Prupe.2G316900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0016927
Physical Location & Seq
Forward (+)
29695188 .. 29697307
2120 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G316900.1

Sequence Viewer

Length: 966 bp
ATGTTCTTCATTCCCAGAATACCATTCCTAGACTCCGCCTTAGACCTTGCCACCCTGCTCTTCATCTCCGCCCTCATCATCCTCTCCCTCCTCTCCCTCTGCTTCATCTTCCACCTCTGCTTCAAGTCCCGCACCGCTCTCCATCTCCAACACTTCAACTCCCTCTGGACCGTCCGATTCCTCCTCGTCCTCTTCGTCATCTTCTGGTCCCTCAACGAGCTCCTCCGTATCCCCACCCTCCGCCGCACCTACCTCTACCCTTTCTTCTCCACCCTCGCCCCCTTCGAGGAGCCCCACTTCTGCAAAATCCATGTGGCTCTCTCCCTGGGGTTTTTCGAGCCCGCCTTCTTGGTCACCCTCCTCTTCCTCGTCGACGTCTCCATCGAGAAAAAGACCCCCAATGCCTTCTGGGCCATTGCCTTCGTCCTCGCCACCTGTCTCCCCATGGCTCTGGTCCAAGTTATCTTCTTGTTCTTCAACCCCTTTCAGAAGCTCCGCCTCCCCGTGCCCGACTTTTTCGTGCGGAGCTATGTCGTCAGCAAGAGCGAGTTGGGGATCAGCATGGTGTCCTGCGCGTACCCTTTGTTGAACACCATCATGTTCGGTTCGTTTGGGGCTGCGTACTCGCTCTGGTTTTTGTTTTCGTGCTGGAAGGTTTTGTCTTTGGTGATCAACAAAGGGCTGAGGACGCGCATTTACACCCTGGCAGCCACGGTACTGGTGCCGTTGCCGCTGCAGATCATTTTCATGGGGCTGAGCAATTTTTGGAAGCCGGACCACCCGGCCTTCGCCGCAGTCTCCTTCGTTGCGTTTCTCGCCACGCTCACATGCGCCGCGGTGGGGGAGGGCATTTTGGTCATTAAACCCATCGGTGACTCCTTGGCGGCCGGAGGAGATGCTTGCCGGTGGAATAGGGAGAAAAAACCGGCGGAGGTCGCGGATAGTGGAGATAAGTGTGCCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

322

Amino Acids

36.09

Weight (kDa)

8.97

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016927)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g32590
malus_domestica MD01G1227000.v1.1 MD07G1297300.v1.1
prunus_persica Prupe.2G316900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0382461
rosa_laevigata RLG00000026178
rosa_multiflora Rmu_sc0000110.1_g000049 Rmu_sc0000110.1_g000050 Rmu_sc0003885.1_g000010
rosa_roxburghii Rroxscaffold_4G00278090
rosa_rugosa Rorug01G0434500
rosa_samantha Rh1CG429600 Rh1DG447700
rosa_wichuraiana Rw1G041190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 378
AccB1I GGYRCC 1 cut(s) 721
AccBSI CCGCTC 1 cut(s) 137
AccI GTMKAC 1 cut(s) 372
AccII CGCG 4 cut(s) 575, 691, 836, 938
AclWI GGATC 1 cut(s) 563
AcoI YGGCCR 1 cut(s) 885
AcyI GRCGYC 1 cut(s) 375
AfaI GTAC 3 cut(s) 578, 623, 717
AfiI CCNNNNNNNGG 2 cut(s) 286, 840
AgsI TTSAA 4 cut(s) 124, 157, 478, 589
AjnI CCWGG 2 cut(s) 324, 702
AluBI AGCT 3 cut(s) 220, 493, 528
AluI AGCT 3 cut(s) 220, 493, 528
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 3 cut(s) 382, 443, 802
AlwI GGATC 1 cut(s) 563
