MD07G1297300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0016927
Physical Location & Seq
Forward (+)
35720236 .. 35721198
963 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1297300.v1.1.491

Sequence Viewer

Length: 963 bp
ATGTTCTTCATTCCTTCGACGCCATTCCTCGACTCCGCCTTCGACGTTGCCACCTTACTATTCATCTCCGCCCTCATCGTCCTCTCCCTCCTCTCTCTCTCCTTCATCTTCCACCTCTGCTTCAAGTCCCGCACAGCCCTCCACCTCCAGCACTTCAACGCCCTCTGGACCGTCCGATTCCTCCTTGTCATATTCATCATCTTCTGGTCCCTCAACGAGCTCCTCCGCATCCCCACCCTCCGCCGCACCTACCTATACCCTTTCCTCTCCGTCCTCGGCTCCTTCGAGGAGCCGCAGTTTTGCAAAATTCACGTGGCCCTTTCGTTAGGGTTCTTCGAGCCCGCGTTCCTCGTCACCCTCCTCTTCCTCGTCGACGTCTCCACTGAAAAGAAGACCCCCAATGTCTCCTGGGCCATCGCCTTCGTCCTCGCCACGTGTCTTCCCATGCTTCTGGTGCAGGTCCTCTTCCTGTTCTTCCTCCCCTTCCACAAGCTCCACCTCCCGCTGCCGGAGATTTTGGTACGGAACTATGTCGTCCATAAGGTCGAGTACGGCGGCAGAATGGTTTCATGCACATACCCTTTGTTGAACACCATCATGTTCGCCGCATTCGGCGGCGCGTTCTCGATGTGGTTCTTGTTTTCATGCTGGAAGGTTTTATCCTTGGTGATCAACAAGGGGCTGAGGTTAAGGATTTACACCCTTGCTGCAACCGTATTGGTGCCGCTTCCGCTGCAGATTATTCTCATGGGGATGACCGTGTTGTGGAAGCCGGACCACCCAGCGTTCATAGCCGTCTCATTTGCTGCATTTTTGTCGACGCTCATTTGTGCAGCCCTGGGGCAGGGAATTTTGGTCATTAAGCCCATCGTGGACTCTTTGGCTGCCGGAGGGGATTGCTGCCGCTGGAATGGGAAGCCAAAGACGACGGAGGGGGTGGAGATAGCTGTGTCGGCTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

321

Amino Acids

35.93

Weight (kDa)

