Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0011599

Physical Location & Seq

Genomic Coordinates Reverse (-)

31679643 .. 31681132

Gene Structure 1490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1226600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGAAAGGAGGAAAGAGGAGTGCTATGAAGAAGAAAACTTGGATTATGTGAGCGGCCCAGAGCCGCAGTTCGCGACGAAAAGGAAGAAGAACAAGGGCACAAACACGAGGCGATTTAGCGACGAACAAATCAGTTTGTTGGAGTCTATATTCGAAGCAGACTCGAAGCTCGAGCCGAGGAGGAAGGTGCAATTGGCAAGAGAGCTTGGGCTGCAGCCTCGCCAGGTTGCCATATGGTTTCAGAACAGAAGAGCTAGATGGAAGTCGAAACAGATGGAGCGGGACTTGAGAAGTCTCAGAGAAGATTATGACAAGTTAGCATGTCGGTTTGAATCTTTGAAGGAGGAGAAGCAGTCCTTGCTTATGCAGTTGCAGAAGTTGAATGATCTTGTGGGAACATCTCGAGATGGCGCCCCTACCGAAGATTCTCTCATGAATCAGACGGCGGATGGATCGAGTTACAAAGATGGGAATTGTGAGACGACTGCTCAAGTAAGACTAGAAGAGGAATTGGAGCGGAGAGGAGTCATAGATTCACATACAAGCAATGATGTTGGTGGGGAGTATGGAGATGAAAGACATGATGAGCTTCTGAAGATAGGTCAATTGGATGCCTCTGCGACACCTCAAGAATTGCATAGGCTGGATTCAGGCAGCATTTTGTTTGATCCATCACGTTGTAATTTACACTGGTTAAATTTCTGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

237

Amino Acids

27.47

Weight (kDa)

5.36

Isoelectric Point (pI)

