FvH4_7g32590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016927
Physical Location & Seq
Forward (+)
23405028 .. 23406017
990 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g32590.t1

Sequence Viewer

Length: 990 bp
ATGGTAAAGTATCCATACCCTATTGAGTCCGCCTTCGACCTTATCACCTTACTCTTCATTGTTACCCTCCTCCTCCTCTCCATCCTCTCCCTCTGCTACATCTTCCACCTCTGCTTCAAGTCCCGGACGGCCTACCACCTCCAGCACTTCAACTCTCTCTGGACCGTCCGACTCCTCCTCGTCATCTTCGTCATCTTCTGGTCTTTCAATGAGCTCCTCCGCCTCCCCTCCTTCCGCCGCTTCTATCTCTATGGCCCCTATCCCTTCCTCTCAAGCTTCTTCAAAGTCGATGGGTACGAAGAAGAAGACCAGTTTTGCAAGGTACATGTGGTGGTCTCGCTAGGGTTCTTCCAGCCAGCTTTCTTGGGGACTTTGCTCTTCCTTGTTGATGTTTCCATCAAGAAGAAGACACCGAATGTGTCGTGGGCGATCATCTTCGTGCTGTCAACATGTGTTCCGTTGCTAATTGTGCAGACATTCTTCTTGTTCACTCCATTAGACAAGATGTTTTTACCGCTGCCGAGTGTTTTCACCCGGAGCTCTTTGGTAAAAGACGACGCGTTTGGTAAAAAGGTGGCGTTCTGCAAGTACCCTTTGTTGAGCACCGTGATATTTGGTGTCTTTGCGGTTACGTATTTCATGTGGTTCTTGTTCTCGTTATGGAAGGTGTTGTCTTTGGTGATCAACAAGGGACTGAGGATGAGGATTTACACGCTTGCGGTGACGGTGTTGGTGCCATTGCCGATGCAGGTGATTCTTCTAGGTGTTTCCGTCCTGTGGAACCCGGACAAGCCGGCATTCGGGGCGATTTCATTCGTGGTGTTTTTGAGCACTTTTGTTTCCTTCGCCATGGGGCAGGGCATTTTGGTCATTAAACCCATTGCCGACTCCTTGGCAACCGGAGGAGCGAGTTGCAGGTGGAACCCTCACGGGGAGGAGGTGGACGGGAAAAAGAGTGAAGGGAAAGATGAAAAAGAAAGCGTCGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

330

Amino Acids

37.47

Weight (kDa)

9.12

Isoelectric Point (pI)