8.92

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016927)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g32590
malus_domestica MD01G1227000.v1.1 MD07G1297300.v1.1
prunus_persica Prupe.2G316900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0382461
rosa_laevigata RLG00000026178
rosa_multiflora Rmu_sc0000110.1_g000049 Rmu_sc0000110.1_g000050 Rmu_sc0003885.1_g000010
rosa_roxburghii Rroxscaffold_4G00278090
rosa_rugosa Rorug01G0434500
rosa_samantha Rh1CG429600 Rh1DG447700
rosa_wichuraiana Rw1G041190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 378
Acc36I ACCTGC 1 cut(s) 448
AccB1I GGYRCC 1 cut(s) 721
AccI GTMKAC 2 cut(s) 372, 818
AccII CGCG 2 cut(s) 344, 620
AcsI RAATTY 2 cut(s) 306, 849
AcvI CACGTG 2 cut(s) 313, 435
AcyI GRCGYC 2 cut(s) 20, 375
AfaI GTAC 2 cut(s) 522, 551
AfiI CCNNNNNNNGG 3 cut(s) 508, 765, 844
AflIII ACRYGT 1 cut(s) 434
AgsI TTSAA 3 cut(s) 124, 157, 589
AjnI CCWGG 2 cut(s) 407, 837
AluBI AGCT 3 cut(s) 220, 493, 947
AluI AGCT 3 cut(s) 220, 493, 947
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 3 cut(s) 382, 409, 802
AoxI GGCC 2 cut(s) 315, 411
ApeKI GCWGC 7 cut(s) 505, 707, 733, 806, 833, 884, 900
ApoI RAATTY 2 cut(s) 306, 849
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
Asp700I GAANNNNTTC 1 cut(s) 565
AspLEI GCGC 1 cut(s) 620
AspS9I GGNCC 6 cut(s) 168, 207, 316, 411, 460, 775
AsuHPI GGTGA 2 cut(s) 346, 679
AvaII GGWCC 4 cut(s) 168, 207, 460, 775
BanI GGYRCC 1 cut(s) 721
BanII GRGCYC 2 cut(s) 222, 342
BbrPI CACGTG 2 cut(s) 313, 435
BbsI GAAGAC 2 cut(s) 398, 431
Bbv12I GWGCWC 1 cut(s) 222
BbvCI CCTCAGC 1 cut(s) 683
BbvI GCAGC 7 cut(s) 492, 694, 720, 793, 845, 871, 887
BccI CCATC 3 cut(s) 422, 602, 875
BceAI ACGGC 2 cut(s) 568, 779
BcgI CGANNNNNNTGC 2 cut(s) 798, 832
BciT130I CCWGG 2 cut(s) 409, 839
BclI TGATCA 1 cut(s) 669
BcoDI GTCTC 3 cut(s) 382, 409, 802
BfmI CTRYAG 1 cut(s) 734
BfuAI ACCTGC 1 cut(s) 448
Bme1390I CCNGG 2 cut(s) 409, 839
Bme18I GGWCC 4 cut(s) 168, 207, 460, 775
BmgT120I GGNCC 6 cut(s) 168, 207, 316, 411, 460, 775
BmiI GGNNCC 4 cut(s) 209, 280, 291, 723
BmrFI CCNGG 2 cut(s) 409, 839
BmsI GCATC 1 cut(s) 237
BpiI GAAGAC 2 cut(s) 398, 431
BpmI CTGGAG 1 cut(s) 131
Bpu10I CCTNAGC 1 cut(s) 683
BsaAI YACGTR 2 cut(s) 313, 435
BsaHI GRCGYC 2 cut(s) 20, 375
BsaJI CCNNGG 5 cut(s) 274, 408, 663, 837, 838
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bsc4I CCNNNNNNNGG 3 cut(s) 508, 765, 844
BseBI CCWGG 2 cut(s) 409, 839
BseDI CCNNGG 5 cut(s) 274, 408, 663, 837, 838
BseGI GGATG 2 cut(s) 228, 759
BseLI CCNNNNNNNGG 3 cut(s) 508, 765, 844
BseMII CTCAG 1 cut(s) 674
BseRI GAGGAG 4 cut(s) 80, 212, 302, 350
BseXI GCAGC 7 cut(s) 492, 694, 720, 793, 845, 871, 887
BseYI CCCAGC 1 cut(s) 781
BsgI GTGCAG 2 cut(s) 476, 852
Bsh1236I CGCG 2 cut(s) 344, 620
BshFI GGCC 2 cut(s) 317, 413
BshNI GGYRCC 1 cut(s) 721
BsiHKAI GWGCWC 1 cut(s) 222
BsiSI CCGG 3 cut(s) 509, 773, 888
BslFI GGGAC 2 cut(s) 112, 193
BslI CCNNNNNNNGG 3 cut(s) 508, 765, 844
BsmAI GTCTC 3 cut(s) 382, 409, 802
BsmBI CGTCTC 2 cut(s) 382, 802
BsmFI GGGAC 2 cut(s) 112, 193
BsmI GAATGC 1 cut(s) 608
BsnI GGCC 2 cut(s) 317, 413
Bsp1286I GDGCHC 2 cut(s) 222, 342
Bsp143I GATC 1 cut(s) 669
BspANI GGCC 2 cut(s) 317, 413