59.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	37 - 88	8.7e-18	Homeodomain
HALZ	PF02183	90 - 130	1.7e-11	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011599)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32570
malus_domestica	MD01G1226600.v1.1 MD07G1297100.v1.1
prunus_persica	Prupe.2G316600_v2.0.a1
pyrus_communis	pycom01g23510 pycom07g26970
rosa_chinensis	RchiOBHm_Chr1g0382431
rosa_laevigata	RLG00000026179
rosa_multiflora	Rmu_co8377425.1_g000001 Rmu_sc0000110.1_g000047 Rmu_sc0003885.1_g000011
rosa_roxburghii	Rroxscaffold_4G00278110
rosa_rugosa	Rorug01G0434200 Rorug01G0434300.1 Rorug01G0434400
rosa_samantha	Rh1AG459000 Rh1BG415300 Rh1CG429400 Rh1DG447400
rosa_wichuraiana	Rw1G041200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	410
AccBSI	CCGCTC	3 cut(s)	54, 280, 517
AccII	CGCG	1 cut(s)	74
AciI	CCGC	5 cut(s)	54, 65, 280, 446, 517
AclWI	GGATC	2 cut(s)	460, 662
AcsI	RAATTY	1 cut(s)	697
AcuI	CTGAAG	1 cut(s)	614
AcyI	GRCGYC	1 cut(s)	411
AgsI	TTSAA	3 cut(s)	332, 340, 382
AjnI	CCWGG	1 cut(s)	222
AjuI	GAANNNNNNNTTGG	2 cut(s)	176, 208
AluBI	AGCT	4 cut(s)	169, 205, 254, 589
AluI	AGCT	4 cut(s)	169, 205, 254, 589
Alw26I	GTCTC	2 cut(s)	299, 473
AlwI	GGATC	2 cut(s)	460, 662
Ama87I	CYCGRG	2 cut(s)	170, 402
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	3 cut(s)	211, 214, 654
ApoI	RAATTY	1 cut(s)	697
AspLEI	GCGC	1 cut(s)	413
AspS9I	GGNCC	1 cut(s)	56
AsuII	TTCGAA	1 cut(s)	153
AvaI	CYCGRG	2 cut(s)	170, 402
BaeGI	GKGCMC	1 cut(s)	101
BanI	GGYRCC	1 cut(s)	410
BauI	CACGAG	1 cut(s)	106
BbvI	GCAGC	3 cut(s)	198, 226, 666
BccI	CCATC	6 cut(s)	252, 268, 401, 443, 461, 679
BceAI	ACGGC	1 cut(s)	459
BciT130I	CCWGG	1 cut(s)	224
BcoDI	GTCTC	2 cut(s)	299, 473
BfaI	CTAG	2 cut(s)	255, 500
BfmI	CTRYAG	1 cut(s)	212
BfoI	RGCGCY	1 cut(s)	414
BisI	GCNGC	5 cut(s)	55, 65, 212, 215, 655
BlsI	GCNGC	5 cut(s)	56, 66, 213, 216, 656
Bme1390I	CCNGG	1 cut(s)	224
BmeT110I	CYCGRG	2 cut(s)	170, 402
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	412
BmrFI	CCNGG	1 cut(s)	224
BmsI	GCATC	1 cut(s)	601
Bpu14I	TTCGAA	1 cut(s)	153
BpuEI	CTTGAG	3 cut(s)	307, 474, 612
BsaHI	GRCGYC	1 cut(s)	411
BsaJI	CCNNGG	1 cut(s)	176
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bse1I	ACTGG	1 cut(s)	695
Bse3DI	GCAATG	1 cut(s)	553
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	1 cut(s)	176
BseGI	GGATG	2 cut(s)	454, 616
BseMI	GCAATG	1 cut(s)	553
BseMII	CTCAG	1 cut(s)	310
BseNI	ACTGG	1 cut(s)	695
BseRI	GAGGAG	4 cut(s)	32, 193, 359, 537
BseSI	GKGCMC	1 cut(s)	101
BseXI	GCAGC	3 cut(s)	198, 226, 666
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	57
BshNI	GGYRCC	1 cut(s)	410
BsiHKCI	CYCGRG	2 cut(s)	170, 402
BslFI	GGGAC	1 cut(s)	296
BsmAI	GTCTC	2 cut(s)	299, 473
BsmBI	CGTCTC	1 cut(s)	473
BsmFI	GGGAC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	57
BsoBI	CYCGRG	2 cut(s)	170, 402
