RchiOBHm_Chr1g0382461

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016927
Physical Location & Seq
Forward (+)
67329876 .. 67331016
1141 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60543

Sequence Viewer

Length: 1002 bp
ATGTTAATCATTTCAACGTTACCATACCTGGACTCCGCCCTCGACCTTATCACCTTACTCTTCATTTTCACCCTCCTCCTCCTCTCCCTCCTCTCTCTTTGCTTCATCTTCCACCTCTGCTTCAAGTCCCGGACCGCCCACCACCTCCAGCACTTCAACTCTCTCTGGACCGTCCGATTCCTCCTCGTCATCTTCGTCATCTTCTGGTCCTTCAACGAGCTCATCCGCCTCCCTTCCTTCCGCCGCAGCTATCTCTACGGCCCCTTTCCCTTCCTCTCAACCTTCTTCAAGGTCGACGGGTACAAAGAAGAAGCCCAGTTTTGCAAGGTACACGTGAGCGCCTCGCTAGGGTTCTTCCAGCCAGCTTTCTTAGGTACTCTGCTCTTTCTTGTTGATGTTTCGATCAAGAAGAAGACTCCAAATGTCTCATGGGCGATCATCTTCGTGCTGTCAACATGTGTGCCCTTGCTATTGGTCCAGATATTCTTCTTGTTCTCGCCGATAGATAAGATGCTTTTACCGCTGCCGGCTTGTTTTACCCAGAGCTCTATGGTGAAAATCGACAAGTTTGGTAACAAGGTTGTGTTGTGCAAGTACCCTTTGTTGAGCACCGTGATATTTGGTGCCTTTGCGGTTACATATTTCATGTGGTTCTTGTTCTCATTATGGAAGGTGCTGGCTTTGGTGATAAACAAGGGATTGAGGATGCGGATTTATGCACTTGCGGTGACTGTGTTGGTGCCGTTGCCGGTGCAGGTTATCCTGCTGGCTGTGTCGGTCGTGTGGAAGCCGGACGATTCGGATTTTGCGGTCATTTCATTCGTGGTGTTTTTGATCACGTTCTTCAGCTTCGCCGTGGGGCAGGGCATTTTGGTCATTAAACCCATTGCCGACTCCTTGGCAGCCGGAGGTCCATGTAGCCGTTGGAATCCTCACGAGGAGGCAGACGGAAAAAAAAATGACGGGAAAAATGATGAAGAGAAAAATGAAAGCGTGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

333

Amino Acids

37.74

Weight (kDa)

9.01

Isoelectric Point (pI)

