Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006419

Physical Location & Seq

Genomic Coordinates Reverse (-)

23635631 .. 23639169

Gene Structure 3539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g33100.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGAGATGGGGTTTCTGAGGAATTGGTTCAAATGGTCGCAGCTAGTTTTAGCTATGGTGGTGGTGCAGATGTTTGTAGCAGGGATGAACTTGCTTTCCAAAGTGATTCTGAGTGAGGGAAGCTTCATTTTTGCACTCATGGCATACCGGCATGTTGTTGCGGCTATATGTGTTGCTCCTTTTGCCCTTTGTTTCGAAAGGATCAAGGAACATAAGTTAGGTTGGTCAGTTTGGTTCTGGCTCTTTGTCAATGCCTTAACTGGGATAACCGCAGCAATGGCATTGTTTTACTATGGCCTCCGAGACACCACGGCTACATATGCTGCCAACTTCCTCAACTTAATTCCCATAGCCACCTTTGTCCTCTCTACCATCACAGGAACAGAGAAACTGAATCTGAAAATAAGAGCAGGGAAGATTAAGTGTCTAGGGGTGATAGTATGTGTTGGGGGAGCCATAACTACTAGCTTTTACAAGGGCAAAGCATTTTACTTGATTCATCATAGTAATAATCACCATCACATCACTGTCGATACAACATATGCTCATTGGACTCGCGGCACTGTCCTGCTCGTTTGTAGCTGCCTCTCCTATTCTACGTGGTTCATCGGGCAGGTTAAATTGCTCAAACTATTTCCACTGAAATATTGGGCAACAATGTTAATCTGCATCATGGCAGCCTTGCAATCAACAGTCATAGGCTTATGTTTAGACACAAGTACAGCTTCGTGGAGAATAGGGTGGGATCTGCAACTAGTTACTATACTTTATTCGGGAGCACTAGCAACAGCTGCAACATTCTGCTTACTTTCATGGGCAATCTCAGTCCAAGGACCTCTCTATCCTCCTATGTTCAATCCATTGTCTCTCATTTTTGTGGCAATATCAGGAGCTCTCATACTCGGTGAAGAGATTAGAATGGGAACCTTGCTGGGCATGTTTATGATCATAGTAGGGTTGTACTCATTTTTGATGGGTAAACGAAAGGAGACAAAAAGGGTGTCTTTGCCGGAACAAGTAAAAACAAATGCCGAACTCACAGGGTCTCAGTTGACAGCTGCAGTTGTGCCAACTACTTCACCAGATAACTGTCACATCTGCCCTGACATTGCTGTTGATGTTGATCATGAAGATGGTTTAAACAAAACCACAGTAAATCCTAGAGGGCTTGAGGCTAAGGAAATAACTATGCTTATGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

401

Amino Acids

44.27

Weight (kDa)

8.89

Isoelectric Point (pI)