AoxI GGCC 3 cut(s) 411, 783, 885
ApeKI GCWGC 3 cut(s) 617, 707, 733
AspLEI GCGC 3 cut(s) 575, 693, 833
AspS9I GGNCC 5 cut(s) 168, 207, 411, 454, 775
AsuC2I CCSGG 1 cut(s) 782
AsuHPI GGTGA 3 cut(s) 346, 679, 884
AvaII GGWCC 4 cut(s) 168, 207, 454, 775
BaeGI GKGCMC 1 cut(s) 510
BanI GGYRCC 1 cut(s) 721
BanII GRGCYC 3 cut(s) 222, 294, 342
Bbv12I GWGCWC 1 cut(s) 222
BbvCI CCTCAGC 1 cut(s) 683
BbvI GCAGC 3 cut(s) 604, 719, 720
BccI CCATC 4 cut(s) 150, 389, 602, 875
BceAI ACGGC 2 cut(s) 709, 944
BciT130I CCWGG 2 cut(s) 326, 704
BciVI GTATCC 1 cut(s) 239
BclI TGATCA 1 cut(s) 669
BcnI CCSGG 1 cut(s) 782
BcoDI GTCTC 3 cut(s) 382, 443, 802
BfaI CTAG 1 cut(s) 29
BfmI CTRYAG 1 cut(s) 734
BfuI GTATCC 1 cut(s) 239
BglI GCCNNNNNGGC 1 cut(s) 410
BisI GCNGC 8 cut(s) 244, 618, 708, 731, 734, 792, 834, 885
BlpI GCTNAGC 1 cut(s) 755
BlsI GCNGC 8 cut(s) 245, 619, 709, 732, 735, 793, 835, 886
Bme1390I CCNGG 3 cut(s) 326, 704, 782
Bme18I GGWCC 4 cut(s) 168, 207, 454, 775
BmgT120I GGNCC 5 cut(s) 168, 207, 411, 454, 775
BmiI GGNNCC 3 cut(s) 209, 291, 723
BmrFI CCNGG 3 cut(s) 326, 704, 782
BmsI GCATC 1 cut(s) 886
Bpu10I CCTNAGC 1 cut(s) 683
Bpu1102I GCTNAGC 1 cut(s) 755
BpuMI CCSGG 1 cut(s) 782
BsaHI GRCGYC 1 cut(s) 375
BsaJI CCNNGG 7 cut(s) 324, 325, 444, 702, 711, 834, 879
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 840
Bse118I RCCGGY 2 cut(s) 903, 925
Bse1I ACTGG 1 cut(s) 723
Bse3DI GCAATG 1 cut(s) 414
BseBI CCWGG 2 cut(s) 326, 704
BseDI CCNNGG 7 cut(s) 324, 325, 444, 702, 711, 834, 879
BseGI GGATG 1 cut(s) 78
BseLI CCNNNNNNNGG 2 cut(s) 286, 840
BseMI GCAATG 1 cut(s) 414
BseMII CTCAG 2 cut(s) 674, 746
BseNI ACTGG 1 cut(s) 723
BseRI GAGGAG 6 cut(s) 80, 173, 212, 302, 350, 906
BseSI GKGCMC 1 cut(s) 510
BseX3I CGGCCG 1 cut(s) 885
BseXI GCAGC 3 cut(s) 604, 719, 720
Bsh1236I CGCG 4 cut(s) 575, 691, 836, 938
Bsh1285I CGRYCG 1 cut(s) 888
BshFI GGCC 3 cut(s) 413, 785, 887
BshNI GGYRCC 1 cut(s) 721
BsiEI CGRYCG 1 cut(s) 888
BsiHKAI GWGCWC 1 cut(s) 222
BsiSI CCGG 5 cut(s) 773, 782, 888, 904, 926
BslFI GGGAC 2 cut(s) 112, 193
BslI CCNNNNNNNGG 2 cut(s) 286, 840
BsmAI GTCTC 3 cut(s) 382, 443, 802
BsmBI CGTCTC 1 cut(s) 382
BsmFI GGGAC 2 cut(s) 112, 193
BsnI GGCC 3 cut(s) 413, 785, 887
Bsp1286I GDGCHC 4 cut(s) 222, 294, 342, 510
Bsp143I GATC 3 cut(s) 555, 669, 738
Bsp1720I GCTNAGC 1 cut(s) 755
Bsp19I CCATGG 1 cut(s) 444
