Rorug01G0434500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0016927
Physical Location & Seq
Reverse (-)
53351229 .. 53353065
1837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0434500.1

Sequence Viewer

Length: 1122 bp
ATGGCAATTGAGTGCATGAAAACCCTAAATCACCACAAAGAAGATGACCAAAAGCCACTAGTCTTCGACGCTTCGTTGCTCCGGTACCAAACTGACATACCCAAGCAGTTCATTTGGCCCGACGACGAAAAGCCATGTCCTAACGCACCAGAATTACAAGTCCCACTTATAGACTTGGGCGACTTCCTCTCCGGCAACCCCGAGGCCGCAATGAAAGCCTCGAGGCTCGTCGGAGAAGCCTGCGAAAAACATGGCTTCTTTCTCGTCGTGAATCACGGCGTTAAAGACAGTCTCATAGCTGATGCACACCAATACATGGACGACTTCTTTGGTTTGCCCCTCTCTGAAAAACAGAGGGCTCAGAGGAAAGCCGGCGAGCACTGCGGCTACGCCAGTAGCTTCACCGGAAGGTTCTCGTCAAAACTCCCCTGGAAAGAAACTCTGTCGTTTCGCTACACCGCGGACCAAAGCGAGTCCAATGTTGTTAAAAATTACCTCTGCAATGCTATGGGAGAAGACTTCGAAGAATTCGGGAGGGTGTACCAAGACTATAGTGAGGCCATGAGCACACTTTCCATAGGGATTATGGAACTTTTGGGAATGAGTCTCGGCGTGGACAGAACACATTTCAAGGAATTTTTCGGAGACAATGATTCGATAATGAGGTTGAATTACTATCCACCGTGCCAGAAACCAGACCAGACTTTAGGCACCGGACCTCATTGTGATCCGACCTCCTTAACCATTCTTCACCAAGACCAAGTGGGGGGACTTCAAGTGTTTGTGGACGAAGAATGGCGCTCGATCAGCCCGAATTTGAACGCCTTTGTTGTTAACATTGGTGACACCTTCATGGCTCTTTCAAACGGGAGGTACAAAAGTTGCTTGCACAGAGCAGTAGTGAACAGCAAAACTCCGAGGAAATCACTAGCGTTTTTCTTATGTCCGAGAGATGATAAGGTGGTGAAGCCACCGAGCGGGTTGGTGGATAGTTCGTACCCGAGAATATACCCGGATTTCACATGGCCGATGTTGCTGGAGTTCACACAGAAGCATTACAGAGCTGACATGATGACCCTGCAAGCCTTCACAAACTGGCTTCAAGAGCAGAGGAGCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

373

Amino Acids

42.42

Weight (kDa)

5.49

Isoelectric Point (pI)

