Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006419

Physical Location & Seq

Genomic Coordinates Reverse (-)

29865799 .. 29868502

Gene Structure 2704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G320900.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGATATGGGTTTGTTGAAAAAATGGTTTAAGTGGTCAGAGTTGGTGCTGGCCATGGTGATGGTGCAGATATTTGTAACTGGGATGCAATTGCTTTCCAAAGTGATATTGCGTGAGGGAACCTTCATTTTTGCACTCATGGCCTACCGTCATATCGTTGCTGCCATTTGTGTTGCTCCTTTTGCCTTCTTTTTCGAAAGCAGTGTTAAACAAATCAAGTTGGGTTGGTCAGTTTGGTTCTGGCTCTTTGTCAATGCCTTAACAGGGATCACATCTGCGATGGGATTGTTTTACTATGGCCTCCGAGACACCACGCCTACATATGCTACAAACTTCCTCAACTTAATTCCGATAGCAACGTTTGTGCTCTCCATCATCACTAGCATAGATAAATTGAACCTGCAAACCAGAGCAGGCAAAGTCAAGACTTTTGGGGTAATTGTATGCGTTGGGGGGGCCCTCACTGCTAGCCTTTACAAGGGAAAGGCATTTCATATGCGCCAGCACAGCCATCACTCTCATATCACTGTCAACACAACTTATGCTCACTGGACACGTGGCACTATCATGTTGGCCGGTAGCTGCCTGTCCTGTTCTACATGGTTCATAGTGCAAGCTAAATTGCTCAAAATATTTCCATTCAAATATTGGGCAACAATGCTAACGTGCATTATGGCAACCCTGCAATCAACAGGCATAGGCCTATTTTTCGACAGACGGGCGGCTTCGTGGAGGTTAGGGTGGAATTTGCAGCTAGTTACGATAATTTATTCGGGAGCGCTAGCCACAGCTGCAACGTTCTGCTTAATTTCATGGGCCATCTCAGTCCAAGGACCTCTCTATCCTCCCATGTTCAACCCATTGTCTCTAATTTTTGTTGCCTTATCATCAGCTCTCATACTTGGCGAAGAGATTAGAATCGGAACTTTGCTGGGCATGATTCTGATCATGTTTGGATTGTACTCCTTCTTGTGGGGTAAAAGAAAGGAAATGAAAAGCCCAGATTTGCCAAAATCAGAAGCTCCGGTAGTAGCGAAAACAAATGGTGAGCTGCCCGCAGCGACAGGGTTGCAACTATCACCCGGGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

364

Amino Acids

40.29

Weight (kDa)

9.72

Isoelectric Point (pI)

