG	1 cut(s)	143
TaaI	ACNGT	2 cut(s)	336, 468
TaqI	TCGA	5 cut(s)	113, 120, 131, 233, 243
TasI	AATT	2 cut(s)	478, 634
TauI	GCSGC	1 cut(s)	187
TfiI	GAWTC	2 cut(s)	128, 578
Tru1I	TTAA	2 cut(s)	632, 645
Tru9I	TTAA	2 cut(s)	632, 645
TscAI	CASTG	1 cut(s)	619
TseFI	GTSAC	2 cut(s)	458, 552
TseI	GCWGC	3 cut(s)	181, 517, 609
Tsp45I	GTSAC	2 cut(s)	458, 552
TspDTI	ATGAA	4 cut(s)	365, 393, 519, 539
TspGWI	ACGGA	1 cut(s)	441
TspRI	CASTG	1 cut(s)	619
XapI	RAATTY	2 cut(s)	478, 634
XceI	RCATGY	1 cut(s)	532
XspI	CTAG	2 cut(s)	23, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.