31.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016927)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g32590
malus_domestica MD01G1227000.v1.1 MD07G1297300.v1.1
prunus_persica Prupe.2G316900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0382461
rosa_laevigata RLG00000026178
rosa_multiflora Rmu_sc0000110.1_g000049 Rmu_sc0000110.1_g000050 Rmu_sc0003885.1_g000010
rosa_roxburghii Rroxscaffold_4G00278090
rosa_rugosa Rorug01G0434500
rosa_samantha Rh1CG429600 Rh1DG447700
rosa_wichuraiana Rw1G041190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 739, 906
Acc36I ACCTGC 2 cut(s) 739, 906
AccB1I GGYRCC 1 cut(s) 733
AccII CGCG 1 cut(s) 560
AciI CCGC 7 cut(s) 30, 220, 235, 238, 515, 626, 719
AfaI GTAC 3 cut(s) 296, 324, 590
AfiI CCNNNNNNNGG 3 cut(s) 777, 800, 931
AflIII ACRYGT 3 cut(s) 325, 449, 558
AgsI TTSAA 4 cut(s) 118, 151, 208, 283
AluBI AGCT 4 cut(s) 214, 276, 359, 540
AluI AGCT 4 cut(s) 214, 276, 359, 540
Alw21I GWGCWC 4 cut(s) 216, 542, 605, 833
Alw26I GTCTC 1 cut(s) 340
AoxI GGCC 2 cut(s) 129, 253
ApeKI GCWGC 1 cut(s) 517
ArsI GACNNNNNNTTYG 2 cut(s) 545, 577
AspS9I GGNCC 2 cut(s) 162, 254
AsuC2I CCSGG 3 cut(s) 124, 535, 785
AsuHPI GGTGA 5 cut(s) 37, 523, 691, 733, 763
AvaII GGWCC 1 cut(s) 162
BanI GGYRCC 1 cut(s) 733
BanII GRGCYC 2 cut(s) 216, 542
BbsI GAAGAC 2 cut(s) 312, 413
Bbv12I GWGCWC 4 cut(s) 216, 542, 605, 833
BbvI GCAGC 1 cut(s) 504
BccI CCATC 3 cut(s) 89, 284, 404
BceAI ACGGC 1 cut(s) 144
BciVI GTATCC 1 cut(s) 21
BclI TGATCA 1 cut(s) 681
BcnI CCSGG 3 cut(s) 124, 535, 785
BcoDI GTCTC 1 cut(s) 340
BfaI CTAG 2 cut(s) 341, 761
BfuAI ACCTGC 2 cut(s) 739, 906
BfuI GTATCC 1 cut(s) 21
BisI GCNGC 2 cut(s) 238, 518
BlsI GCNGC 2 cut(s) 239, 519
Bme1390I CCNGG 3 cut(s) 124, 535, 785
Bme18I GGWCC 1 cut(s) 162
BmgT120I GGNCC 2 cut(s) 162, 254
BmiI GGNNCC 4 cut(s) 256, 735, 782, 923
BmrFI CCNGG 3 cut(s) 124, 535, 785
BmsI GCATC 1 cut(s) 735
BpiI GAAGAC 2 cut(s) 312, 413
BpmI CTGGAG 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 256
BpuMI CCSGG 3 cut(s) 124, 535, 785
BsaAI YACGTR 1 cut(s) 633
BsaI GGTCTC 1 cut(s) 340
BsaJI CCNNGG 2 cut(s) 849, 891
BsaWI WCCGGW 1 cut(s) 899
Bsc4I CCNNNNNNNGG 3 cut(s) 777, 800, 931
Bse118I RCCGGY 1 cut(s) 793
Bse1I ACTGG 1 cut(s) 310
Bse3DI GCAATG 2 cut(s) 737, 879
BseDI CCNNGG 2 cut(s) 849, 891
BseGI GGATG 2 cut(s) 81, 705
BseLI CCNNNNNNNGG 3 cut(s) 777, 800, 931
BseMI GCAATG 2 cut(s) 737, 879
BseMII CTCAG 1 cut(s) 686
BseNI ACTGG 1 cut(s) 310
BseRI GAGGAG 8 cut(s) 59, 62, 65, 164, 167, 206, 918, 950
BseXI GCAGC 1 cut(s) 504
BsgI GTGCAG 1 cut(s) 491
Bsh1236I CGCG 1 cut(s) 560
BshFI GGCC 2 cut(s) 131, 255
BshNI GGYRCC 1 cut(s) 733
BsiHKAI GWGCWC 4 cut(s) 216, 542, 605, 833
BsiSI CCGG 5 cut(s) 124, 535, 785, 794, 900
BslFI GGGAC 3 cut(s) 106, 382, 705
BslI CCNNNNNNNGG 3 cut(s) 777, 800, 931
BsmAI GTCTC 1 cut(s) 340
BsmFI GGGAC 3 cut(s) 106, 382, 705
BsmI GAATGC 1 cut(s) 797
BsnI GGCC 2 cut(s) 131, 255
Bso31I GGTCTC 1 cut(s) 340
Bsp1286I GDGCHC 4 cut(s) 216, 542, 605, 833
Bsp143I GATC 2 cut(s) 429, 681
Bsp19I CCATGG 1 cut(s) 849