37.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 54 - 158 2.8e-26 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 218 - 316 9.3e-37 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016927)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g32590
malus_domestica MD01G1227000.v1.1 MD07G1297300.v1.1
prunus_persica Prupe.2G316900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0382461
rosa_laevigata RLG00000026178
rosa_multiflora Rmu_sc0000110.1_g000049 Rmu_sc0000110.1_g000050 Rmu_sc0003885.1_g000010
rosa_roxburghii Rroxscaffold_4G00278090
rosa_rugosa Rorug01G0434500
rosa_samantha Rh1CG429600 Rh1DG447700
rosa_wichuraiana Rw1G041190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 220
Acc65I GGTACC 1 cut(s) 84
AccB1I GGYRCC 2 cut(s) 84, 710
AccB7I CCANNNNNTGG 1 cut(s) 316
AccBSI CCGCTC 1 cut(s) 978
AccII CGCG 1 cut(s) 461
AciI CCGC 5 cut(s) 207, 384, 459, 461, 978
AclWI GGATC 1 cut(s) 722
AcoI YGGCCR 1 cut(s) 1025
AcsI RAATTY 3 cut(s) 527, 635, 814
AfaI GTAC 4 cut(s) 86, 542, 875, 998
AfiI CCNNNNNNNGG 3 cut(s) 316, 766, 977
AgsI TTSAA 6 cut(s) 631, 670, 776, 820, 864, 1103
AhlI ACTAGT 1 cut(s) 58
AjnI CCWGG 1 cut(s) 428
AluBI AGCT 4 cut(s) 299, 399, 1064, 1119
AluI AGCT 4 cut(s) 299, 399, 1064, 1119
Alw21I GWGCWC 2 cut(s) 381, 569
Alw26I GTCTC 3 cut(s) 296, 611, 639
AlwI GGATC 1 cut(s) 722
Ama87I CYCGRG 3 cut(s) 200, 220, 1000
AoxI GGCC 4 cut(s) 116, 204, 558, 1025
ApeKI GCWGC 1 cut(s) 1116
ApoI RAATTY 3 cut(s) 527, 635, 814
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
Asp718I GGTACC 1 cut(s) 84
AspLEI GCGC 1 cut(s) 801
AspS9I GGNCC 3 cut(s) 117, 463, 716
AsuC2I CCSGG 1 cut(s) 1013
AsuHPI GGTGA 5 cut(s) 23, 394, 743, 854, 976
AsuII TTCGAA 1 cut(s) 522
AvaI CYCGRG 3 cut(s) 200, 220, 1000
AvaII GGWCC 2 cut(s) 463, 716
BaeI ACNNNNGTAYC 2 cut(s) 865, 898
BanI GGYRCC 2 cut(s) 84, 710
BanII GRGCYC 1 cut(s) 361
BbsI GAAGAC 2 cut(s) 55, 522
Bbv12I GWGCWC 2 cut(s) 381, 569
BceAI ACGGC 1 cut(s) 292
BciT130I CCWGG 1 cut(s) 430
BcnI CCSGG 1 cut(s) 1013
BcoDI GTCTC 3 cut(s) 296, 611, 639
BcuI ACTAGT 1 cut(s) 58
BfaI CTAG 2 cut(s) 59, 929
BfmI CTRYAG 1 cut(s) 550
BfoI RGCGCY 1 cut(s) 802
BisI GCNGC 3 cut(s) 207, 385, 1117
BlsI GCNGC 3 cut(s) 208, 386, 1118
Bme1390I CCNGG 2 cut(s) 430, 1013
Bme18I GGWCC 2 cut(s) 463, 716
BmeT110I CYCGRG 3 cut(s) 200, 220, 1000
BmgT120I GGNCC 3 cut(s) 117, 463, 716
BmiI GGNNCC 2 cut(s) 86, 712
BmrFI CCNGG 2 cut(s) 430, 1013
BmsI GCATC 1 cut(s) 292