BspANI GGCC 3 cut(s) 413, 785, 887
BspCNI CTCAG 2 cut(s) 675, 747
BspFNI CGCG 4 cut(s) 575, 691, 836, 938
BspLI GGNNCC 3 cut(s) 209, 291, 723
BspMAI CTGCAG 1 cut(s) 738
BspPI GGATC 1 cut(s) 563
BspQI GCTCTTC 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 721
BsrBI CCGCTC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 414
BsrFI RCCGGY 2 cut(s) 903, 925
BsrI ACTGG 1 cut(s) 723
BssAI RCCGGY 2 cut(s) 903, 925
BssECI CCNNGG 7 cut(s) 324, 325, 444, 702, 711, 834, 879
BssMI GATC 3 cut(s) 555, 669, 738
BssNI GRCGYC 1 cut(s) 375
BssT1I CCWWGG 2 cut(s) 444, 879
Bst2UI CCWGG 2 cut(s) 326, 704
Bst4CI ACNGT 2 cut(s) 172, 715
Bst6I CTCTTC 3 cut(s) 65, 197, 368
BstACI GRCGYC 1 cut(s) 375
BstC8I GCNNGC 2 cut(s) 342, 901
BstDEI CTNAG 3 cut(s) 40, 683, 755
BstDSI CCRYGG 3 cut(s) 444, 711, 834
BstEII GGTNACC 1 cut(s) 352
BstF5I GGATG 1 cut(s) 78
BstFNI CGCG 4 cut(s) 575, 691, 836, 938
BstHHI GCGC 3 cut(s) 575, 693, 833
BstKTI GATC 3 cut(s) 558, 672, 741
BstMAI GTCTC 3 cut(s) 382, 443, 802
BstMBI GATC 3 cut(s) 555, 669, 738
BstMCI CGRYCG 1 cut(s) 888
BstMWI GCNNNNNNNGC 6 cut(s) 410, 688, 730, 791, 815, 935
BstNI CCWGG 2 cut(s) 326, 704
BstNSI RCATGY 1 cut(s) 831
BstPI GGTNACC 1 cut(s) 352
BstSCI CCNGG 3 cut(s) 324, 702, 780
BstSFI CTRYAG 1 cut(s) 734
BstSLI GKGCMC 1 cut(s) 510
BstUI CGCG 4 cut(s) 575, 691, 836, 938
BstV1I GCAGC 3 cut(s) 604, 719, 720
BstXI CCANNNNNNTGG 2 cut(s) 451, 718
BstZI CGGCCG 1 cut(s) 885
BsuI GTATCC 1 cut(s) 239
BsuRI GGCC 3 cut(s) 413, 785, 887
BtgI CCRYGG 3 cut(s) 444, 711, 834
BtsCI GGATG 1 cut(s) 78
Cac8I GCNNGC 2 cut(s) 342, 901
CfoI GCGC 3 cut(s) 575, 693, 833
Cfr10I RCCGGY 2 cut(s) 903, 925
Cfr13I GGNCC 5 cut(s) 168, 207, 411, 454, 775
Cfr42I CCGCGG 1 cut(s) 837
CseI GACGC 1 cut(s) 697
Csp6I GTAC 3 cut(s) 577, 622, 716
CviAII CATG 6 cut(s) 311, 445, 562, 598, 748, 828
CviQI GTAC 3 cut(s) 577, 622, 716
DdeI CTNAG 3 cut(s) 40, 683, 755
DpnI GATC 3 cut(s) 557, 671, 740
DpnII GATC 3 cut(s) 555, 669, 738
EaeI YGGCCR 1 cut(s) 885
EagI CGGCCG 1 cut(s) 885
Eam1104I CTCTTC 3 cut(s) 65, 197, 368
EarI CTCTTC 3 cut(s) 65, 197, 368
EciI GGCGGA 5 cut(s) 25, 58, 230, 485, 944
Ecl136II GAGCTC 1 cut(s) 220
EclXI CGGCCG 1 cut(s) 885
Eco130I CCWWGG 2 cut(s) 444, 879
Eco24I GRGCYC 3 cut(s) 222, 294, 342
Eco47I GGWCC 4 cut(s) 168, 207, 454, 775
Eco52I CGGCCG 1 cut(s) 885
Eco53kI GAGCTC 1 cut(s) 220
