Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011599

Physical Location & Seq

Genomic Coordinates Reverse (-)

67318789 .. 67320232

Gene Structure 1444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60541

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGCAGAGATCATTACGTGGCTTACGTTTGCTAACACCATTGGTTAAGACACTCCATCAATCAATAGTTCCAATTACAAGAAAGCAACCGCGTTACTTTGTTTCAATTCCTAACTATATATTCTACAAGCTAACATCATTGCCAAGATTCCAAAGCACATTCACCTTAATAATGGAGAGGGAAGTAGAAAGCCTAGAGACCCATTCTACTGCGAAAAGGAAGAAGAATAACAAGAGCCTGAATAGTAGGAGGTTTAGTGATGAGCAGATCAAGTTGTTGGAGTCGATATTCGAAGCAGATTCGAAGCTTGAGCCAAGGAGGAAAGTGCAGGTGGCAAGAGAGCTGGGGCTGCAGCCGCGCCAGGTTGCTATATGGTTTCAGAACAGAAGAGCTAGATGGAAGTCGAAGCAAATCGAGCAAGACTTTAGAACACTCAGAAATGAGTATGACTTGTTAGCATCTAAGTTTGAGTCTTTGAAGGAGGAAAAGCAATCCTTGCTTATACAGTTGGAGAAGCTAAATGATCTCATGGGAAAATCAAAAGTTCATGAAGAGAGCATGGATGGTAAAGATTTGGAAGGCTCAAGTAACAAAGACGGAGATTGTGAGACTACAGAAGAAAAGCCAAGTCACTTACAGTCCCACAAGAATTTTGCAAGTGATGATGTTGGGAATGAAGGTCATGAGCAGCTTATGAACATGTGTCAAGTAGGAGCTATAGTGTCACCTGAAGATTGGCACAGATTTGATTCAGGCGGTCTGTTTGATCCGCCGCGTAGCAGCAGTGCTACTTCACAATGGTTAAATTTCTGGATTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

273

Amino Acids

31.86

Weight (kDa)

9.1

Isoelectric Point (pI)