30.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006419)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100
malus_domestica	MD01G1230200.v1.1
prunus_persica	Prupe.2G320900_v2.0.a1 Prupe.2G320900_v2.0.a1 Prupe.2G320900_v2.0.a1 Prupe.2G320900_v2.0.a1 Prupe.2G320900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0383151
rosa_laevigata	RLG00000026126
rosa_multiflora	Rmu_sc0008563.1_g000007
rosa_roxburghii	Rroxscaffold_4G00277540
rosa_rugosa	Rorug01G0439200 Rorug01G0439200 Rorug01G0439200 Rorug01G0439200
rosa_samantha	Rh1AG464800 Rh1BG422100 Rh1CG435400 Rh1DG454800
rosa_wichuraiana	Rw1G040760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	408
AciI	CCGC	2 cut(s)	722, 1056
AclI	AACGTT	2 cut(s)	359, 797
AclWI	GGATC	1 cut(s)	275
AcoI	YGGCCR	2 cut(s)	51, 573
AcsI	RAATTY	1 cut(s)	745
AcvI	CACGTG	1 cut(s)	557
AfaI	GTAC	1 cut(s)	962
AfeI	AGCGCT	1 cut(s)	780
AfiI	CCNNNNNNNGG	3 cut(s)	264, 478, 972
AflIII	ACRYGT	1 cut(s)	554
AgsI	TTSAA	4 cut(s)	19, 397, 643, 856
AleI	CACNNNNGTG	1 cut(s)	1084
AluBI	AGCT	7 cut(s)	582, 617, 754, 791, 893, 1022, 1051
AluI	AGCT	7 cut(s)	582, 617, 754, 791, 893, 1022, 1051
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	2 cut(s)	300, 870
AlwI	GGATC	1 cut(s)	275
Ama87I	CYCGRG	1 cut(s)	1082
Aor51HI	AGCGCT	1 cut(s)	780
AoxI	GGCC	7 cut(s)	51, 141, 298, 456, 573, 700, 816
ApaI	GGGCCC	1 cut(s)	460
ApeKI	GCWGC	6 cut(s)	161, 582, 751, 791, 1051, 1058
ApoI	RAATTY	1 cut(s)	745
AspLEI	GCGC	2 cut(s)	501, 781
AspS9I	GGNCC	4 cut(s)	456, 457, 816, 833
AsuC2I	CCSGG	2 cut(s)	1083, 1084
AsuHPI	GGTGA	3 cut(s)	70, 1058, 1071
AsuII	TTCGAA	1 cut(s)	195
AsuNHI	GCTAGC	2 cut(s)	467, 781
AvaI	CYCGRG	1 cut(s)	1082
AvaII	GGWCC	1 cut(s)	833
BaeGI	GKGCMC	1 cut(s)	460
BalI	TGGCCA	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	460
BbrPI	CACGTG	1 cut(s)	557
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	6 cut(s)	148, 569, 763, 778, 1038, 1070
BccI	CCATC	5 cut(s)	55, 274, 380, 519, 827
BcgI	CGANNNNNNTGC	2 cut(s)	1051, 1085
BclI	TGATCA	1 cut(s)	945
BcnI	CCSGG	2 cut(s)	1083, 1084
BcoDI	GTCTC	2 cut(s)	300, 870
BfaI	CTAG	4 cut(s)	381, 468, 755, 782
BfoI	RGCGCY	1 cut(s)	782
BfuAI	ACCTGC	1 cut(s)	408
BisI	GCNGC	7 cut(s)	162, 583, 723, 752, 792, 1052, 1059
BlsI	GCNGC	7 cut(s)	163, 584, 724, 753, 793, 1053, 1060
Bme1390I	CCNGG	2 cut(s)	1083, 1084
Bme18I	GGWCC	1 cut(s)	833
BmeT110I	CYCGRG	1 cut(s)	1082
BmgT120I	GGNCC	4 cut(s)	456, 457, 816, 833
BmiI	GGNNCC	3 cut(s)	121, 457, 458
BmrFI	CCNGG	2 cut(s)	1083, 1084
BmrI	ACTGGG	1 cut(s)	90
BmsI	GCATC	1 cut(s)	75
BmtI	GCTAGC	2 cut(s)	471, 785
BmuI	ACTGGG	1 cut(s)	90
Bpu14I	TTCGAA	1 cut(s)	195
