Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0011599

Physical Location & Seq

Genomic Coordinates Reverse (-)

35700408 .. 35701809

Gene Structure 1402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1297100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGAGAGGAGTAAAGAGGAGTGCTATGAAGAAGAAAACTTAGATTACGGCATAGAGCCACAGTCTGCGATGAAAAGGAAGAAGAACAAGAGCAAGAACACAAGGCGGTTTAGCGACGAACAAATCAGCTTGTTGGAGTCTATATTCGAAGCAGACTCGAAGCTCGAGCCAAGGAGGAAGGTGCAGTTGGCAAGAGAGCTTGGGCTGCAACCTCGCCAGGTTGCAATATGGTTTCAGAACAGAAGAGCTAGATGGAAGTCCAAACAGATAGAGCAGGATCTCAGAAGTCTCAGAGAAGATTATGACAAGTTAGCATCTCGGTTTGAATCTTTGAAGGAGGAGAAGCAGTCTTTGCTTATGCAGTTGCAGAAGTTACACGATCTTGTGGGAACATCTCGCGATGGCGCCCCTCCCGAAGATTCTCTCGCAAATCAGACGGCAGATGGATCGAGTTACAAAGAAGGGAATTGTAAGACTAGTGCTCGAGTAAGACTAGAAGAGGCATTGGAGCAGAGAGGAGCCATAGATTCACATACAAGCCATGATGTTGGTGGGGAGTTTGGAGATGAAATACACGATCTTCTGAACATTGGTCAATTGGATGCCTCTCTGACACCTCAAGGATTGCATAGGTTGGATTCAGGCAACATTCTGGTTGATCGTTGTAATTCACACTGGTTAAATTTCTGGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

232

Amino Acids

26.66

Weight (kDa)

5.78

Isoelectric Point (pI)