59.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	84 - 134	7e-17	Homeodomain
HALZ	PF02183	136 - 177	1.3e-12	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011599)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32570
malus_domestica	MD01G1226600.v1.1 MD07G1297100.v1.1
prunus_persica	Prupe.2G316600_v2.0.a1
pyrus_communis	pycom01g23510 pycom07g26970
rosa_chinensis	RchiOBHm_Chr1g0382431
rosa_laevigata	RLG00000026179
rosa_multiflora	Rmu_co8377425.1_g000001 Rmu_sc0000110.1_g000047 Rmu_sc0003885.1_g000011
rosa_roxburghii	Rroxscaffold_4G00278110
rosa_rugosa	Rorug01G0434200 Rorug01G0434300.1 Rorug01G0434400
rosa_samantha	Rh1AG459000 Rh1BG415300 Rh1CG429400 Rh1DG447400
rosa_wichuraiana	Rw1G041200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	319
Acc36I	ACCTGC	1 cut(s)	319
AccII	CGCG	3 cut(s)	91, 358, 775
AciI	CCGC	5 cut(s)	89, 356, 756, 770, 773
AclWI	GGATC	1 cut(s)	761
AcsI	RAATTY	2 cut(s)	649, 805
AcuI	CTGAAG	1 cut(s)	750
AflIII	ACRYGT	1 cut(s)	699
AgsI	TTSAA	2 cut(s)	105, 478
AjnI	CCWGG	1 cut(s)	360
AluBI	AGCT	7 cut(s)	130, 307, 343, 392, 517, 691, 716
AluI	AGCT	7 cut(s)	130, 307, 343, 392, 517, 691, 716
Alw26I	GTCTC	2 cut(s)	191, 602
AlwI	GGATC	1 cut(s)	761
ApeKI	GCWGC	4 cut(s)	349, 352, 688, 780
ApoI	RAATTY	2 cut(s)	649, 805
AspLEI	GCGC	1 cut(s)	360
AsuHPI	GGTGA	2 cut(s)	154, 717
AsuII	TTCGAA	2 cut(s)	291, 302
BbvI	GCAGC	4 cut(s)	336, 364, 700, 792
BccI	CCATC	3 cut(s)	63, 390, 557
BciT130I	CCWGG	1 cut(s)	362
BcoDI	GTCTC	2 cut(s)	191, 602
BfaI	CTAG	2 cut(s)	194, 393
BfmI	CTRYAG	3 cut(s)	350, 612, 717
BfuAI	ACCTGC	1 cut(s)	319
BisI	GCNGC	6 cut(s)	350, 353, 356, 689, 773, 781
BlsI	GCNGC	6 cut(s)	351, 354, 357, 690, 774, 782
Bme1390I	CCNGG	1 cut(s)	362
BmrFI	CCNGG	1 cut(s)	362
BmsI	GCATC	1 cut(s)	467
Bpu14I	TTCGAA	2 cut(s)	291, 302
BpuEI	CTTGAG	2 cut(s)	329, 568
BsaAI	YACGTR	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	314
BsaXI	ACNNNNNCTCC	4 cut(s)	241, 271, 705, 735
Bse3DI	GCAATG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	362
BseDI	CCNNGG	1 cut(s)	314
BseGI	GGATG	1 cut(s)	568
BseMI	GCAATG	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	448
BseXI	GCAGC	4 cut(s)	336, 364, 700, 792
BseYI	CCCAGC	1 cut(s)	343
BsgI	GTGCAG	1 cut(s)	347
Bsh1236I	CGCG	3 cut(s)	91, 358, 775
BslFI	GGGAC	1 cut(s)	625
BsmAI	GTCTC	2 cut(s)	191, 602
BsmFI	GGGAC	1 cut(s)	625
Bso31I	GGTCTC	1 cut(s)	191
Bsp119I	TTCGAA	2 cut(s)	291, 302
Bsp143I	GATC	4 cut(s)	8, 267, 523, 766
BspACI	CCGC	5 cut(s)	89, 356, 756, 770, 773
BspCNI	CTCAG	1 cut(s)	447
BspFNI	CGCG	3 cut(s)	91, 358, 775