25.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	94 - 230	2.7e-08	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006419)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100
malus_domestica	MD01G1230200.v1.1
prunus_persica	Prupe.2G320900_v2.0.a1 Prupe.2G320900_v2.0.a1 Prupe.2G320900_v2.0.a1 Prupe.2G320900_v2.0.a1 Prupe.2G320900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0383151
rosa_laevigata	RLG00000026126
rosa_multiflora	Rmu_sc0008563.1_g000007
rosa_roxburghii	Rroxscaffold_4G00277540
rosa_rugosa	Rorug01G0439200 Rorug01G0439200 Rorug01G0439200 Rorug01G0439200
rosa_samantha	Rh1AG464800 Rh1BG422100 Rh1CG435400 Rh1DG454800
rosa_wichuraiana	Rw1G040760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	604
AccII	CGCG	1 cut(s)	558
AciI	CCGC	3 cut(s)	161, 270, 558
AclWI	GGATC	2 cut(s)	209, 753
AfaI	GTAC	2 cut(s)	721, 962
AfiI	CCNNNNNNNGG	1 cut(s)	261
AgsI	TTSAA	2 cut(s)	31, 856
AhlI	ACTAGT	1 cut(s)	754
AloI	GAACNNNNNNTCC	2 cut(s)	80, 112
AluBI	AGCT	9 cut(s)	43, 53, 123, 468, 582, 725, 791, 893, 1058
AluI	AGCT	9 cut(s)	43, 53, 123, 468, 582, 725, 791, 893, 1058
Alw21I	GWGCWC	2 cut(s)	781, 895
Alw26I	GTCTC	4 cut(s)	297, 870, 983, 1050
AlwI	GGATC	2 cut(s)	209, 753
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	7 cut(s)	40, 272, 323, 582, 677, 791, 1058
ArsI	GACNNNNNNTTYG	2 cut(s)	986, 1018
Asp700I	GAANNNNTTC	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	833
AsuHPI	GGTGA	4 cut(s)	445, 506, 917, 1071
AsuII	TTCGAA	1 cut(s)	195
AvaII	GGWCC	1 cut(s)	833
BanII	GRGCYC	1 cut(s)	895
Bbv12I	GWGCWC	2 cut(s)	781, 895
BbvI	GCAGC	7 cut(s)	52, 284, 310, 569, 689, 778, 1045
BccI	CCATC	4 cut(s)	380, 525, 967, 1127
BceAI	ACGGC	1 cut(s)	327
BclI	TGATCA	2 cut(s)	945, 1123
BcoDI	GTCTC	4 cut(s)	297, 870, 983, 1050
BcuI	ACTAGT	1 cut(s)	754
BfaI	CTAG	6 cut(s)	44, 428, 465, 755, 782, 1161
BfmI	CTRYAG	1 cut(s)	1059
BfuAI	ACCTGC	1 cut(s)	604
BisI	GCNGC	9 cut(s)	41, 162, 273, 324, 559, 583, 678, 792, 1059
BlsI	GCNGC	9 cut(s)	42, 163, 274, 325, 560, 584, 679, 793, 1060
Bme18I	GGWCC	1 cut(s)	833
BmgT120I	GGNCC	1 cut(s)	833
BmiI	GGNNCC	2 cut(s)	454, 925
BmrI	ACTGGG	1 cut(s)	270
BmsI	GCATC	1 cut(s)	678
BmuI	ACTGGG	1 cut(s)	270
Bpu10I	CCTNAGC	1 cut(s)	1176
Bpu14I	TTCGAA	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	1190
BsaAI	YACGTR	1 cut(s)	600
BsaBI	GATNNNNATC	1 cut(s)	1122
BsaI	GGTCTC	1 cut(s)	1050
BsaJI	CCNNGG	2 cut(s)	309, 829
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	261