Bsp119I	TTCGAA	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp143I	GATC	3 cut(s)	385, 452, 667
Bsp68I	TCGCGA	1 cut(s)	74
BspACI	CCGC	5 cut(s)	54, 65, 280, 446, 517
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	1 cut(s)	309
BspFNI	CGCG	1 cut(s)	74
BspHI	TCATGA	1 cut(s)	432
BspLI	GGNNCC	1 cut(s)	412
BspMAI	CTGCAG	1 cut(s)	216
BspPI	GGATC	2 cut(s)	460, 662
BspQI	GCTCTTC	1 cut(s)	244
BspT104I	TTCGAA	1 cut(s)	153
BspT107I	GGYRCC	1 cut(s)	410
BsrBI	CCGCTC	3 cut(s)	54, 280, 517
BsrDI	GCAATG	1 cut(s)	553
BsrI	ACTGG	1 cut(s)	695
BssECI	CCNNGG	1 cut(s)	176
BssMI	GATC	3 cut(s)	385, 452, 667
BssNI	GRCGYC	1 cut(s)	411
BssSI	CACGAG	1 cut(s)	106
Bst2BI	CACGAG	1 cut(s)	106
Bst2UI	CCWGG	1 cut(s)	224
Bst6I	CTCTTC	2 cut(s)	244, 498
BstACI	GRCGYC	1 cut(s)	411
BstAPI	GCANNNNNTGC	1 cut(s)	358
BstBI	TTCGAA	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	296
BstF5I	GGATG	2 cut(s)	454, 616
BstFNI	CGCG	1 cut(s)	74
BstH2I	RGCGCY	1 cut(s)	414
BstHHI	GCGC	1 cut(s)	413
BstKTI	GATC	3 cut(s)	388, 455, 670
BstMAI	GTCTC	2 cut(s)	299, 473
BstMBI	GATC	3 cut(s)	385, 452, 667
BstMWI	GCNNNNNNNGC	2 cut(s)	211, 358
BstNI	CCWGG	1 cut(s)	224
BstNSI	RCATGY	1 cut(s)	324
BstSCI	CCNGG	1 cut(s)	222
BstSFI	CTRYAG	1 cut(s)	212
BstSLI	GKGCMC	1 cut(s)	101
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	3 cut(s)	198, 226, 666
BsuRI	GGCC	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	454, 616
BtsIMutI	CAGTG	1 cut(s)	688
BtuMI	TCGCGA	1 cut(s)	74
CciI	TCATGA	1 cut(s)	432
CfoI	GCGC	1 cut(s)	413
Cfr13I	GGNCC	1 cut(s)	56
CviAII	CATG	3 cut(s)	321, 433, 581
DdeI	CTNAG	1 cut(s)	296
DinI	GGCGCC	1 cut(s)	412
DpnI	GATC	3 cut(s)	387, 454, 669
DpnII	GATC	3 cut(s)	385, 452, 667
Eam1104I	CTCTTC	2 cut(s)	244, 498
EarI	CTCTTC	2 cut(s)	244, 498
EciI	GGCGGA	1 cut(s)	461
Eco57I	CTGAAG	1 cut(s)	614
Eco88I	CYCGRG	2 cut(s)	170, 402
EcoRII	CCWGG	1 cut(s)	222
EgeI	GGCGCC	1 cut(s)	412
EheI	GGCGCC	1 cut(s)	412
Esp3I	CGTCTC	1 cut(s)	473
FaeI	CATG	3 cut(s)	324, 436, 584
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	3 cut(s)	320, 432, 580
FauI	CCCGC	1 cut(s)	273
FauNDI	CATATG	1 cut(s)	233
Fnu4HI	GCNGC	5 cut(s)	55, 65, 212, 215, 655
FokI	GGATG	2 cut(s)	461, 623
Fsp4HI	GCNGC	5 cut(s)	55, 65, 212, 215, 655
FspBI	CTAG	2 cut(s)	255, 500
GlaI	GCGC	1 cut(s)	412
GluI	GCNGC	5 cut(s)	55, 65, 212, 215, 655
HaeII	RGCGCY	1 cut(s)	414
HaeIII	GGCC	1 cut(s)	57
HhaI	GCGC	1 cut(s)	413
Hin1I	GRCGYC	1 cut(s)	411
Hin1II	CATG	3 cut(s)	324, 436, 584
Hin6I	GCGC	1 cut(s)	411
HinP1I	GCGC	1 cut(s)	411
HinfI	GANTC	8 cut(s)	143, 161, 332, 425, 436, 525, 533, 647
Hpy188I	TCNGA	4 cut(s)	243, 299, 441, 594
Hpy188III	TCNNGA	5 cut(s)	73, 402, 404, 433, 629
Hpy99I	CGWCG	2 cut(s)	79, 125
HpyAV	CCTTC	2 cut(s)	178, 334
HpyCH4IV	ACGT	1 cut(s)	676
HpyCH4V	TGCA	5 cut(s)	190, 214, 367, 373, 637
HpyF10VI	GCNNNNNNNGC	2 cut(s)	211, 358
HpyF3I	CTNAG	1 cut(s)	296
HpySE526I	ACGT	1 cut(s)	676
Hsp92I	GRCGYC	1 cut(s)	411