BpuMI	CCSGG	2 cut(s)	1083, 1084
BsaAI	YACGTR	1 cut(s)	557
BsaBI	GATNNNNATC	2 cut(s)	917, 944
BsaJI	CCNNGG	3 cut(s)	54, 829, 1082
BsaWI	WCCGGW	1 cut(s)	1024
Bsc4I	CCNNNNNNNGG	3 cut(s)	264, 478, 972
Bse118I	RCCGGY	1 cut(s)	575
Bse1I	ACTGG	2 cut(s)	85, 554
Bse8I	GATNNNNATC	2 cut(s)	917, 944
BseDI	CCNNGG	3 cut(s)	54, 829, 1082
BseGI	GGATG	1 cut(s)	90
BseJI	GATNNNNATC	2 cut(s)	917, 944
BseLI	CCNNNNNNNGG	3 cut(s)	264, 478, 972
BseMII	CTCAG	1 cut(s)	837
BseNI	ACTGG	2 cut(s)	85, 554
BseSI	GKGCMC	1 cut(s)	460
BseXI	GCAGC	6 cut(s)	148, 569, 763, 778, 1038, 1070
BseYI	CCCAGC	1 cut(s)	931
BsgI	GTGCAG	1 cut(s)	86
BshFI	GGCC	7 cut(s)	53, 143, 300, 458, 575, 702, 818
BsiHKAI	GWGCWC	1 cut(s)	369
BsiHKCI	CYCGRG	1 cut(s)	1082
BsiSI	CCGG	3 cut(s)	576, 1025, 1083
BslI	CCNNNNNNNGG	3 cut(s)	264, 478, 972
BsmAI	GTCTC	2 cut(s)	300, 870
BsnI	GGCC	7 cut(s)	53, 143, 300, 458, 575, 702, 818
BsoBI	CYCGRG	1 cut(s)	1082
Bsp119I	TTCGAA	1 cut(s)	195
Bsp120I	GGGCCC	1 cut(s)	456
Bsp1286I	GDGCHC	2 cut(s)	369, 460
Bsp143I	GATC	2 cut(s)	267, 945
Bsp19I	CCATGG	1 cut(s)	54
BspACI	CCGC	2 cut(s)	722, 1056
BspANI	GGCC	7 cut(s)	53, 143, 300, 458, 575, 702, 818
BspCNI	CTCAG	1 cut(s)	836
BspLI	GGNNCC	3 cut(s)	121, 457, 458
BspMI	ACCTGC	1 cut(s)	408
BspOI	GCTAGC	2 cut(s)	471, 785
BspPI	GGATC	1 cut(s)	275
BspT104I	TTCGAA	1 cut(s)	195
BsrFI	RCCGGY	1 cut(s)	575
BsrI	ACTGG	2 cut(s)	85, 554
BssAI	RCCGGY	1 cut(s)	575
BssECI	CCNNGG	3 cut(s)	54, 829, 1082
BssMI	GATC	2 cut(s)	267, 945
BssT1I	CCWWGG	2 cut(s)	54, 829
Bst4CI	ACNGT	2 cut(s)	149, 529
Bst6I	CTCTTC	1 cut(s)	903
BstBAI	YACGTR	1 cut(s)	557
BstBI	TTCGAA	1 cut(s)	195
BstC8I	GCNNGC	7 cut(s)	51, 415, 469, 503, 615, 783, 1056
BstDEI	CTNAG	1 cut(s)	823
BstDSI	CCRYGG	1 cut(s)	54
BstENI	CCTNNNNNAGG	1 cut(s)	476
BstF5I	GGATG	1 cut(s)	90
BstH2I	RGCGCY	1 cut(s)	782
BstHHI	GCGC	2 cut(s)	501, 781
BstKTI	GATC	2 cut(s)	270, 948
BstMAI	GTCTC	2 cut(s)	300, 870
BstMBI	GATC	2 cut(s)	267, 945
BstMWI	GCNNNNNNNGC	5 cut(s)	140, 182, 464, 507, 791
BstSCI	CCNGG	2 cut(s)	1081, 1082
BstSLI	GKGCMC	1 cut(s)	460
BstV1I	GCAGC	6 cut(s)	148, 569, 763, 778, 1038, 1070
BstXI	CCANNNNNNTGG	1 cut(s)	61
BsuRI	GGCC	7 cut(s)	53, 143, 300, 458, 575, 702, 818
BtgI	CCRYGG	1 cut(s)	54
BtgZI	GCGATG	1 cut(s)	293
BtsCI	GGATG	1 cut(s)	90
BtsI	GCAGTG	2 cut(s)	208, 462
BtsIMutI	CAGTG	4 cut(s)	208, 462, 525, 547
BveI	ACCTGC	1 cut(s)	408
Cac8I	GCNNGC	7 cut(s)	51, 415, 469, 503, 615, 783, 1056
CfoI	GCGC	2 cut(s)	501, 781
Cfr10I	RCCGGY	1 cut(s)	575
Cfr13I	GGNCC	4 cut(s)	456, 457, 816, 833
Cfr9I	CCCGGG	1 cut(s)	1082
Csp6I	GTAC	1 cut(s)	961
CviAII	CATG	8 cut(s)	55, 139, 568, 600, 813, 850, 937, 949