31.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016927)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g32590
malus_domestica MD01G1227000.v1.1 MD07G1297300.v1.1
prunus_persica Prupe.2G316900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0382461
rosa_laevigata RLG00000026178
rosa_multiflora Rmu_sc0000110.1_g000049 Rmu_sc0000110.1_g000050 Rmu_sc0003885.1_g000010
rosa_roxburghii Rroxscaffold_4G00278090
rosa_rugosa Rorug01G0434500
rosa_samantha Rh1CG429600 Rh1DG447700
rosa_wichuraiana Rw1G041190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 745
AccB1I GGYRCC 2 cut(s) 623, 739
AccI GTMKAC 1 cut(s) 294
AclI AACGTT 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 829
AcvI CACGTG 1 cut(s) 334
AfaI GTAC 4 cut(s) 302, 330, 376, 596
AfiI CCNNNNNNNGG 1 cut(s) 348
AflIII ACRYGT 2 cut(s) 331, 455
AgsI TTSAA 5 cut(s) 15, 124, 157, 214, 289
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 5 cut(s) 220, 249, 365, 546, 849
AluI AGCT 5 cut(s) 220, 249, 365, 546, 849
Alw21I GWGCWC 3 cut(s) 222, 548, 611
Alw26I GTCTC 1 cut(s) 430
AoxI GGCC 1 cut(s) 259
ApeKI GCWGC 3 cut(s) 246, 523, 902
AspLEI GCGC 1 cut(s) 341
AspS9I GGNCC 6 cut(s) 132, 168, 207, 260, 475, 911
AsuC2I CCSGG 1 cut(s) 130
AsuHPI GGTGA 5 cut(s) 43, 61, 565, 697, 739
AvaII GGWCC 5 cut(s) 132, 168, 207, 475, 911
BaeGI GKGCMC 1 cut(s) 465
BanI GGYRCC 2 cut(s) 623, 739
BanII GRGCYC 2 cut(s) 222, 548
BauI CACGAG 1 cut(s) 935
BbrPI CACGTG 1 cut(s) 334
BbsI GAAGAC 1 cut(s) 419
Bbv12I GWGCWC 3 cut(s) 222, 548, 611
BbvI GCAGC 3 cut(s) 258, 510, 914
BceAI ACGGC 4 cut(s) 274, 727, 839, 906
BciT130I CCWGG 1 cut(s) 29
BclI TGATCA 1 cut(s) 834
BcnI CCSGG 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 430
BfaI CTAG 1 cut(s) 347
BfoI RGCGCY 1 cut(s) 342
BfuAI ACCTGC 1 cut(s) 745
BisI GCNGC 4 cut(s) 244, 247, 524, 903
BlsI GCNGC 4 cut(s) 245, 248, 525, 904
Bme1390I CCNGG 2 cut(s) 29, 130
Bme18I GGWCC 5 cut(s) 132, 168, 207, 475, 911
BmgT120I GGNCC 6 cut(s) 132, 168, 207, 260, 475, 911
BmiI GGNNCC 3 cut(s) 262, 625, 741
BmrFI CCNGG 2 cut(s) 29, 130
BmrI ACTGGG 1 cut(s) 310
BmsI GCATC 2 cut(s) 501, 696
BmuI ACTGGG 1 cut(s) 310
BpiI GAAGAC 1 cut(s) 419
BpmI CTGGAG 1 cut(s) 131
BpuMI CCSGG 1 cut(s) 130
BsaAI YACGTR 1 cut(s) 334
BsaJI CCNNGG 2 cut(s) 855, 897
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 1 cut(s) 348
Bse118I RCCGGY 2 cut(s) 526, 748
Bse1I ACTGG 1 cut(s) 316
Bse3DI GCAATG 1 cut(s) 885
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 2 cut(s) 855, 897
BseGI GGATG 2 cut(s) 222, 711
BseLI CCNNNNNNNGG 1 cut(s) 348
BseMI GCAATG 1 cut(s) 885
BseNI ACTGG 1 cut(s) 316
BseRI GAGGAG 6 cut(s) 65, 68, 71, 80, 173, 953
BseSI GKGCMC 1 cut(s) 465
BseXI GCAGC 3 cut(s) 258, 510, 914
BsgI GTGCAG 1 cut(s) 773
Bsh1285I CGRYCG 1 cut(s) 780
BshFI GGCC 1 cut(s) 261
BshNI GGYRCC 2 cut(s) 623, 739
BsiEI CGRYCG 1 cut(s) 780
BsiHKAI GWGCWC 3 cut(s) 222, 548, 611
BsiSI CCGG 5 cut(s) 130, 527, 749, 791, 906
BslFI GGGAC 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 348
BsmAI GTCTC 1 cut(s) 430
BsmFI GGGAC 1 cut(s) 112
BsnI GGCC 1 cut(s) 261
Bsp1286I GDGCHC 4 cut(s) 222, 465, 548, 611
Bsp143I GATC 3 cut(s) 402, 435, 834