65.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	35 - 86	6.7e-18	Homeodomain
HALZ	PF02183	88 - 128	2e-11	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011599)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32570
malus_domestica	MD01G1226600.v1.1 MD07G1297100.v1.1
prunus_persica	Prupe.2G316600_v2.0.a1
pyrus_communis	pycom01g23510 pycom07g26970
rosa_chinensis	RchiOBHm_Chr1g0382431
rosa_laevigata	RLG00000026179
rosa_multiflora	Rmu_co8377425.1_g000001 Rmu_sc0000110.1_g000047 Rmu_sc0003885.1_g000011
rosa_roxburghii	Rroxscaffold_4G00278110
rosa_rugosa	Rorug01G0434200 Rorug01G0434300.1 Rorug01G0434400
rosa_samantha	Rh1AG459000 Rh1BG415300 Rh1CG429400 Rh1DG447400
rosa_wichuraiana	Rw1G041200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	404
AccII	CGCG	1 cut(s)	399
AciI	CCGC	1 cut(s)	106
AclWI	GGATC	2 cut(s)	285, 454
AcsI	RAATTY	1 cut(s)	682
AcyI	GRCGYC	1 cut(s)	405
AgsI	TTSAA	2 cut(s)	326, 334
AhlI	ACTAGT	1 cut(s)	476
AjnI	CCWGG	1 cut(s)	216
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	4 cut(s)	129, 163, 199, 248
AluI	AGCT	4 cut(s)	129, 163, 199, 248
Alw21I	GWGCWC	1 cut(s)	484
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	2 cut(s)	285, 454
Ama87I	CYCGRG	2 cut(s)	164, 483
ApeKI	GCWGC	1 cut(s)	205
ApoI	RAATTY	1 cut(s)	682
AspLEI	GCGC	1 cut(s)	407
AspS9I	GGNCC	1 cut(s)	690
AsuII	TTCGAA	1 cut(s)	147
AvaI	CYCGRG	2 cut(s)	164, 483
AvaII	GGWCC	1 cut(s)	690
BanI	GGYRCC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	484
BbvI	GCAGC	1 cut(s)	192
BccI	CCATC	3 cut(s)	246, 395, 437
BceAI	ACGGC	2 cut(s)	64, 453
BcgI	CGANNNNNNTGC	2 cut(s)	429, 463
BciT130I	CCWGG	1 cut(s)	218
BcoDI	GTCTC	1 cut(s)	293
BcuI	ACTAGT	1 cut(s)	476
BfaI	CTAG	3 cut(s)	249, 477, 494
BfoI	RGCGCY	1 cut(s)	408
BisI	GCNGC	1 cut(s)	206
BlsI	GCNGC	1 cut(s)	207
Bme1390I	CCNGG	1 cut(s)	218
Bme18I	GGWCC	1 cut(s)	690
BmeT110I	CYCGRG	2 cut(s)	164, 483
BmgT120I	GGNCC	1 cut(s)	690
BmiI	GGNNCC	2 cut(s)	406, 520
BmrFI	CCNGG	1 cut(s)	218
BmsI	GCATC	2 cut(s)	323, 592
Bpu14I	TTCGAA	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	603
BsaHI	GRCGYC	1 cut(s)	405
BsaJI	CCNNGG	1 cut(s)	170
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bse1I	ACTGG	1 cut(s)	680
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	170
BseGI	GGATG	1 cut(s)	607
BseMII	CTCAG	2 cut(s)	295, 304
BseNI	ACTGG	1 cut(s)	680
BseRI	GAGGAG	4 cut(s)	22, 32, 353, 531
BseXI	GCAGC	1 cut(s)	192
BsgI	GTGCAG	1 cut(s)	203
Bsh1236I	CGCG	1 cut(s)	399
BshNI	GGYRCC	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	484
BsiHKCI	CYCGRG	2 cut(s)	164, 483
BsmAI	GTCTC	1 cut(s)	293
BsoBI	CYCGRG	2 cut(s)	164, 483
Bsp119I	TTCGAA	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	484
Bsp143I	GATC	5 cut(s)	277, 379, 446, 577, 658
Bsp68I	TCGCGA	1 cut(s)	399
BspACI	CCGC	1 cut(s)	106
BspCNI	CTCAG	2 cut(s)	294, 303
BspFNI	CGCG	1 cut(s)	399
BspLI	GGNNCC	2 cut(s)	406, 520
BspPI	GGATC	2 cut(s)	285, 454
BspQI	GCTCTTC	1 cut(s)	238
BspT104I	TTCGAA	1 cut(s)	147
BspT107I	GGYRCC	1 cut(s)	404
BsrI	ACTGG	1 cut(s)	680
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	5 cut(s)	277, 379, 446, 577, 658
BssNI	GRCGYC	1 cut(s)	405
BssT1I	CCWWGG	1 cut(s)	170
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	63
Bst6I	CTCTTC	2 cut(s)	238, 492
BstACI	GRCGYC	1 cut(s)	405
BstAPI	GCANNNNNTGC	1 cut(s)	352
BstBI	TTCGAA	1 cut(s)	147
BstDEI	CTNAG	3 cut(s)	40, 281, 290
BstF5I	GGATG	1 cut(s)	607
BstFNI	CGCG	1 cut(s)	399
BstH2I	RGCGCY	1 cut(s)	408
BstHHI	GCGC	1 cut(s)	407
BstKTI	GATC	5 cut(s)	280, 382, 449, 580, 661
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	5 cut(s)	277, 379, 446, 577, 658
BstMWI	GCNNNNNNNGC	2 cut(s)	205, 352
BstNI	CCWGG	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	216
BstUI	CGCG	1 cut(s)	399
BstV1I	GCAGC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	277
BstXI	CCANNNNNNTGG	1 cut(s)	548
BstYI	RGATCY	1 cut(s)	277
BtgZI	GCGATG	2 cut(s)	83, 414
BtsCI	GGATG	1 cut(s)	607
BtsIMutI	CAGTG	1 cut(s)	673
BtuMI	TCGCGA	1 cut(s)	399
CfoI	GCGC	1 cut(s)	407
Cfr13I	GGNCC	1 cut(s)	690
CviAII	CATG	1 cut(s)	542