CviQI	GTAC	1 cut(s)	961
DdeI	CTNAG	1 cut(s)	823
DpnI	GATC	2 cut(s)	269, 947
DpnII	GATC	2 cut(s)	267, 945
EaeI	YGGCCR	2 cut(s)	51, 573
Eam1104I	CTCTTC	1 cut(s)	903
EarI	CTCTTC	1 cut(s)	903
Eco130I	CCWWGG	2 cut(s)	54, 829
Eco147I	AGGCCT	1 cut(s)	702
Eco24I	GRGCYC	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	833
Eco47III	AGCGCT	1 cut(s)	780
Eco72I	CACGTG	1 cut(s)	557
Eco88I	CYCGRG	1 cut(s)	1082
EcoNI	CCTNNNNNAGG	1 cut(s)	476
EcoO109I	RGGNCCY	3 cut(s)	456, 457, 833
EcoT14I	CCWWGG	2 cut(s)	54, 829
EcoT38I	GRGCYC	1 cut(s)	460
ErhI	CCWWGG	2 cut(s)	54, 829
FaeI	CATG	8 cut(s)	58, 142, 571, 603, 816, 853, 940, 952
FatI	CATG	8 cut(s)	54, 138, 567, 599, 812, 849, 936, 948
FauI	CCCGC	1 cut(s)	1063
FauNDI	CATATG	2 cut(s)	322, 495
FbaI	TGATCA	1 cut(s)	945
Fnu4HI	GCNGC	7 cut(s)	162, 583, 723, 752, 792, 1052, 1059
FokI	GGATG	1 cut(s)	97
FriOI	GRGCYC	1 cut(s)	460
Fsp4HI	GCNGC	7 cut(s)	162, 583, 723, 752, 792, 1052, 1059
FspBI	CTAG	4 cut(s)	381, 468, 755, 782
GlaI	GCGC	2 cut(s)	500, 780
GluI	GCNGC	7 cut(s)	162, 583, 723, 752, 792, 1052, 1059
GsaI	CCCAGC	1 cut(s)	935
HaeII	RGCGCY	1 cut(s)	782
HaeIII	GGCC	7 cut(s)	53, 143, 300, 458, 575, 702, 818
HapII	CCGG	3 cut(s)	576, 1025, 1083
HhaI	GCGC	2 cut(s)	501, 781
Hin1II	CATG	8 cut(s)	58, 142, 571, 603, 816, 853, 940, 952
Hin6I	GCGC	2 cut(s)	499, 779
HinP1I	GCGC	2 cut(s)	499, 779
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HinfI	GANTC	2 cut(s)	918, 940
HpaII	CCGG	3 cut(s)	576, 1025, 1083
HphI	GGTGA	3 cut(s)	70, 1058, 1071
Hpy166II	GTNNAC	1 cut(s)	532
Hpy188I	TCNGA	6 cut(s)	40, 305, 351, 923, 945, 1018
Hpy188III	TCNNGA	2 cut(s)	424, 774
Hpy8I	GTNNAC	1 cut(s)	532
HpyAV	CCTTC	3 cut(s)	133, 196, 976
HpyCH4III	ACNGT	2 cut(s)	149, 529
HpyCH4IV	ACGT	4 cut(s)	359, 556, 665, 797
HpyF10VI	GCNNNNNNNGC	5 cut(s)	140, 182, 464, 507, 791
HpyF3I	CTNAG	1 cut(s)	823
HpySE526I	ACGT	4 cut(s)	359, 556, 665, 797
Hsp92II	CATG	8 cut(s)	58, 142, 571, 603, 816, 853, 940, 952
HspAI	GCGC	2 cut(s)	499, 779
Ksp22I	TGATCA	1 cut(s)	945
Kzo9I	GATC	2 cut(s)	267, 945
LmnI	GCTCC	3 cut(s)	181, 776, 1027
Lsp1109I	GCAGC	6 cut(s)	148, 569, 763, 778, 1038, 1070
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	4 cut(s)	381, 468, 755, 782
MaeII	ACGT	4 cut(s)	359, 556, 665, 797
MaeIII	GTNAC	2 cut(s)	76, 757
MalI	GATC	2 cut(s)	269, 947
MboI	GATC	2 cut(s)	267, 945
MboII	GAAGA	1 cut(s)	920
MfeI	CAATTG	1 cut(s)	89
MhlI	GDGCHC	2 cut(s)	369, 460
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	9 cut(s)	89, 345, 392, 438, 620, 745, 765, 807, 870
MluNI	TGGCCA	1 cut(s)	53
MnlI	CCTC	7 cut(s)	109, 311, 347, 470, 726, 846, 855