BspCNI CTCAG 1 cut(s) 675
BspFNI CGCG 2 cut(s) 344, 620
BspLI GGNNCC 4 cut(s) 209, 280, 291, 723
BspMAI CTGCAG 1 cut(s) 738
BspMI ACCTGC 1 cut(s) 448
BspT107I GGYRCC 1 cut(s) 721
BssECI CCNNGG 5 cut(s) 274, 408, 663, 837, 838
BssMI GATC 1 cut(s) 669
BssNI GRCGYC 2 cut(s) 20, 375
BssT1I CCWWGG 1 cut(s) 663
Bst2UI CCWGG 2 cut(s) 409, 839
Bst4CI ACNGT 3 cut(s) 172, 715, 760
Bst6I CTCTTC 2 cut(s) 368, 470
BstACI GRCGYC 2 cut(s) 20, 375
BstBAI YACGTR 2 cut(s) 313, 435
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 1 cut(s) 683
BstENI CCTNNNNNAGG 1 cut(s) 842
BstF5I GGATG 2 cut(s) 228, 759
BstFNI CGCG 2 cut(s) 344, 620
BstHHI GCGC 1 cut(s) 620
BstKTI GATC 1 cut(s) 672
BstMAI GTCTC 3 cut(s) 382, 409, 802
BstMBI GATC 1 cut(s) 669
BstMWI GCNNNNNNNGC 5 cut(s) 454, 730, 733, 791, 953
BstNI CCWGG 2 cut(s) 409, 839
BstSCI CCNGG 2 cut(s) 407, 837
BstSFI CTRYAG 1 cut(s) 734
BstUI CGCG 2 cut(s) 344, 620
BstV1I GCAGC 7 cut(s) 492, 694, 720, 793, 845, 871, 887
BstV2I GAAGAC 2 cut(s) 398, 431
BstXI CCANNNNNNTGG 1 cut(s) 451
BsuRI GGCC 2 cut(s) 317, 413
BtgZI GCGATG 1 cut(s) 400
BtsCI GGATG 2 cut(s) 228, 759
BtsIMutI CAGTG 1 cut(s) 381
BveI ACCTGC 1 cut(s) 448
Cac8I GCNNGC 1 cut(s) 342
CfoI GCGC 1 cut(s) 620
Cfr13I GGNCC 6 cut(s) 168, 207, 316, 411, 460, 775
CseI GACGC 2 cut(s) 28, 829
Csp6I GTAC 2 cut(s) 521, 550
CviAII CATG 5 cut(s) 445, 570, 598, 645, 748
CviQI GTAC 2 cut(s) 521, 550
DdeI CTNAG 1 cut(s) 683
DpnI GATC 1 cut(s) 671
DpnII GATC 1 cut(s) 669
Eam1104I CTCTTC 2 cut(s) 368, 470
EarI CTCTTC 2 cut(s) 368, 470
EciI GGCGGA 3 cut(s) 25, 58, 230
Ecl136II GAGCTC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 663
Eco24I GRGCYC 2 cut(s) 222, 342
Eco47I GGWCC 4 cut(s) 168, 207, 460, 775
Eco53kI GAGCTC 1 cut(s) 220
Eco72I CACGTG 2 cut(s) 313, 435
EcoICRI GAGCTC 1 cut(s) 220
EcoNI CCTNNNNNAGG 1 cut(s) 842
EcoO109I RGGNCCY 1 cut(s) 460
EcoRII CCWGG 2 cut(s) 407, 837
EcoT14I CCWWGG 1 cut(s) 663
EcoT38I GRGCYC 2 cut(s) 222, 342
ErhI CCWWGG 1 cut(s) 663
Esp3I CGTCTC 2 cut(s) 382, 802
FaeI CATG 5 cut(s) 448, 573, 601, 648, 751
FaqI GGGAC 2 cut(s) 112, 193
FatI CATG 5 cut(s) 444, 569, 597, 644, 747
FauI CCCGC 3 cut(s) 137, 349, 510
FbaI TGATCA 1 cut(s) 669
FblI GTMKAC 2 cut(s) 372, 818
FokI GGATG 2 cut(s) 215, 766
FriOI GRGCYC 2 cut(s) 222, 342
GlaI GCGC 1 cut(s) 619
GsaI CCCAGC 1 cut(s) 785
GsuI CTGGAG 1 cut(s) 131
HaeIII GGCC 2 cut(s) 317, 413
HapII CCGG 3 cut(s) 509, 773, 888
HgaI GACGC 2 cut(s) 28, 829
HhaI GCGC 1 cut(s) 620
Hin1I GRCGYC 2 cut(s) 20, 375
Hin1II CATG 5 cut(s) 448, 573, 601, 648, 751
Hin6I GCGC 1 cut(s) 618
HinP1I GCGC 1 cut(s) 618
HincII GTYRAC 2 cut(s) 373, 819
HindII GTYRAC 2 cut(s) 373, 819
HinfI GANTC 3 cut(s) 32, 177, 875
HpaII CCGG 3 cut(s) 509, 773, 888
HphI GGTGA 2 cut(s) 346, 679
Hpy166II GTNNAC 3 cut(s) 373, 819, 874
Hpy188I TCNGA 1 cut(s) 176
Hpy188III TCNNGA 2 cut(s) 166, 625
Hpy8I GTNNAC 3 cut(s) 373, 819, 874
Hpy99I CGWCG 6 cut(s) 22, 47, 374, 377, 823, 931
HpyAV CCTTC 7 cut(s) 24, 49, 112, 292, 430, 493, 646
HpyCH4III ACNGT 3 cut(s) 172, 715, 760
HpyCH4IV ACGT 4 cut(s) 45, 312, 375, 434
HpyCH4V TGCA 7 cut(s) 303, 457, 573, 710, 736, 809, 833
HpyF10VI GCNNNNNNNGC 5 cut(s) 454, 730, 733, 791, 953