CviJI	RGCY	9 cut(s)	58, 129, 163, 169, 199, 205, 248, 521, 540
CviKI_1	RGCY	9 cut(s)	58, 129, 163, 169, 199, 205, 248, 521, 540
DdeI	CTNAG	3 cut(s)	40, 281, 290
DinI	GGCGCC	1 cut(s)	406
DpnI	GATC	5 cut(s)	279, 381, 448, 579, 660
DpnII	GATC	5 cut(s)	277, 379, 446, 577, 658
Eam1104I	CTCTTC	2 cut(s)	238, 492
EarI	CTCTTC	2 cut(s)	238, 492
Eco130I	CCWWGG	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	690
Eco88I	CYCGRG	2 cut(s)	164, 483
EcoRII	CCWGG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	170
EgeI	GGCGCC	1 cut(s)	406
EheI	GGCGCC	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	170
FaeI	CATG	1 cut(s)	545
FatI	CATG	1 cut(s)	541
Fnu4HI	GCNGC	1 cut(s)	206
FokI	GGATG	1 cut(s)	614
Fsp4HI	GCNGC	1 cut(s)	206
FspBI	CTAG	3 cut(s)	249, 477, 494
GlaI	GCGC	1 cut(s)	406
GluI	GCNGC	1 cut(s)	206
HaeII	RGCGCY	1 cut(s)	408
HhaI	GCGC	1 cut(s)	407
Hin1I	GRCGYC	1 cut(s)	405
Hin1II	CATG	1 cut(s)	545
Hin6I	GCGC	1 cut(s)	405
HinP1I	GCGC	1 cut(s)	405
HinfI	GANTC	6 cut(s)	137, 155, 326, 419, 527, 638
Hpy188I	TCNGA	6 cut(s)	237, 284, 293, 435, 585, 612
Hpy188III	TCNNGA	3 cut(s)	398, 413, 688
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	3 cut(s)	172, 328, 455
HpyCH4III	ACNGT	1 cut(s)	63
HpyCH4V	TGCA	6 cut(s)	184, 208, 224, 361, 367, 628
HpyF10VI	GCNNNNNNNGC	2 cut(s)	205, 352
HpyF3I	CTNAG	3 cut(s)	40, 281, 290
Hsp92I	GRCGYC	1 cut(s)	405
Hsp92II	CATG	1 cut(s)	545
HspAI	GCGC	1 cut(s)	405
KasI	GGCGCC	1 cut(s)	404
Kzo9I	GATC	5 cut(s)	277, 379, 446, 577, 658
LguI	GCTCTTC	1 cut(s)	238
LmnI	GCTCC	2 cut(s)	508, 518
LpnPI	CCDG	7 cut(s)	203, 230, 260, 627, 638, 661, 673
Lsp1109I	GCAGC	1 cut(s)	192
LweI	GCATC	2 cut(s)	323, 592
MaeI	CTAG	3 cut(s)	249, 477, 494
MaeIII	GTNAC	2 cut(s)	372, 452
MalI	GATC	5 cut(s)	279, 381, 448, 579, 660
MboI	GATC	5 cut(s)	277, 379, 446, 577, 658
MboII	GAAGA	9 cut(s)	41, 44, 91, 94, 255, 308, 428, 509, 572
MfeI	CAATTG	1 cut(s)	596
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	1 cut(s)	484
MluCI	AATT	4 cut(s)	466, 596, 667, 682
Mly113I	GGCGCC	1 cut(s)	405
MlyI	GAGTC	2 cut(s)	146, 149
MmeI	TCCRAC	2 cut(s)	114, 615
MnlI	CCTC	9 cut(s)	10, 168, 222, 331, 420, 493, 509, 616, 627
MseI	TTAA	1 cut(s)	680
MspR9I	CCNGG	1 cut(s)	218
MunI	CAATTG	1 cut(s)	596
MvaI	CCWGG	1 cut(s)	218
MvnI	CGCG	1 cut(s)	399
MwoI	GCNNNNNNNGC	2 cut(s)	205, 352
NarI	GGCGCC	1 cut(s)	405
NdeII	GATC	5 cut(s)	277, 379, 446, 577, 658
NlaIII	CATG	1 cut(s)	545
NlaIV	GGNNCC	2 cut(s)	406, 520
NruI	TCGCGA	1 cut(s)	399
NspV	TTCGAA	1 cut(s)	147
PaeR7I	CTCGAG	2 cut(s)	164, 483
PciSI	GCTCTTC	1 cut(s)	238
PfeI	GAWTC	4 cut(s)	326, 419, 527, 638
PkrI	GCNGC	1 cut(s)	207
PleI	GAGTC	2 cut(s)	145, 149
PluTI	GGCGCC	1 cut(s)	408
PpsI	GAGTC	2 cut(s)	145, 149
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	2 cut(s)	406, 520
PspPI	GGNCC	1 cut(s)	690
PspXI	VCTCGAGB	2 cut(s)	164, 483
PsuI	RGATCY	1 cut(s)	277
RruI	TCGCGA	1 cut(s)	399
SapI	GCTCTTC	1 cut(s)	238
SaqAI	TTAA	1 cut(s)	680
SatI	GCNGC	1 cut(s)	206
Sau3AI	GATC	5 cut(s)	277, 379, 446, 577, 658
Sau96I	GGNCC	1 cut(s)	690
SchI	GAGTC	2 cut(s)	146, 149
ScrFI	CCNGG	1 cut(s)	218
SduI	GDGCHC	1 cut(s)	484
SfaNI	GCATC	2 cut(s)	323, 592
SfoI	GGCGCC	1 cut(s)	406
Sfr274I	CTCGAG	2 cut(s)	164, 483
SfuI	TTCGAA	1 cut(s)	147
SinI	GGWCC	1 cut(s)	690
SlaI	CTCGAG	2 cut(s)	164, 483
SmlI	CTYRAG	3 cut(s)	164, 483, 618
SmoI	CTYRAG	3 cut(s)	164, 483, 618
SpeI	ACTAGT	1 cut(s)	476
Sse9I	AATT	4 cut(s)	466, 596, 667, 682
SsiI	CCGC	1 cut(s)	106
SspDI	GGCGCC	1 cut(s)	404
SspMI	CTAG	3 cut(s)	249, 477, 494
StyD4I	CCNGG	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	63
TaqI	TCGA	5 cut(s)	147, 158, 165, 449, 484
TasI	AATT	4 cut(s)	466, 596, 667, 682
TfiI	GAWTC	4 cut(s)	326, 419, 527, 638
Tru1I	TTAA	1 cut(s)	680
Tru9I	TTAA	1 cut(s)	680
TscAI	CASTG	1 cut(s)	680
TseI	GCWGC	1 cut(s)	205
TspDTI	ATGAA	3 cut(s)	42, 86, 582
TspRI	CASTG	1 cut(s)	680
VpaK11BI	GGWCC	1 cut(s)	690
XapI	RAATTY	1 cut(s)	682
XcmI	CCANNNNNNNNNTGG	1 cut(s)	548
XhoI	CTCGAG	2 cut(s)	164, 483
XspI	CTAG	3 cut(s)	249, 477, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.