Bse118I	RCCGGY	1 cut(s)	147
Bse1I	ACTGG	1 cut(s)	265
Bse3DI	GCAATG	2 cut(s)	282, 1107
Bse8I	GATNNNNATC	1 cut(s)	1122
BseDI	CCNNGG	2 cut(s)	309, 829
BseGI	GGATG	1 cut(s)	90
BseJI	GATNNNNATC	1 cut(s)	1122
BseLI	CCNNNNNNNGG	1 cut(s)	261
BseMI	GCAATG	2 cut(s)	282, 1107
BseMII	CTCAG	4 cut(s)	8, 101, 837, 1061
BseNI	ACTGG	1 cut(s)	265
BseXI	GCAGC	7 cut(s)	52, 284, 310, 569, 689, 778, 1045
BseYI	CCCAGC	1 cut(s)	931
BsgI	GTGCAG	1 cut(s)	86
Bsh1236I	CGCG	1 cut(s)	558
BshFI	GGCC	1 cut(s)	297
BsiHKAI	GWGCWC	2 cut(s)	781, 895
BsiSI	CCGG	2 cut(s)	148, 1010
BslI	CCNNNNNNNGG	1 cut(s)	261
BsmAI	GTCTC	4 cut(s)	297, 870, 983, 1050
BsnI	GGCC	1 cut(s)	297
Bso31I	GGTCTC	1 cut(s)	1050
Bsp119I	TTCGAA	1 cut(s)	195
Bsp1286I	GDGCHC	2 cut(s)	781, 895
Bsp143I	GATC	4 cut(s)	201, 745, 945, 1123
BspACI	CCGC	3 cut(s)	161, 270, 558
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	4 cut(s)	9, 102, 836, 1060
BspFNI	CGCG	1 cut(s)	558
BspHI	TCATGA	1 cut(s)	1126
BspLI	GGNNCC	2 cut(s)	454, 925
BspMAI	CTGCAG	1 cut(s)	1063
BspMI	ACCTGC	1 cut(s)	604
BspPI	GGATC	2 cut(s)	209, 753
BspT104I	TTCGAA	1 cut(s)	195
BspTNI	GGTCTC	1 cut(s)	1050
BsrDI	GCAATG	2 cut(s)	282, 1107
BsrFI	RCCGGY	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	147
BssECI	CCNNGG	2 cut(s)	309, 829
BssMI	GATC	4 cut(s)	201, 745, 945, 1123
BssT1I	CCWWGG	1 cut(s)	829
Bst4CI	ACNGT	5 cut(s)	529, 565, 694, 1091, 1153
Bst6I	CTCTTC	1 cut(s)	903
BstAPI	GCANNNNNTGC	1 cut(s)	791
BstBAI	YACGTR	1 cut(s)	600
BstBI	TTCGAA	1 cut(s)	195
BstDEI	CTNAG	5 cut(s)	17, 110, 823, 1047, 1176
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	1 cut(s)	90
BstFNI	CGCG	1 cut(s)	558
BstKTI	GATC	4 cut(s)	204, 748, 948, 1126
BstMAI	GTCTC	4 cut(s)	297, 870, 983, 1050
BstMBI	GATC	4 cut(s)	201, 745, 945, 1123
BstMWI	GCNNNNNNNGC	5 cut(s)	140, 182, 278, 320, 791
BstNSI	RCATGY	2 cut(s)	155, 940
BstSFI	CTRYAG	1 cut(s)	1059
BstUI	CGCG	1 cut(s)	558
BstV1I	GCAGC	7 cut(s)	52, 284, 310, 569, 689, 778, 1045
BstX2I	RGATCY	1 cut(s)	745
BstYI	RGATCY	1 cut(s)	745
BsuRI	GGCC	1 cut(s)	297
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	90
BtsIMutI	CAGTG	3 cut(s)	525, 561, 638
BveI	ACCTGC	1 cut(s)	604
CciI	TCATGA	1 cut(s)	1126
Cfr10I	RCCGGY	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	833
Csp6I	GTAC	2 cut(s)	720, 961
CviAII	CATG	6 cut(s)	139, 152, 673, 813, 937, 1127
CviQI	GTAC	2 cut(s)	720, 961
DdeI	CTNAG	5 cut(s)	17, 110, 823, 1047, 1176
DpnI	GATC	4 cut(s)	203, 747, 947, 1125