Eco91I GGTNACC 1 cut(s) 352
EcoICRI GAGCTC 1 cut(s) 220
EcoO65I GGTNACC 1 cut(s) 352
EcoRII CCWGG 2 cut(s) 324, 702
EcoT14I CCWWGG 2 cut(s) 444, 879
EcoT38I GRGCYC 3 cut(s) 222, 294, 342
ErhI CCWWGG 2 cut(s) 444, 879
Esp3I CGTCTC 1 cut(s) 382
FaeI CATG 6 cut(s) 314, 448, 565, 601, 751, 831
FaiI YATR 7 cut(s) 312, 446, 531, 563, 599, 749, 829
FaqI GGGAC 2 cut(s) 112, 193
FatI CATG 6 cut(s) 310, 444, 561, 597, 747, 827
FauI CCCGC 2 cut(s) 137, 349
FbaI TGATCA 1 cut(s) 669
FblI GTMKAC 1 cut(s) 372
Fnu4HI GCNGC 8 cut(s) 244, 618, 708, 731, 734, 792, 834, 885
FokI GGATG 1 cut(s) 65
FriOI GRGCYC 3 cut(s) 222, 294, 342
Fsp4HI GCNGC 8 cut(s) 244, 618, 708, 731, 734, 792, 834, 885
FspBI CTAG 1 cut(s) 29
GlaI GCGC 3 cut(s) 574, 692, 832
GluI GCNGC 8 cut(s) 244, 618, 708, 731, 734, 792, 834, 885
HaeIII GGCC 3 cut(s) 413, 785, 887
HapII CCGG 5 cut(s) 773, 782, 888, 904, 926
HgaI GACGC 1 cut(s) 697
HhaI GCGC 3 cut(s) 575, 693, 833
Hin1I GRCGYC 1 cut(s) 375
Hin1II CATG 6 cut(s) 314, 448, 565, 601, 751, 831
Hin6I GCGC 3 cut(s) 573, 691, 831
HinP1I GCGC 3 cut(s) 573, 691, 831
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HinfI GANTC 3 cut(s) 32, 177, 875
HpaII CCGG 5 cut(s) 773, 782, 888, 904, 926
HphI GGTGA 3 cut(s) 346, 679, 884
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 3 cut(s) 176, 489, 965
Hpy188III TCNNGA 2 cut(s) 166, 385
Hpy8I GTNNAC 1 cut(s) 373
Hpy99I CGWCG 2 cut(s) 374, 377
HpyAV CCTTC 7 cut(s) 292, 355, 415, 430, 646, 796, 811
HpyCH4III ACNGT 2 cut(s) 172, 715
HpyCH4IV ACGT 1 cut(s) 375
HpyCH4V TGCA 2 cut(s) 303, 736
HpyF10VI GCNNNNNNNGC 6 cut(s) 410, 688, 730, 791, 815, 935
HpyF3I CTNAG 3 cut(s) 40, 683, 755
HpySE526I ACGT 1 cut(s) 375
Hsp92I GRCGYC 1 cut(s) 375
Hsp92II CATG 6 cut(s) 314, 448, 565, 601, 751, 831
HspAI GCGC 3 cut(s) 573, 691, 831
Ksp22I TGATCA 1 cut(s) 669
KspI CCGCGG 1 cut(s) 837
Kzo9I GATC 3 cut(s) 555, 669, 738
LguI GCTCTTC 1 cut(s) 65
LmnI GCTCC 4 cut(s) 225, 289, 498, 525
Lsp1109I GCAGC 3 cut(s) 604, 719, 720
LweI GCATC 1 cut(s) 886
MaeI CTAG 1 cut(s) 29
MaeII ACGT 1 cut(s) 375
MaeIII GTNAC 2 cut(s) 352, 872
MalI GATC 3 cut(s) 557, 671, 740
MbiI CCGCTC 1 cut(s) 137
MboI GATC 3 cut(s) 555, 669, 738
MboII GAAGA 8 cut(s) 52, 100, 184, 193, 256, 355, 457, 466
MhlI GDGCHC 4 cut(s) 222, 294, 342, 510
MluCI AATT 1 cut(s) 760
MlyI GAGTC 2 cut(s) 26, 869
MmeI TCCRAC 1 cut(s) 172
MseI TTAA 1 cut(s) 861