BspHI	TCATGA	2 cut(s)	547, 682
BspMAI	CTGCAG	1 cut(s)	354
BspMI	ACCTGC	1 cut(s)	319
BspPI	GGATC	1 cut(s)	761
BspQI	GCTCTTC	1 cut(s)	382
BspT104I	TTCGAA	2 cut(s)	291, 302
BspTNI	GGTCTC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	314
BssMI	GATC	4 cut(s)	8, 267, 523, 766
BssT1I	CCWWGG	1 cut(s)	314
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	2 cut(s)	507, 639
Bst6I	CTCTTC	2 cut(s)	382, 546
BstAPI	GCANNNNNTGC	1 cut(s)	496
BstBAI	YACGTR	1 cut(s)	17
BstBI	TTCGAA	2 cut(s)	291, 302
BstDEI	CTNAG	2 cut(s)	434, 462
BstF5I	GGATG	1 cut(s)	568
BstFNI	CGCG	3 cut(s)	91, 358, 775
BstHHI	GCGC	1 cut(s)	360
BstKTI	GATC	4 cut(s)	11, 270, 526, 769
BstMAI	GTCTC	2 cut(s)	191, 602
BstMBI	GATC	4 cut(s)	8, 267, 523, 766
BstMWI	GCNNNNNNNGC	4 cut(s)	349, 355, 415, 496
BstNI	CCWGG	1 cut(s)	362
BstNSI	RCATGY	1 cut(s)	703
BstSCI	CCNGG	1 cut(s)	360
BstSFI	CTRYAG	3 cut(s)	350, 612, 717
BstUI	CGCG	3 cut(s)	91, 358, 775
BstV1I	GCAGC	4 cut(s)	336, 364, 700, 792
BtsCI	GGATG	1 cut(s)	568
BtsI	GCAGTG	1 cut(s)	790
BtsIMutI	CAGTG	1 cut(s)	790
BveI	ACCTGC	1 cut(s)	319
CciI	TCATGA	2 cut(s)	547, 682
CfoI	GCGC	1 cut(s)	360
CviAII	CATG	5 cut(s)	529, 548, 559, 683, 700
DdeI	CTNAG	2 cut(s)	434, 462
DpnI	GATC	4 cut(s)	10, 269, 525, 768
DpnII	GATC	4 cut(s)	8, 267, 523, 766
Eam1104I	CTCTTC	2 cut(s)	382, 546
EarI	CTCTTC	2 cut(s)	382, 546
EciI	GGCGGA	1 cut(s)	759
Eco130I	CCWWGG	1 cut(s)	314
Eco31I	GGTCTC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	750
EcoRII	CCWGG	1 cut(s)	360
EcoT14I	CCWWGG	1 cut(s)	314
ErhI	CCWWGG	1 cut(s)	314
FaeI	CATG	5 cut(s)	532, 551, 562, 686, 703
FalI	AAGNNNNNCTT	2 cut(s)	479, 511
FaqI	GGGAC	1 cut(s)	625
FatI	CATG	5 cut(s)	528, 547, 558, 682, 699
Fnu4HI	GCNGC	6 cut(s)	350, 353, 356, 689, 773, 781
FokI	GGATG	1 cut(s)	575
Fsp4HI	GCNGC	6 cut(s)	350, 353, 356, 689, 773, 781
FspBI	CTAG	2 cut(s)	194, 393
GlaI	GCGC	1 cut(s)	359
GluI	GCNGC	6 cut(s)	350, 353, 356, 689, 773, 781
GsaI	CCCAGC	1 cut(s)	347
HhaI	GCGC	1 cut(s)	360
Hin1II	CATG	5 cut(s)	532, 551, 562, 686, 703
Hin6I	GCGC	1 cut(s)	358
HinP1I	GCGC	1 cut(s)	358
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	5 cut(s)	147, 281, 299, 470, 749
HphI	GGTGA	2 cut(s)	154, 717
Hpy188I	TCNGA	2 cut(s)	381, 437
Hpy188III	TCNNGA	3 cut(s)	548, 683, 811
HpyAV	CCTTC	3 cut(s)	472, 572, 671
HpyCH4III	ACNGT	2 cut(s)	507, 639
HpyCH4IV	ACGT	2 cut(s)	16, 25
HpyCH4V	TGCA	4 cut(s)	4, 328, 352, 656
HpyF10VI	GCNNNNNNNGC	4 cut(s)	349, 355, 415, 496
HpyF3I	CTNAG	2 cut(s)	434, 462
HpySE526I	ACGT	2 cut(s)	16, 25
Hsp92II	CATG	5 cut(s)	532, 551, 562, 686, 703
HspAI	GCGC	1 cut(s)	358