DpnII	GATC	4 cut(s)	201, 745, 945, 1123
DraI	TTTAAA	1 cut(s)	1140
Eam1104I	CTCTTC	1 cut(s)	903
EarI	CTCTTC	1 cut(s)	903
Ecl136II	GAGCTC	1 cut(s)	893
Eco130I	CCWWGG	1 cut(s)	829
Eco24I	GRGCYC	1 cut(s)	895
Eco31I	GGTCTC	1 cut(s)	1050
Eco47I	GGWCC	1 cut(s)	833
Eco53kI	GAGCTC	1 cut(s)	893
EcoICRI	GAGCTC	1 cut(s)	893
EcoO109I	RGGNCCY	1 cut(s)	833
EcoT14I	CCWWGG	1 cut(s)	829
EcoT38I	GRGCYC	1 cut(s)	895
ErhI	CCWWGG	1 cut(s)	829
FaeI	CATG	6 cut(s)	142, 155, 676, 816, 940, 1130
FalI	AAGNNNNNCTT	4 cut(s)	709, 741, 988, 1020
FatI	CATG	6 cut(s)	138, 151, 672, 812, 936, 1126
FauNDI	CATATG	2 cut(s)	319, 541
FbaI	TGATCA	2 cut(s)	945, 1123
Fnu4HI	GCNGC	9 cut(s)	41, 162, 273, 324, 559, 583, 678, 792, 1059
FokI	GGATG	1 cut(s)	97
FriOI	GRGCYC	1 cut(s)	895
Fsp4HI	GCNGC	9 cut(s)	41, 162, 273, 324, 559, 583, 678, 792, 1059
FspBI	CTAG	6 cut(s)	44, 428, 465, 755, 782, 1161
GluI	GCNGC	9 cut(s)	41, 162, 273, 324, 559, 583, 678, 792, 1059
GsaI	CCCAGC	1 cut(s)	935
HaeIII	GGCC	1 cut(s)	297
HapII	CCGG	2 cut(s)	148, 1010
Hin1II	CATG	6 cut(s)	142, 155, 676, 816, 940, 1130
HincII	GTYRAC	1 cut(s)	1053
HindII	GTYRAC	1 cut(s)	1053
HindIII	AAGCTT	1 cut(s)	121
HinfI	GANTC	4 cut(s)	106, 394, 496, 553
HpaII	CCGG	2 cut(s)	148, 1010
HphI	GGTGA	4 cut(s)	445, 506, 917, 1071
Hpy166II	GTNNAC	2 cut(s)	980, 1053
Hpy188I	TCNGA	4 cut(s)	18, 111, 302, 399
Hpy188III	TCNNGA	3 cut(s)	774, 888, 1127
Hpy8I	GTNNAC	2 cut(s)	980, 1053
HpyCH4III	ACNGT	5 cut(s)	529, 565, 694, 1091, 1153
HpyCH4IV	ACGT	1 cut(s)	599
HpyCH4V	TGCA	7 cut(s)	67, 134, 669, 685, 751, 794, 1061
HpyF10VI	GCNNNNNNNGC	5 cut(s)	140, 182, 278, 320, 791
HpyF3I	CTNAG	5 cut(s)	17, 110, 823, 1047, 1176
HpySE526I	ACGT	1 cut(s)	599
Hsp92II	CATG	6 cut(s)	142, 155, 676, 816, 940, 1130
Ksp22I	TGATCA	2 cut(s)	945, 1123
Kzo9I	GATC	4 cut(s)	201, 745, 945, 1123
LmnI	GCTCC	4 cut(s)	181, 452, 776, 890
Lsp1109I	GCAGC	7 cut(s)	52, 284, 310, 569, 689, 778, 1045
LweI	GCATC	1 cut(s)	678
MaeI	CTAG	6 cut(s)	44, 428, 465, 755, 782, 1161
MaeII	ACGT	1 cut(s)	599
MaeIII	GTNAC	2 cut(s)	757, 1091
MalI	GATC	4 cut(s)	203, 747, 947, 1125
MboI	GATC	4 cut(s)	201, 745, 945, 1123
MboII	GAAGA	3 cut(s)	427, 920, 1142
MflI	RGATCY	1 cut(s)	745
MhlI	GDGCHC	2 cut(s)	781, 895
MluCI	AATT	3 cut(s)	22, 342, 620
MlyI	GAGTC	1 cut(s)	547
MroXI	GAANNNNTTC	1 cut(s)	26
MseI	TTAA	6 cut(s)	257, 341, 420, 618, 662, 1139
MslI	CAYNNNNRTG	3 cut(s)	875, 941, 1131
MspA1I	CMGCKG	2 cut(s)	791, 1058
MspI	CCGG	2 cut(s)	148, 1010