Hsp92II	CATG	3 cut(s)	324, 436, 584
HspAI	GCGC	1 cut(s)	411
KasI	GGCGCC	1 cut(s)	410
Kzo9I	GATC	3 cut(s)	385, 452, 667
LguI	GCTCTTC	1 cut(s)	244
LmnI	GCTCC	2 cut(s)	277, 514
LpnPI	CCDG	7 cut(s)	72, 209, 236, 629, 636, 676, 688
Lsp1109I	GCAGC	3 cut(s)	198, 226, 666
LweI	GCATC	1 cut(s)	601
MaeI	CTAG	2 cut(s)	255, 500
MaeII	ACGT	1 cut(s)	676
MaeIII	GTNAC	1 cut(s)	458
MalI	GATC	3 cut(s)	387, 454, 669
MbiI	CCGCTC	3 cut(s)	54, 280, 517
MboI	GATC	3 cut(s)	385, 452, 667
MboII	GAAGA	9 cut(s)	41, 44, 97, 100, 261, 314, 434, 515, 607
MfeI	CAATTG	2 cut(s)	191, 605
MhlI	GDGCHC	1 cut(s)	101
MluCI	AATT	7 cut(s)	191, 472, 509, 605, 632, 682, 697
Mly113I	GGCGCC	1 cut(s)	411
MlyI	GAGTC	3 cut(s)	152, 155, 534
MmeI	TCCRAC	1 cut(s)	120
MseI	TTAA	1 cut(s)	695
MspR9I	CCNGG	1 cut(s)	224
MunI	CAATTG	2 cut(s)	191, 605
MvaI	CCWGG	1 cut(s)	224
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	2 cut(s)	211, 358
NarI	GGCGCC	1 cut(s)	411
NdeI	CATATG	1 cut(s)	233
NdeII	GATC	3 cut(s)	385, 452, 667
NlaIII	CATG	3 cut(s)	324, 436, 584
NlaIV	GGNNCC	1 cut(s)	412
NmeAIII	GCCGAG	1 cut(s)	201
NruI	TCGCGA	1 cut(s)	74
NspI	RCATGY	1 cut(s)	324
NspV	TTCGAA	1 cut(s)	153
PaeR7I	CTCGAG	2 cut(s)	170, 402
PagI	TCATGA	1 cut(s)	432
PciSI	GCTCTTC	1 cut(s)	244
PfeI	GAWTC	5 cut(s)	332, 425, 436, 533, 647
PkrI	GCNGC	5 cut(s)	56, 66, 213, 216, 656
PleI	GAGTC	3 cut(s)	151, 155, 533
PluTI	GGCGCC	1 cut(s)	414
PpsI	GAGTC	3 cut(s)	151, 155, 533
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	412
PspPI	GGNCC	1 cut(s)	56
PspXI	VCTCGAGB	1 cut(s)	170
PstI	CTGCAG	1 cut(s)	216
RruI	TCGCGA	1 cut(s)	74
SapI	GCTCTTC	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	695
SatI	GCNGC	5 cut(s)	55, 65, 212, 215, 655
Sau3AI	GATC	3 cut(s)	385, 452, 667
Sau96I	GGNCC	1 cut(s)	56
SchI	GAGTC	3 cut(s)	152, 155, 534
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	101
SetI	ASST	9 cut(s)	171, 189, 207, 228, 256, 591, 604, 628, 679
SfaNI	GCATC	1 cut(s)	601
SfcI	CTRYAG	1 cut(s)	212
SfoI	GGCGCC	1 cut(s)	412
Sfr274I	CTCGAG	2 cut(s)	170, 402
SfuI	TTCGAA	1 cut(s)	153
SlaI	CTCGAG	2 cut(s)	170, 402
SmlI	CTYRAG	5 cut(s)	170, 286, 402, 489, 627
SmoI	CTYRAG	5 cut(s)	170, 286, 402, 489, 627
Sse9I	AATT	7 cut(s)	191, 472, 509, 605, 632, 682, 697
SsiI	CCGC	5 cut(s)	54, 65, 280, 446, 517
SspDI	GGCGCC	1 cut(s)	410
SspMI	CTAG	2 cut(s)	255, 500
StyD4I	CCNGG	1 cut(s)	222
TaiI	ACGT	1 cut(s)	679
TaqI	TCGA	6 cut(s)	153, 164, 171, 266, 403, 455
TasI	AATT	7 cut(s)	191, 472, 509, 605, 632, 682, 697
TauI	GCSGC	2 cut(s)	57, 67
TfiI	GAWTC	5 cut(s)	332, 425, 436, 533, 647
Tru1I	TTAA	1 cut(s)	695
Tru9I	TTAA	1 cut(s)	695
TscAI	CASTG	1 cut(s)	695
TseI	GCWGC	3 cut(s)	211, 214, 654
TspDTI	ATGAA	3 cut(s)	42, 449, 588
TspRI	CASTG	1 cut(s)	695
XapI	RAATTY	1 cut(s)	697
XceI	RCATGY	1 cut(s)	324
XhoI	CTCGAG	2 cut(s)	170, 402
XspI	CTAG	2 cut(s)	255, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.