Mox20I	TGGCCA	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	5 cut(s)	30, 207, 260, 344, 806
MslI	CAYNNNNRTG	3 cut(s)	59, 566, 1084
Msp20I	TGGCCA	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	791
MspI	CCGG	3 cut(s)	576, 1025, 1083
MspR9I	CCNGG	2 cut(s)	1083, 1084
MunI	CAATTG	1 cut(s)	89
MwoI	GCNNNNNNNGC	5 cut(s)	140, 182, 464, 507, 791
NciI	CCSGG	2 cut(s)	1083, 1084
NcoI	CCATGG	1 cut(s)	54
NdeI	CATATG	2 cut(s)	322, 495
NdeII	GATC	2 cut(s)	267, 945
NheI	GCTAGC	2 cut(s)	467, 781
NlaIII	CATG	8 cut(s)	58, 142, 571, 603, 816, 853, 940, 952
NlaIV	GGNNCC	3 cut(s)	121, 457, 458
NspV	TTCGAA	1 cut(s)	195
OliI	CACNNNNGTG	1 cut(s)	1084
PceI	AGGCCT	1 cut(s)	702
PfeI	GAWTC	2 cut(s)	918, 940
PkrI	GCNGC	7 cut(s)	163, 584, 724, 753, 793, 1053, 1060
PmaCI	CACGTG	1 cut(s)	557
PmlI	CACGTG	1 cut(s)	557
Ppu21I	YACGTR	1 cut(s)	557
PpuMI	RGGWCCY	1 cut(s)	833
Psp1406I	AACGTT	2 cut(s)	359, 797
Psp5II	RGGWCCY	1 cut(s)	833
PspCI	CACGTG	1 cut(s)	557
PspFI	CCCAGC	1 cut(s)	931
PspN4I	GGNNCC	3 cut(s)	121, 457, 458
PspOMI	GGGCCC	1 cut(s)	456
PspPI	GGNCC	4 cut(s)	456, 457, 816, 833
PspPPI	RGGWCCY	1 cut(s)	833
PvuII	CAGCTG	1 cut(s)	791
RsaI	GTAC	1 cut(s)	962
RsaNI	GTAC	1 cut(s)	961
RseI	CAYNNNNRTG	3 cut(s)	59, 566, 1084
SaqAI	TTAA	5 cut(s)	30, 207, 260, 344, 806
SatI	GCNGC	7 cut(s)	162, 583, 723, 752, 792, 1052, 1059
Sau3AI	GATC	2 cut(s)	267, 945
Sau96I	GGNCC	4 cut(s)	456, 457, 816, 833
ScrFI	CCNGG	2 cut(s)	1083, 1084
SduI	GDGCHC	2 cut(s)	369, 460
SfaNI	GCATC	1 cut(s)	75
SfuI	TTCGAA	1 cut(s)	195
SinI	GGWCC	1 cut(s)	833
SmaI	CCCGGG	1 cut(s)	1084
SmiMI	CAYNNNNRTG	3 cut(s)	59, 566, 1084
Sse9I	AATT	9 cut(s)	89, 345, 392, 438, 620, 745, 765, 807, 870
SseBI	AGGCCT	1 cut(s)	702
SsiI	CCGC	2 cut(s)	722, 1056
SspI	AATATT	2 cut(s)	633, 647
SspMI	CTAG	4 cut(s)	381, 468, 755, 782
StuI	AGGCCT	1 cut(s)	702
StyD4I	CCNGG	2 cut(s)	1081, 1082
StyI	CCWWGG	2 cut(s)	54, 829
TaaI	ACNGT	2 cut(s)	149, 529
TaiI	ACGT	4 cut(s)	362, 559, 668, 800
TaqI	TCGA	2 cut(s)	195, 711
TasI	AATT	9 cut(s)	89, 345, 392, 438, 620, 745, 765, 807, 870
TatI	WGTACW	1 cut(s)	960
TauI	GCSGC	1 cut(s)	725
TfiI	GAWTC	2 cut(s)	918, 940
Tru1I	TTAA	5 cut(s)	30, 207, 260, 344, 806
Tru9I	TTAA	5 cut(s)	30, 207, 260, 344, 806
TscAI	CASTG	4 cut(s)	208, 469, 532, 554
TseI	GCWGC	6 cut(s)	161, 582, 751, 791, 1051, 1058
TspDTI	ATGAA	5 cut(s)	115, 482, 595, 801, 1007
TspMI	CCCGGG	1 cut(s)	1082
TspRI	CASTG	4 cut(s)	208, 469, 532, 554
VpaK11BI	GGWCC	1 cut(s)	833
XagI	CCTNNNNNAGG	1 cut(s)	476
XapI	RAATTY	1 cut(s)	745
XcmI	CCANNNNNNNNNTGG	1 cut(s)	645
XmaI	CCCGGG	1 cut(s)	1082
XspI	CTAG	4 cut(s)	381, 468, 755, 782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.