HpyF3I CTNAG 1 cut(s) 683
HpySE526I ACGT 4 cut(s) 45, 312, 375, 434
Hsp92I GRCGYC 2 cut(s) 20, 375
Hsp92II CATG 5 cut(s) 448, 573, 601, 648, 751
HspAI GCGC 1 cut(s) 618
Ksp22I TGATCA 1 cut(s) 669
Kzo9I GATC 1 cut(s) 669
LmnI GCTCC 4 cut(s) 225, 284, 289, 498
Lsp1109I GCAGC 7 cut(s) 492, 694, 720, 793, 845, 871, 887
LweI GCATC 1 cut(s) 237
MaeII ACGT 4 cut(s) 45, 312, 375, 434
MaeIII GTNAC 1 cut(s) 352
MalI GATC 1 cut(s) 671
MboI GATC 1 cut(s) 669
MboII GAAGA 8 cut(s) 100, 193, 325, 355, 403, 431, 457, 466
MhlI GDGCHC 2 cut(s) 222, 342
MluCI AATT 2 cut(s) 306, 849
MlyI GAGTC 2 cut(s) 26, 869
MroXI GAANNNNTTC 1 cut(s) 565
MseI TTAA 3 cut(s) 689, 861, 961
MslI CAYNNNNRTG 2 cut(s) 596, 752
MspA1I CMGCKG 3 cut(s) 505, 733, 906
MspI CCGG 3 cut(s) 509, 773, 888
MspR9I CCNGG 2 cut(s) 409, 839
Mva1269I GAATGC 1 cut(s) 608
MvaI CCWGG 2 cut(s) 409, 839
MvnI CGCG 2 cut(s) 344, 620
MwoI GCNNNNNNNGC 5 cut(s) 454, 730, 733, 791, 953
NdeII GATC 1 cut(s) 669
NlaIII CATG 5 cut(s) 448, 573, 601, 648, 751
NlaIV GGNNCC 4 cut(s) 209, 280, 291, 723
NmeAIII GCCGAG 1 cut(s) 255
NmuCI GTSAC 1 cut(s) 352
PasI CCCWGGG 1 cut(s) 838
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PctI GAATGC 1 cut(s) 608
PdmI GAANNNNTTC 1 cut(s) 565
PfeI GAWTC 1 cut(s) 177
PleI GAGTC 2 cut(s) 26, 869
PmaCI CACGTG 2 cut(s) 313, 435
PmlI CACGTG 2 cut(s) 313, 435
PpsI GAGTC 2 cut(s) 26, 869
Ppu21I YACGTR 2 cut(s) 313, 435
PpuMI RGGWCCY 1 cut(s) 460
Psp124BI GAGCTC 1 cut(s) 222
Psp5II RGGWCCY 1 cut(s) 460
Psp6I CCWGG 2 cut(s) 407, 837
PspCI CACGTG 2 cut(s) 313, 435
PspFI CCCAGC 1 cut(s) 781
PspGI CCWGG 2 cut(s) 407, 837
PspN4I GGNNCC 4 cut(s) 209, 280, 291, 723
PspPI GGNCC 6 cut(s) 168, 207, 316, 411, 460, 775
PspPPI RGGWCCY 1 cut(s) 460
PstI CTGCAG 1 cut(s) 738
RsaI GTAC 2 cut(s) 522, 551
RsaNI GTAC 2 cut(s) 521, 550
RseI CAYNNNNRTG 2 cut(s) 596, 752
SacI GAGCTC 1 cut(s) 222
SalI GTCGAC 2 cut(s) 371, 817
SaqAI TTAA 3 cut(s) 689, 861, 961
Sau3AI GATC 1 cut(s) 669
Sau96I GGNCC 6 cut(s) 168, 207, 316, 411, 460, 775
SchI GAGTC 2 cut(s) 26, 869
ScrFI CCNGG 2 cut(s) 409, 839
SduI GDGCHC 2 cut(s) 222, 342
SfaNI GCATC 1 cut(s) 237
SfcI CTRYAG 1 cut(s) 734
SgrDI CGTCGACG 1 cut(s) 371
SinI GGWCC 4 cut(s) 168, 207, 460, 775
SmiMI CAYNNNNRTG 2 cut(s) 596, 752
Sse9I AATT 2 cut(s) 306, 849
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 2 cut(s) 407, 837
StyI CCWWGG 1 cut(s) 663
TaaI ACNGT 3 cut(s) 172, 715, 760
TaiI ACGT 4 cut(s) 48, 315, 378, 437
TaqI TCGA 9 cut(s) 17, 30, 42, 285, 336, 372, 546, 626, 818
TasI AATT 2 cut(s) 306, 849
TauI GCSGC 7 cut(s) 246, 295, 558, 608, 618, 727, 906
TfiI GAWTC 1 cut(s) 177
Tru1I TTAA 3 cut(s) 689, 861, 961
Tru9I TTAA 3 cut(s) 689, 861, 961
TscAI CASTG 1 cut(s) 388
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 7 cut(s) 505, 707, 733, 806, 833, 884, 900
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 6 cut(s) 52, 94, 184, 558, 633, 778
TspGWI ACGGA 3 cut(s) 259, 538, 944
TspRI CASTG 1 cut(s) 388
VpaK11BI GGWCC 4 cut(s) 168, 207, 460, 775
XagI CCTNNNNNAGG 1 cut(s) 842
XapI RAATTY 2 cut(s) 306, 849
XmiI GTMKAC 2 cut(s) 372, 818
XmnI GAANNNNTTC 1 cut(s) 565
ZraI GACGTC 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.