BspACI CCGC 7 cut(s) 30, 220, 235, 238, 515, 626, 719
BspANI GGCC 2 cut(s) 131, 255
BspCNI CTCAG 1 cut(s) 687
BspFNI CGCG 1 cut(s) 560
BspLI GGNNCC 4 cut(s) 256, 735, 782, 923
BspMI ACCTGC 2 cut(s) 739, 906
BspQI GCTCTTC 1 cut(s) 383
BspT107I GGYRCC 1 cut(s) 733
BspTNI GGTCTC 1 cut(s) 340
BsrDI GCAATG 2 cut(s) 737, 879
BsrFI RCCGGY 1 cut(s) 793
BsrI ACTGG 1 cut(s) 310
BssAI RCCGGY 1 cut(s) 793
BssECI CCNNGG 2 cut(s) 849, 891
BssMI GATC 2 cut(s) 429, 681
BssT1I CCWWGG 2 cut(s) 849, 891
Bst4CI ACNGT 3 cut(s) 166, 607, 727
Bst6I CTCTTC 2 cut(s) 59, 383
BstBAI YACGTR 1 cut(s) 633
BstC8I GCNNGC 3 cut(s) 357, 717, 795
BstDEI CTNAG 1 cut(s) 695
BstDSI CCRYGG 1 cut(s) 849
BstF5I GGATG 2 cut(s) 81, 705
BstFNI CGCG 1 cut(s) 560
BstKTI GATC 2 cut(s) 432, 684
BstMAI GTCTC 1 cut(s) 340
BstMBI GATC 2 cut(s) 429, 681
BstMWI GCNNNNNNNGC 2 cut(s) 469, 803
BstNSI RCATGY 2 cut(s) 329, 453
BstSCI CCNGG 3 cut(s) 122, 533, 783
BstSNI TACGTA 1 cut(s) 633
BstUI CGCG 1 cut(s) 560
BstV1I GCAGC 1 cut(s) 504
BstV2I GAAGAC 2 cut(s) 312, 413
BsuI GTATCC 1 cut(s) 21
BsuRI GGCC 2 cut(s) 131, 255
BtgI CCRYGG 1 cut(s) 849
BtsCI GGATG 2 cut(s) 81, 705
BveI ACCTGC 2 cut(s) 739, 906
Cac8I GCNNGC 3 cut(s) 357, 717, 795
Cfr10I RCCGGY 1 cut(s) 793
Cfr13I GGNCC 2 cut(s) 162, 254
CseI GACGC 2 cut(s) 566, 970
Csp6I GTAC 3 cut(s) 295, 323, 589
CviAII CATG 4 cut(s) 326, 450, 640, 850
CviJI RGCY 8 cut(s) 131, 214, 255, 276, 355, 359, 540, 793
CviKI_1 RGCY 8 cut(s) 131, 214, 255, 276, 355, 359, 540, 793
CviQI GTAC 3 cut(s) 295, 323, 589
DdeI CTNAG 1 cut(s) 695
DpnI GATC 2 cut(s) 431, 683
DpnII GATC 2 cut(s) 429, 681
Eam1104I CTCTTC 2 cut(s) 59, 383
EarI CTCTTC 2 cut(s) 59, 383
EciI GGCGGA 3 cut(s) 19, 209, 224
Ecl136II GAGCTC 2 cut(s) 214, 540
Eco105I TACGTA 1 cut(s) 633
Eco130I CCWWGG 2 cut(s) 849, 891
Eco24I GRGCYC 2 cut(s) 216, 542
Eco31I GGTCTC 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 162
Eco53kI GAGCTC 2 cut(s) 214, 540
EcoICRI GAGCTC 2 cut(s) 214, 540
EcoT14I CCWWGG 2 cut(s) 849, 891
EcoT38I GRGCYC 2 cut(s) 216, 542
ErhI CCWWGG 2 cut(s) 849, 891
FaeI CATG 4 cut(s) 329, 453, 643, 853
FaiI YATR 7 cut(s) 16, 252, 327, 451, 641, 661, 851
FaqI GGGAC 3 cut(s) 106, 382, 705
FatI CATG 4 cut(s) 325, 449, 639, 849
FbaI TGATCA 1 cut(s) 681
Fnu4HI GCNGC 2 cut(s) 238, 518
FokI GGATG 2 cut(s) 68, 712
FriOI GRGCYC 2 cut(s) 216, 542
Fsp4HI GCNGC 2 cut(s) 238, 518
FspBI CTAG 2 cut(s) 341, 761
GluI GCNGC 2 cut(s) 238, 518
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 2 cut(s) 131, 255
HapII CCGG 5 cut(s) 124, 535, 785, 794, 900
HgaI GACGC 2 cut(s) 566, 970
Hin1II CATG 4 cut(s) 329, 453, 643, 853
HincII GTYRAC 1 cut(s) 447
HindII GTYRAC 1 cut(s) 447
HindIII AAGCTT 1 cut(s) 274
HinfI GANTC 4 cut(s) 26, 171, 754, 887
HpaII CCGG 5 cut(s) 124, 535, 785, 794, 900
HphI GGTGA 5 cut(s) 37, 523, 691, 733, 763
Hpy166II GTNNAC 3 cut(s) 447, 489, 943
Hpy188I TCNGA 1 cut(s) 170
Hpy188III TCNNGA 2 cut(s) 160, 400
Hpy8I GTNNAC 3 cut(s) 447, 489, 943
Hpy99I CGWCG 2 cut(s) 560, 986
HpyAV CCTTC 6 cut(s) 43, 241, 274, 658, 853, 953