BpiI GAAGAC 2 cut(s) 55, 522
BpmI CTGGAG 1 cut(s) 1058
Bpu14I TTCGAA 1 cut(s) 522
BpuMI CCSGG 1 cut(s) 1013
BsaJI CCNNGG 4 cut(s) 201, 428, 459, 917
BsaWI WCCGGW 3 cut(s) 81, 404, 713
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bsc4I CCNNNNNNNGG 3 cut(s) 316, 766, 977
Bse118I RCCGGY 1 cut(s) 371
Bse1I ACTGG 2 cut(s) 393, 1100
Bse3DI GCAATG 2 cut(s) 216, 508
BseBI CCWGG 1 cut(s) 430
BseDI CCNNGG 4 cut(s) 201, 428, 459, 917
BseLI CCNNNNNNNGG 3 cut(s) 316, 766, 977
BseMI GCAATG 2 cut(s) 216, 508
BseMII CTCAG 1 cut(s) 374
BseNI ACTGG 2 cut(s) 393, 1100
Bsh1236I CGCG 1 cut(s) 461
BshFI GGCC 4 cut(s) 118, 206, 560, 1027
BshNI GGYRCC 2 cut(s) 84, 710
BsiHKAI GWGCWC 2 cut(s) 381, 569
BsiHKCI CYCGRG 3 cut(s) 200, 220, 1000
BsiSI CCGG 6 cut(s) 82, 192, 372, 405, 714, 1013
BslFI GGGAC 2 cut(s) 146, 783
BslI CCNNNNNNNGG 3 cut(s) 316, 766, 977
BsmAI GTCTC 3 cut(s) 296, 611, 639
BsmFI GGGAC 2 cut(s) 146, 783
BsnI GGCC 4 cut(s) 118, 206, 560, 1027
BsoBI CYCGRG 3 cut(s) 200, 220, 1000
Bsp119I TTCGAA 1 cut(s) 522
Bsp1286I GDGCHC 3 cut(s) 361, 381, 569
Bsp143I GATC 2 cut(s) 727, 804
BspACI CCGC 5 cut(s) 207, 384, 459, 461, 978
BspANI GGCC 4 cut(s) 118, 206, 560, 1027
BspCNI CTCAG 1 cut(s) 373
BspFNI CGCG 1 cut(s) 461
BspLI GGNNCC 2 cut(s) 86, 712
BspPI GGATC 1 cut(s) 722
BspT104I TTCGAA 1 cut(s) 522
BspT107I GGYRCC 2 cut(s) 84, 710
BsrBI CCGCTC 1 cut(s) 978
BsrDI GCAATG 2 cut(s) 216, 508
BsrFI RCCGGY 1 cut(s) 371
BsrI ACTGG 2 cut(s) 393, 1100
BssAI RCCGGY 1 cut(s) 371
BssECI CCNNGG 4 cut(s) 201, 428, 459, 917
BssMI GATC 2 cut(s) 727, 804
Bst2UI CCWGG 1 cut(s) 430
Bst4CI ACNGT 2 cut(s) 290, 684
BstBI TTCGAA 1 cut(s) 522
BstC8I GCNNGC 5 cut(s) 241, 373, 377, 887, 1083
BstDEI CTNAG 1 cut(s) 360
BstDSI CCRYGG 1 cut(s) 459
BstFNI CGCG 1 cut(s) 461
BstH2I RGCGCY 1 cut(s) 802
BstHHI GCGC 1 cut(s) 801
BstKTI GATC 2 cut(s) 730, 807
BstMAI GTCTC 3 cut(s) 296, 611, 639
BstMBI GATC 2 cut(s) 727, 804
BstMWI GCNNNNNNNGC 5 cut(s) 215, 381, 807, 1033, 1105
BstNI CCWGG 1 cut(s) 430
BstSCI CCNGG 2 cut(s) 428, 1011
BstSFI CTRYAG 1 cut(s) 550
BstUI CGCG 1 cut(s) 461
BstV2I GAAGAC 2 cut(s) 55, 522
BsuRI GGCC 4 cut(s) 118, 206, 560, 1027
BtgI CCRYGG 1 cut(s) 459
BtsI GCAGTG 1 cut(s) 379
BtsIMutI CAGTG 1 cut(s) 379
Cac8I GCNNGC 5 cut(s) 241, 373, 377, 887, 1083
CfoI GCGC 1 cut(s) 801
Cfr10I RCCGGY 1 cut(s) 371
Cfr13I GGNCC 3 cut(s) 117, 463, 716
Cfr42I CCGCGG 1 cut(s) 462
CseI GACGC 1 cut(s) 77
Csp6I GTAC 4 cut(s) 85, 541, 874, 997