BspANI GGCC 1 cut(s) 261
BspLI GGNNCC 3 cut(s) 262, 625, 741
BspMI ACCTGC 1 cut(s) 745
BspT107I GGYRCC 2 cut(s) 623, 739
BsrDI GCAATG 1 cut(s) 885
BsrFI RCCGGY 2 cut(s) 526, 748
BsrI ACTGG 1 cut(s) 316
BssAI RCCGGY 2 cut(s) 526, 748
BssECI CCNNGG 2 cut(s) 855, 897
BssMI GATC 3 cut(s) 402, 435, 834
BssSI CACGAG 1 cut(s) 935
BssT1I CCWWGG 1 cut(s) 897
Bst2BI CACGAG 1 cut(s) 935
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 3 cut(s) 172, 613, 733
Bst6I CTCTTC 2 cut(s) 65, 972
BstBAI YACGTR 1 cut(s) 334
BstC8I GCNNGC 4 cut(s) 363, 528, 678, 768
BstDEI CTNAG 1 cut(s) 370
BstDSI CCRYGG 1 cut(s) 855
BstF5I GGATG 2 cut(s) 222, 711
BstH2I RGCGCY 1 cut(s) 342
BstHHI GCGC 1 cut(s) 341
BstKTI GATC 3 cut(s) 405, 438, 837
BstMAI GTCTC 1 cut(s) 430
BstMBI GATC 3 cut(s) 402, 435, 834
BstMCI CGRYCG 1 cut(s) 780
BstMWI GCNNNNNNNGC 1 cut(s) 520
BstNI CCWGG 1 cut(s) 29
BstNSI RCATGY 1 cut(s) 459
BstSCI CCNGG 2 cut(s) 27, 128
BstSLI GKGCMC 1 cut(s) 465
BstV1I GCAGC 3 cut(s) 258, 510, 914
BstV2I GAAGAC 1 cut(s) 419
BsuRI GGCC 1 cut(s) 261
BtgI CCRYGG 1 cut(s) 855
BtsCI GGATG 2 cut(s) 222, 711
BveI ACCTGC 1 cut(s) 745
Cac8I GCNNGC 4 cut(s) 363, 528, 678, 768
CfoI GCGC 1 cut(s) 341
Cfr10I RCCGGY 2 cut(s) 526, 748
Cfr13I GGNCC 6 cut(s) 132, 168, 207, 260, 475, 911
CpoI CGGWCCG 1 cut(s) 132
Csp6I GTAC 4 cut(s) 301, 329, 375, 595
CspI CGGWCCG 1 cut(s) 132
CviAII CATG 4 cut(s) 429, 456, 646, 915
CviQI GTAC 4 cut(s) 301, 329, 375, 595
DdeI CTNAG 1 cut(s) 370
DpnI GATC 3 cut(s) 404, 437, 836
DpnII GATC 3 cut(s) 402, 435, 834
Eam1104I CTCTTC 2 cut(s) 65, 972
EarI CTCTTC 2 cut(s) 65, 972
EciI GGCGGA 3 cut(s) 25, 215, 230
Ecl136II GAGCTC 2 cut(s) 220, 546
Eco130I CCWWGG 1 cut(s) 897
Eco24I GRGCYC 2 cut(s) 222, 548
Eco47I GGWCC 5 cut(s) 132, 168, 207, 475, 911
Eco53kI GAGCTC 2 cut(s) 220, 546
Eco57I CTGAAG 1 cut(s) 829
Eco72I CACGTG 1 cut(s) 334
EcoICRI GAGCTC 2 cut(s) 220, 546
EcoRII CCWGG 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 897
EcoT38I GRGCYC 2 cut(s) 222, 548
ErhI CCWWGG 1 cut(s) 897
FaeI CATG 4 cut(s) 432, 459, 649, 918
FaiI YATR 9 cut(s) 25, 430, 457, 551, 640, 647, 667, 717, 916
FaqI GGGAC 1 cut(s) 112
FatI CATG 4 cut(s) 428, 455, 645, 914
FbaI TGATCA 1 cut(s) 834
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 4 cut(s) 244, 247, 524, 903
FokI GGATG 2 cut(s) 209, 718
FriOI GRGCYC 2 cut(s) 222, 548
Fsp4HI GCNGC 4 cut(s) 244, 247, 524, 903
FspBI CTAG 1 cut(s) 347
GlaI GCGC 1 cut(s) 340
GluI GCNGC 4 cut(s) 244, 247, 524, 903
GsuI CTGGAG 1 cut(s) 131
HaeII RGCGCY 1 cut(s) 342
HaeIII GGCC 1 cut(s) 261
HapII CCGG 5 cut(s) 130, 527, 749, 791, 906
HhaI GCGC 1 cut(s) 341
Hin1II CATG 4 cut(s) 432, 459, 649, 918
Hin6I GCGC 1 cut(s) 339
HinP1I GCGC 1 cut(s) 339
HincII GTYRAC 2 cut(s) 295, 453
HindII GTYRAC 2 cut(s) 295, 453
HinfI GANTC 6 cut(s) 32, 177, 415, 797, 893, 928
HpaII CCGG 5 cut(s) 130, 527, 749, 791, 906
HphI GGTGA 5 cut(s) 43, 61, 565, 697, 739
Hpy166II GTNNAC 3 cut(s) 295, 331, 453
Hpy188I TCNGA 3 cut(s) 176, 802, 1001
Hpy188III TCNNGA 4 cut(s) 166, 406, 478, 935
Hpy8I GTNNAC 3 cut(s) 295, 331, 453
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 6 cut(s) 220, 243, 247, 280, 292, 664