Kzo9I	GATC	4 cut(s)	8, 267, 523, 766
LguI	GCTCTTC	1 cut(s)	382
LmnI	GCTCC	1 cut(s)	713
LpnPI	CCDG	8 cut(s)	251, 314, 329, 347, 374, 738, 741, 796
Lsp1109I	GCAGC	4 cut(s)	336, 364, 700, 792
LweI	GCATC	1 cut(s)	467
MaeI	CTAG	2 cut(s)	194, 393
MaeII	ACGT	2 cut(s)	16, 25
MaeIII	GTNAC	4 cut(s)	92, 587, 629, 723
MalI	GATC	4 cut(s)	10, 269, 525, 768
MboI	GATC	4 cut(s)	8, 267, 523, 766
MboII	GAAGA	6 cut(s)	232, 235, 399, 563, 629, 743
MluCI	AATT	4 cut(s)	72, 105, 649, 805
MlyI	GAGTC	2 cut(s)	290, 479
MmeI	TCCRAC	2 cut(s)	258, 489
MnlI	CCTC	4 cut(s)	171, 243, 312, 475
MseI	TTAA	4 cut(s)	45, 167, 803, 816
MspR9I	CCNGG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	362
MvnI	CGCG	3 cut(s)	91, 358, 775
MwoI	GCNNNNNNNGC	4 cut(s)	349, 355, 415, 496
NdeII	GATC	4 cut(s)	8, 267, 523, 766
NlaIII	CATG	5 cut(s)	532, 551, 562, 686, 703
NmuCI	GTSAC	2 cut(s)	629, 723
NspI	RCATGY	1 cut(s)	703
NspV	TTCGAA	2 cut(s)	291, 302
PagI	TCATGA	2 cut(s)	547, 682
PaqCI	CACCTGC	1 cut(s)	319
PciI	ACATGT	1 cut(s)	699
PciSI	GCTCTTC	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	1 cut(s)	22
PfeI	GAWTC	3 cut(s)	147, 299, 749
PkrI	GCNGC	6 cut(s)	351, 354, 357, 690, 774, 782
PleI	GAGTC	2 cut(s)	289, 478
PpsI	GAGTC	2 cut(s)	289, 478
Ppu21I	YACGTR	1 cut(s)	17
PscI	ACATGT	1 cut(s)	699
Psp6I	CCWGG	1 cut(s)	360
PspFI	CCCAGC	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	360
PstI	CTGCAG	1 cut(s)	354
SapI	GCTCTTC	1 cut(s)	382
SaqAI	TTAA	4 cut(s)	45, 167, 803, 816
SatI	GCNGC	6 cut(s)	350, 353, 356, 689, 773, 781
Sau3AI	GATC	4 cut(s)	8, 267, 523, 766
SchI	GAGTC	2 cut(s)	290, 479
ScrFI	CCNGG	1 cut(s)	362
SfaNI	GCATC	1 cut(s)	467
SfcI	CTRYAG	3 cut(s)	350, 612, 717
SfuI	TTCGAA	2 cut(s)	291, 302
SmlI	CTYRAG	2 cut(s)	308, 583
SmoI	CTYRAG	2 cut(s)	308, 583
Sse9I	AATT	4 cut(s)	72, 105, 649, 805
SsiI	CCGC	5 cut(s)	89, 356, 756, 770, 773
SspMI	CTAG	2 cut(s)	194, 393
StyD4I	CCNGG	1 cut(s)	360
StyI	CCWWGG	1 cut(s)	314
TaaI	ACNGT	2 cut(s)	507, 639
TaiI	ACGT	2 cut(s)	19, 28
TaqI	TCGA	5 cut(s)	284, 291, 302, 404, 414
TasI	AATT	4 cut(s)	72, 105, 649, 805
TauI	GCSGC	2 cut(s)	358, 775
TfiI	GAWTC	3 cut(s)	147, 299, 749
Tru1I	TTAA	4 cut(s)	45, 167, 803, 816
Tru9I	TTAA	4 cut(s)	45, 167, 803, 816
TscAI	CASTG	1 cut(s)	790
TseFI	GTSAC	2 cut(s)	629, 723
TseI	GCWGC	4 cut(s)	349, 352, 688, 780
Tsp45I	GTSAC	2 cut(s)	629, 723
TspDTI	ATGAA	4 cut(s)	536, 564, 690, 710
TspGWI	ACGGA	1 cut(s)	612
TspRI	CASTG	1 cut(s)	790
XapI	RAATTY	2 cut(s)	649, 805
XceI	RCATGY	1 cut(s)	703
XspI	CTAG	2 cut(s)	194, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.