HpyCH4III ACNGT 3 cut(s) 166, 607, 727
HpyCH4IV ACGT 1 cut(s) 632
HpyCH4V TGCA 5 cut(s) 318, 472, 585, 748, 915
HpyF10VI GCNNNNNNNGC 2 cut(s) 469, 803
HpyF3I CTNAG 1 cut(s) 695
HpySE526I ACGT 1 cut(s) 632
Hsp92II CATG 4 cut(s) 329, 453, 643, 853
KroI GCCGGC 1 cut(s) 793
KroNI GCCGGC 1 cut(s) 795
Ksp22I TGATCA 1 cut(s) 681
Kzo9I GATC 2 cut(s) 429, 681
LguI GCTCTTC 1 cut(s) 383
LmnI GCTCC 3 cut(s) 219, 537, 905
Lsp1109I GCAGC 1 cut(s) 504
LweI GCATC 1 cut(s) 735
MaeI CTAG 2 cut(s) 341, 761
MaeII ACGT 1 cut(s) 632
MaeIII GTNAC 3 cut(s) 61, 628, 721
MalI GATC 2 cut(s) 431, 683
MboI GATC 2 cut(s) 429, 681
MhlI GDGCHC 4 cut(s) 216, 542, 605, 833
MluCI AATT 1 cut(s) 465
MluI ACGCGT 1 cut(s) 558
MlyI GAGTC 3 cut(s) 35, 165, 881
MmeI TCCRAC 1 cut(s) 193
MroNI GCCGGC 1 cut(s) 793
MseI TTAA 1 cut(s) 873
MslI CAYNNNNRTG 1 cut(s) 437
MspA1I CMGCKG 1 cut(s) 517
MspI CCGG 5 cut(s) 124, 535, 785, 794, 900
MspR9I CCNGG 3 cut(s) 124, 535, 785
Mva1269I GAATGC 1 cut(s) 797
MvnI CGCG 1 cut(s) 560
MwoI GCNNNNNNNGC 2 cut(s) 469, 803
NaeI GCCGGC 1 cut(s) 795
NciI CCSGG 3 cut(s) 124, 535, 785
NcoI CCATGG 1 cut(s) 849
NdeII GATC 2 cut(s) 429, 681
NgoMIV GCCGGC 1 cut(s) 793
NlaIII CATG 4 cut(s) 329, 453, 643, 853
NlaIV GGNNCC 4 cut(s) 256, 735, 782, 923
NmeAIII GCCGAG 1 cut(s) 546
NmuCI GTSAC 1 cut(s) 721
NspI RCATGY 2 cut(s) 329, 453
PaqCI CACCTGC 2 cut(s) 739, 906
PciI ACATGT 2 cut(s) 325, 449
PciSI GCTCTTC 1 cut(s) 383
PcsI WCGNNNNNNNCGW 2 cut(s) 186, 294
PctI GAATGC 1 cut(s) 797
PdiI GCCGGC 1 cut(s) 795
PfeI GAWTC 1 cut(s) 754
PfoI TCCNGGA 1 cut(s) 122
PkrI GCNGC 2 cut(s) 239, 519
PleI GAGTC 3 cut(s) 34, 165, 881
PpsI GAGTC 3 cut(s) 34, 165, 881
Ppu21I YACGTR 1 cut(s) 633
PscI ACATGT 2 cut(s) 325, 449
Psp124BI GAGCTC 2 cut(s) 216, 542
PspN4I GGNNCC 4 cut(s) 256, 735, 782, 923
PspPI GGNCC 2 cut(s) 162, 254
RsaI GTAC 3 cut(s) 296, 324, 590
RsaNI GTAC 3 cut(s) 295, 323, 589
RseI CAYNNNNRTG 1 cut(s) 437
SacI GAGCTC 2 cut(s) 216, 542
SapI GCTCTTC 1 cut(s) 383
SaqAI TTAA 1 cut(s) 873
SatI GCNGC 2 cut(s) 238, 518
Sau3AI GATC 2 cut(s) 429, 681
Sau96I GGNCC 2 cut(s) 162, 254
SchI GAGTC 3 cut(s) 35, 165, 881
ScrFI CCNGG 3 cut(s) 124, 535, 785
SduI GDGCHC 4 cut(s) 216, 542, 605, 833
SfaNI GCATC 1 cut(s) 735
SinI GGWCC 1 cut(s) 162
SmiMI CAYNNNNRTG 1 cut(s) 437
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
SnaBI TACGTA 1 cut(s) 633
Sse9I AATT 1 cut(s) 465
SsiI CCGC 7 cut(s) 30, 220, 235, 238, 515, 626, 719
SspMI CTAG 2 cut(s) 341, 761
SstI GAGCTC 2 cut(s) 216, 542
StyD4I CCNGG 3 cut(s) 122, 533, 783
StyI CCWWGG 2 cut(s) 849, 891
TaaI ACNGT 3 cut(s) 166, 607, 727
TaiI ACGT 1 cut(s) 635
TaqI TCGA 2 cut(s) 36, 288
TasI AATT 1 cut(s) 465
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 1 cut(s) 754
Tru1I TTAA 1 cut(s) 873
Tru9I TTAA 1 cut(s) 873
TseFI GTSAC 1 cut(s) 721
TseI GCWGC 1 cut(s) 517
Tsp45I GTSAC 1 cut(s) 721
TspDTI ATGAA 4 cut(s) 46, 628, 801, 984
TspGWI ACGGA 2 cut(s) 447, 760
VpaK11BI GGWCC 1 cut(s) 162
XceI RCATGY 2 cut(s) 329, 453
XspI CTAG 2 cut(s) 341, 761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.