HpyCH4III ACNGT 3 cut(s) 172, 613, 733
HpyCH4IV ACGT 3 cut(s) 17, 333, 839
HpyCH4V TGCA 4 cut(s) 324, 591, 719, 754
HpyF10VI GCNNNNNNNGC 1 cut(s) 520
HpyF3I CTNAG 1 cut(s) 370
HpySE526I ACGT 3 cut(s) 17, 333, 839
Hsp92II CATG 4 cut(s) 432, 459, 649, 918
HspAI GCGC 1 cut(s) 339
KroI GCCGGC 1 cut(s) 526
KroNI GCCGGC 1 cut(s) 528
Ksp22I TGATCA 1 cut(s) 834
Kzo9I GATC 3 cut(s) 402, 435, 834
Lsp1109I GCAGC 3 cut(s) 258, 510, 914
LweI GCATC 2 cut(s) 501, 696
MaeI CTAG 1 cut(s) 347
MaeII ACGT 3 cut(s) 17, 333, 839
MaeIII GTNAC 4 cut(s) 18, 572, 634, 727
MalI GATC 3 cut(s) 404, 437, 836
MboI GATC 3 cut(s) 402, 435, 834
MhlI GDGCHC 4 cut(s) 222, 465, 548, 611
MlyI GAGTC 3 cut(s) 26, 409, 887
MmeI TCCRAC 1 cut(s) 905
MroNI GCCGGC 1 cut(s) 526
MseI TTAA 2 cut(s) 5, 879
MslI CAYNNNNRTG 1 cut(s) 443
MspA1I CMGCKG 1 cut(s) 523
MspI CCGG 5 cut(s) 130, 527, 749, 791, 906
MspR9I CCNGG 2 cut(s) 29, 130
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 1 cut(s) 520
NaeI GCCGGC 1 cut(s) 528
NciI CCSGG 1 cut(s) 130
NdeII GATC 3 cut(s) 402, 435, 834
NgoMIV GCCGGC 1 cut(s) 526
NlaIII CATG 4 cut(s) 432, 459, 649, 918
NlaIV GGNNCC 3 cut(s) 262, 625, 741
NmuCI GTSAC 1 cut(s) 727
NspI RCATGY 1 cut(s) 459
PciI ACATGT 1 cut(s) 455
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PdiI GCCGGC 1 cut(s) 528
PfeI GAWTC 3 cut(s) 177, 797, 928
PfoI TCCNGGA 1 cut(s) 128
PkrI GCNGC 4 cut(s) 245, 248, 525, 904
PleI GAGTC 3 cut(s) 26, 409, 887
PmaCI CACGTG 1 cut(s) 334
PmlI CACGTG 1 cut(s) 334
PpsI GAGTC 3 cut(s) 26, 409, 887
Ppu21I YACGTR 1 cut(s) 334
PscI ACATGT 1 cut(s) 455
Psp124BI GAGCTC 2 cut(s) 222, 548
Psp1406I AACGTT 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 27
PspCI CACGTG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 3 cut(s) 262, 625, 741
PspPI GGNCC 6 cut(s) 132, 168, 207, 260, 475, 911
RsaI GTAC 4 cut(s) 302, 330, 376, 596
RsaNI GTAC 4 cut(s) 301, 329, 375, 595
RseI CAYNNNNRTG 1 cut(s) 443
Rsr2I CGGWCCG 1 cut(s) 132
RsrII CGGWCCG 1 cut(s) 132
SacI GAGCTC 2 cut(s) 222, 548
SalI GTCGAC 1 cut(s) 293
SaqAI TTAA 2 cut(s) 5, 879
SatI GCNGC 4 cut(s) 244, 247, 524, 903
Sau3AI GATC 3 cut(s) 402, 435, 834
Sau96I GGNCC 6 cut(s) 132, 168, 207, 260, 475, 911
SchI GAGTC 3 cut(s) 26, 409, 887
ScrFI CCNGG 2 cut(s) 29, 130
SduI GDGCHC 4 cut(s) 222, 465, 548, 611
SfaNI GCATC 2 cut(s) 501, 696
SinI GGWCC 5 cut(s) 132, 168, 207, 475, 911
SmiMI CAYNNNNRTG 1 cut(s) 443
SspMI CTAG 1 cut(s) 347
SstI GAGCTC 2 cut(s) 222, 548
StyD4I CCNGG 2 cut(s) 27, 128
StyI CCWWGG 1 cut(s) 897
TaaI ACNGT 3 cut(s) 172, 613, 733
TaiI ACGT 3 cut(s) 20, 336, 842
TaqI TCGA 4 cut(s) 42, 294, 401, 561
TaqII GACCGA 1 cut(s) 766
TauI GCSGC 1 cut(s) 246
TfiI GAWTC 3 cut(s) 177, 797, 928
Tru1I TTAA 2 cut(s) 5, 879
Tru9I TTAA 2 cut(s) 5, 879
TseFI GTSAC 1 cut(s) 727
TseI GCWGC 3 cut(s) 246, 523, 902
Tsp45I GTSAC 1 cut(s) 727
TspDTI ATGAA 6 cut(s) 52, 94, 634, 807, 990, 1002
TspGWI ACGGA 1 cut(s) 963
VpaK11BI GGWCC 5 cut(s) 132, 168, 207, 475, 911
XceI RCATGY 1 cut(s) 459
XcmI CCANNNNNNNNNTGG 2 cut(s) 426, 921
XmiI GTMKAC 1 cut(s) 294
XspI CTAG 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.