MslI CAYNNNNRTG 2 cut(s) 596, 746
MspA1I CMGCKG 2 cut(s) 733, 836
MspI CCGG 5 cut(s) 773, 782, 888, 904, 926
MspR9I CCNGG 3 cut(s) 326, 704, 782
MvaI CCWGG 2 cut(s) 326, 704
MvnI CGCG 4 cut(s) 575, 691, 836, 938
MwoI GCNNNNNNNGC 6 cut(s) 410, 688, 730, 791, 815, 935
NciI CCSGG 1 cut(s) 782
NcoI CCATGG 1 cut(s) 444
NdeII GATC 3 cut(s) 555, 669, 738
NlaIII CATG 6 cut(s) 314, 448, 565, 601, 751, 831
NlaIV GGNNCC 3 cut(s) 209, 291, 723
NmuCI GTSAC 2 cut(s) 352, 872
NspI RCATGY 1 cut(s) 831
PasI CCCWGGG 1 cut(s) 325
PciSI GCTCTTC 1 cut(s) 65
PcsI WCGNNNNNNNCGW 3 cut(s) 192, 282, 381
PfeI GAWTC 1 cut(s) 177
PkrI GCNGC 8 cut(s) 245, 619, 709, 732, 735, 793, 835, 886
PleI GAGTC 2 cut(s) 26, 869
PpsI GAGTC 2 cut(s) 26, 869
Psp124BI GAGCTC 1 cut(s) 222
Psp6I CCWGG 2 cut(s) 324, 702
PspEI GGTNACC 1 cut(s) 352
PspGI CCWGG 2 cut(s) 324, 702
PspN4I GGNNCC 3 cut(s) 209, 291, 723
PspPI GGNCC 5 cut(s) 168, 207, 411, 454, 775
PstI CTGCAG 1 cut(s) 738
RsaI GTAC 3 cut(s) 578, 623, 717
RsaNI GTAC 3 cut(s) 577, 622, 716
RseI CAYNNNNRTG 2 cut(s) 596, 746
SacI GAGCTC 1 cut(s) 222
SacII CCGCGG 1 cut(s) 837
SalI GTCGAC 1 cut(s) 371
SapI GCTCTTC 1 cut(s) 65
SaqAI TTAA 1 cut(s) 861
SatI GCNGC 8 cut(s) 244, 618, 708, 731, 734, 792, 834, 885
Sau3AI GATC 3 cut(s) 555, 669, 738
Sau96I GGNCC 5 cut(s) 168, 207, 411, 454, 775
SchI GAGTC 2 cut(s) 26, 869
ScrFI CCNGG 3 cut(s) 326, 704, 782
SduI GDGCHC 4 cut(s) 222, 294, 342, 510
SfaNI GCATC 1 cut(s) 886
SfcI CTRYAG 1 cut(s) 734
Sfr303I CCGCGG 1 cut(s) 837
SgrBI CCGCGG 1 cut(s) 837
SgrDI CGTCGACG 1 cut(s) 371
SinI GGWCC 4 cut(s) 168, 207, 454, 775
SmiMI CAYNNNNRTG 2 cut(s) 596, 746
Sse9I AATT 1 cut(s) 760
SspMI CTAG 1 cut(s) 29
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 3 cut(s) 324, 702, 780
StyI CCWWGG 2 cut(s) 444, 879
TaaI ACNGT 2 cut(s) 172, 715
TaiI ACGT 1 cut(s) 378
TaqI TCGA 4 cut(s) 285, 336, 372, 384
TasI AATT 1 cut(s) 760
TauI GCSGC 5 cut(s) 246, 733, 794, 836, 887
TfiI GAWTC 1 cut(s) 177
Tru1I TTAA 1 cut(s) 861
Tru9I TTAA 1 cut(s) 861
TseFI GTSAC 2 cut(s) 352, 872
TseI GCWGC 3 cut(s) 617, 707, 733
Tsp45I GTSAC 2 cut(s) 352, 872
TspDTI ATGAA 3 cut(s) 52, 94, 736
TspGWI ACGGA 1 cut(s) 215
VpaK11BI GGWCC 4 cut(s) 168, 207, 454, 775
XceI RCATGY 1 cut(s) 831
XmiI GTMKAC 1 cut(s) 372
XspI CTAG 1 cut(s) 29
ZraI GACGTC 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.