CviAII CATG 8 cut(s) 16, 135, 251, 316, 562, 853, 1023, 1069
CviQI GTAC 4 cut(s) 85, 541, 874, 997
DdeI CTNAG 1 cut(s) 360
DpnI GATC 2 cut(s) 729, 806
DpnII GATC 2 cut(s) 727, 804
EaeI YGGCCR 1 cut(s) 1025
Eco24I GRGCYC 1 cut(s) 361
Eco47I GGWCC 2 cut(s) 463, 716
Eco88I CYCGRG 3 cut(s) 200, 220, 1000
EcoRI GAATTC 1 cut(s) 527
EcoRII CCWGG 1 cut(s) 428
EcoT38I GRGCYC 1 cut(s) 361
FaeI CATG 8 cut(s) 19, 138, 254, 319, 565, 856, 1026, 1072
FalI AAGNNNNNCTT 2 cut(s) 150, 182
FaqI GGGAC 2 cut(s) 146, 783
FatI CATG 8 cut(s) 15, 134, 250, 315, 561, 852, 1022, 1068
FauI CCCGC 1 cut(s) 971
Fnu4HI GCNGC 3 cut(s) 207, 385, 1117
FriOI GRGCYC 1 cut(s) 361
Fsp4HI GCNGC 3 cut(s) 207, 385, 1117
FspBI CTAG 2 cut(s) 59, 929
GlaI GCGC 1 cut(s) 800
GluI GCNGC 3 cut(s) 207, 385, 1117
GsuI CTGGAG 1 cut(s) 1058
HaeII RGCGCY 1 cut(s) 802
HaeIII GGCC 4 cut(s) 118, 206, 560, 1027
HapII CCGG 6 cut(s) 82, 192, 372, 405, 714, 1013
HgaI GACGC 1 cut(s) 77
HhaI GCGC 1 cut(s) 801
Hin1II CATG 8 cut(s) 19, 138, 254, 319, 565, 856, 1026, 1072
Hin6I GCGC 1 cut(s) 799
HinP1I GCGC 1 cut(s) 799
HincII GTYRAC 1 cut(s) 835
HindII GTYRAC 1 cut(s) 835
HinfI GANTC 4 cut(s) 271, 473, 604, 653
HpaI GTTAAC 1 cut(s) 835
HpaII CCGG 6 cut(s) 82, 192, 372, 405, 714, 1013
HphI GGTGA 5 cut(s) 23, 394, 743, 854, 976
Hpy166II GTNNAC 6 cut(s) 541, 616, 787, 835, 904, 1044
Hpy188I TCNGA 7 cut(s) 233, 346, 363, 644, 732, 918, 948
Hpy188III TCNNGA 3 cut(s) 268, 532, 1103
Hpy8I GTNNAC 6 cut(s) 541, 616, 787, 835, 904, 1044
Hpy99I CGWCG 5 cut(s) 71, 125, 128, 233, 269
HpyAV CCTTC 3 cut(s) 402, 859, 1096
HpyCH4III ACNGT 2 cut(s) 290, 684
HpyCH4V TGCA 5 cut(s) 15, 305, 501, 889, 1081
HpyF10VI GCNNNNNNNGC 5 cut(s) 215, 381, 807, 1033, 1105
HpyF3I CTNAG 1 cut(s) 360
Hsp92II CATG 8 cut(s) 19, 138, 254, 319, 565, 856, 1026, 1072
HspAI GCGC 1 cut(s) 799
KpnI GGTACC 1 cut(s) 88
KroI GCCGGC 1 cut(s) 371
KroNI GCCGGC 1 cut(s) 373
KspAI GTTAAC 1 cut(s) 835
KspI CCGCGG 1 cut(s) 462
Kzo9I GATC 2 cut(s) 727, 804
LmnI GCTCC 2 cut(s) 84, 1113
LweI GCATC 1 cut(s) 292
MaeI CTAG 2 cut(s) 59, 929
MaeIII GTNAC 1 cut(s) 842
MalI GATC 2 cut(s) 729, 806
MbiI CCGCTC 1 cut(s) 978
MboI GATC 2 cut(s) 727, 804
MboII GAAGA 6 cut(s) 53, 55, 527, 536, 740, 803
MfeI CAATTG 1 cut(s) 6
MhlI GDGCHC 3 cut(s) 361, 381, 569
MluCI AATT 7 cut(s) 6, 152, 490, 527, 635, 670, 814
MlyI GAGTC 2 cut(s) 482, 613
MmeI TCCRAC 2 cut(s) 211, 755
MroNI GCCGGC 1 cut(s) 371
MseI TTAA 4 cut(s) 282, 486, 740, 834