MssI	GTTTAAAC	1 cut(s)	1140
MvnI	CGCG	1 cut(s)	558
MwoI	GCNNNNNNNGC	5 cut(s)	140, 182, 278, 320, 791
NdeI	CATATG	2 cut(s)	319, 541
NdeII	GATC	4 cut(s)	201, 745, 945, 1123
NlaIII	CATG	6 cut(s)	142, 155, 676, 816, 940, 1130
NlaIV	GGNNCC	2 cut(s)	454, 925
NmuCI	GTSAC	1 cut(s)	1091
NspI	RCATGY	2 cut(s)	155, 940
NspV	TTCGAA	1 cut(s)	195
PagI	TCATGA	1 cut(s)	1126
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	3 cut(s)	106, 394, 496
PkrI	GCNGC	9 cut(s)	42, 163, 274, 325, 560, 584, 679, 793, 1060
PleI	GAGTC	1 cut(s)	547
PmeI	GTTTAAAC	1 cut(s)	1140
PpsI	GAGTC	1 cut(s)	547
Ppu21I	YACGTR	1 cut(s)	600
PpuMI	RGGWCCY	1 cut(s)	833
Psp124BI	GAGCTC	1 cut(s)	895
Psp5II	RGGWCCY	1 cut(s)	833
PspFI	CCCAGC	1 cut(s)	931
PspN4I	GGNNCC	2 cut(s)	454, 925
PspPI	GGNCC	1 cut(s)	833
PspPPI	RGGWCCY	1 cut(s)	833
PstI	CTGCAG	1 cut(s)	1063
PsuI	RGATCY	1 cut(s)	745
PvuII	CAGCTG	2 cut(s)	791, 1058
RsaI	GTAC	2 cut(s)	721, 962
RsaNI	GTAC	2 cut(s)	720, 961
RseI	CAYNNNNRTG	3 cut(s)	875, 941, 1131
SacI	GAGCTC	1 cut(s)	895
SaqAI	TTAA	6 cut(s)	257, 341, 420, 618, 662, 1139
SatI	GCNGC	9 cut(s)	41, 162, 273, 324, 559, 583, 678, 792, 1059
Sau3AI	GATC	4 cut(s)	201, 745, 945, 1123
Sau96I	GGNCC	1 cut(s)	833
SchI	GAGTC	1 cut(s)	547
SduI	GDGCHC	2 cut(s)	781, 895
SfaNI	GCATC	1 cut(s)	678
SfcI	CTRYAG	1 cut(s)	1059
SfuI	TTCGAA	1 cut(s)	195
SinI	GGWCC	1 cut(s)	833
SmiMI	CAYNNNNRTG	3 cut(s)	875, 941, 1131
SmlI	CTYRAG	1 cut(s)	1169
SmoI	CTYRAG	1 cut(s)	1169
SpeI	ACTAGT	1 cut(s)	754
Sse9I	AATT	3 cut(s)	22, 342, 620
SsiI	CCGC	3 cut(s)	161, 270, 558
SspI	AATATT	1 cut(s)	647
SspMI	CTAG	6 cut(s)	44, 428, 465, 755, 782, 1161
SstI	GAGCTC	1 cut(s)	895
StyI	CCWWGG	1 cut(s)	829
TaaI	ACNGT	5 cut(s)	529, 565, 694, 1091, 1153
TaiI	ACGT	1 cut(s)	602
TaqI	TCGA	2 cut(s)	195, 531
TasI	AATT	3 cut(s)	22, 342, 620
TatI	WGTACW	2 cut(s)	719, 960
TauI	GCSGC	2 cut(s)	164, 561
TfiI	GAWTC	3 cut(s)	106, 394, 496
Tru1I	TTAA	6 cut(s)	257, 341, 420, 618, 662, 1139
Tru9I	TTAA	6 cut(s)	257, 341, 420, 618, 662, 1139
TscAI	CASTG	3 cut(s)	532, 568, 645
TseFI	GTSAC	1 cut(s)	1091
TseI	GCWGC	7 cut(s)	40, 272, 323, 582, 677, 791, 1058
Tsp45I	GTSAC	1 cut(s)	1091
TspDTI	ATGAA	6 cut(s)	101, 115, 488, 595, 801, 1143
TspRI	CASTG	3 cut(s)	532, 568, 645
VpaK11BI	GGWCC	1 cut(s)	833
XceI	RCATGY	2 cut(s)	155, 940
XcmI	CCANNNNNNNNNTGG	1 cut(s)	645
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	6 cut(s)	44, 428, 465, 755, 782, 1161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.