MslI CAYNNNNRTG 1 cut(s) 851
MspA1I CMGCKG 2 cut(s) 461, 1119
MspI CCGG 6 cut(s) 82, 192, 372, 405, 714, 1013
MspR9I CCNGG 2 cut(s) 430, 1013
MunI CAATTG 1 cut(s) 6
MvaI CCWGG 1 cut(s) 430
MvnI CGCG 1 cut(s) 461
MwoI GCNNNNNNNGC 5 cut(s) 215, 381, 807, 1033, 1105
NaeI GCCGGC 1 cut(s) 373
NciI CCSGG 1 cut(s) 1013
NdeII GATC 2 cut(s) 727, 804
NgoMIV GCCGGC 1 cut(s) 371
NlaIII CATG 8 cut(s) 19, 138, 254, 319, 565, 856, 1026, 1072
NlaIV GGNNCC 2 cut(s) 86, 712
NmeAIII GCCGAG 1 cut(s) 588
NmuCI GTSAC 1 cut(s) 842
NspV TTCGAA 1 cut(s) 522
PaeR7I CTCGAG 1 cut(s) 220
PcsI WCGNNNNNNNCGW 1 cut(s) 809
PdiI GCCGGC 1 cut(s) 373
PfeI GAWTC 2 cut(s) 271, 653
PflMI CCANNNNNTGG 1 cut(s) 316
PkrI GCNGC 3 cut(s) 208, 386, 1118
PleI GAGTC 2 cut(s) 481, 612
PpsI GAGTC 2 cut(s) 481, 612
Psp6I CCWGG 1 cut(s) 428
PspGI CCWGG 1 cut(s) 428
PspN4I GGNNCC 2 cut(s) 86, 712
PspPI GGNCC 3 cut(s) 117, 463, 716
PspXI VCTCGAGB 1 cut(s) 220
PvuII CAGCTG 1 cut(s) 1119
RsaI GTAC 4 cut(s) 86, 542, 875, 998
RsaNI GTAC 4 cut(s) 85, 541, 874, 997
RseI CAYNNNNRTG 1 cut(s) 851
SacII CCGCGG 1 cut(s) 462
SaqAI TTAA 4 cut(s) 282, 486, 740, 834
SatI GCNGC 3 cut(s) 207, 385, 1117
Sau3AI GATC 2 cut(s) 727, 804
Sau96I GGNCC 3 cut(s) 117, 463, 716
SchI GAGTC 2 cut(s) 482, 613
ScrFI CCNGG 2 cut(s) 430, 1013
SduI GDGCHC 3 cut(s) 361, 381, 569
SfaNI GCATC 1 cut(s) 292
SfcI CTRYAG 1 cut(s) 550
Sfr274I CTCGAG 1 cut(s) 220
Sfr303I CCGCGG 1 cut(s) 462
SfuI TTCGAA 1 cut(s) 522
SgrBI CCGCGG 1 cut(s) 462
SinI GGWCC 2 cut(s) 463, 716
SlaI CTCGAG 1 cut(s) 220
SmiMI CAYNNNNRTG 1 cut(s) 851
SmlI CTYRAG 1 cut(s) 220
SmoI CTYRAG 1 cut(s) 220
SpeI ACTAGT 1 cut(s) 58
Sse9I AATT 7 cut(s) 6, 152, 490, 527, 635, 670, 814
SsiI CCGC 5 cut(s) 207, 384, 459, 461, 978
SspMI CTAG 2 cut(s) 59, 929
StyD4I CCNGG 2 cut(s) 428, 1011
TaaI ACNGT 2 cut(s) 290, 684
TaqI TCGA 5 cut(s) 66, 221, 522, 656, 803
TasI AATT 7 cut(s) 6, 152, 490, 527, 635, 670, 814
TauI GCSGC 2 cut(s) 209, 387
TfiI GAWTC 2 cut(s) 271, 653
Tru1I TTAA 4 cut(s) 282, 486, 740, 834
Tru9I TTAA 4 cut(s) 282, 486, 740, 834
TscAI CASTG 1 cut(s) 386
TseFI GTSAC 1 cut(s) 842
TseI GCWGC 1 cut(s) 1116
Tsp45I GTSAC 1 cut(s) 842
TspDTI ATGAA 4 cut(s) 32, 100, 227, 841
TspRI CASTG 1 cut(s) 386
Van91I CCANNNNNTGG 1 cut(s) 316
VpaK11BI GGWCC 2 cut(s) 463, 716
XapI RAATTY 3 cut(s) 527, 635, 814
XcmI CCANNNNNNNNNTGG 1 cut(s) 583
XhoI CTCGAG 1 cut(s) 220
XspI CTAG 2 cut(s) 59, 929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.