Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006419

Physical Location & Seq

Genomic Coordinates Forward (+)

894488 .. 896854

Gene Structure 2367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00277540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGTCGCAGCTAGTTTTAGCTATGGTGATGGTACAGATGTTTGTAGCAGGGATGAACTTGCTTTCGAAAGAGATTCTGAGATCAAGGAACAGAAGTTAAGTTGGTTAGTTTGGTTCTGGCTATTTGTCAATGCCTTGACTGGAATAACAGCAGCAATGGCATTGTTTTACTATGGCCTCCGAGACACCACGGCTACATATGCTGCCAACTTCCTCAACTTAATTCCCATAGCCACCTTTCTCCTCTCCACCATCACAGGAATAGAGAAACTGAATCTGAAAACAAGAGCAGGGAAGATTAAGTGTCTGGGGGTGACAGTATGTGTTGCGGGAGCCGTATCTACTAGCCTTTACAAGGGAGAAGCATTTTATTTGGTTCATCACAGTAACAATCACCTGTACATAACTGTTGATACATCTTATGCTCATTGGGCTCGTGGCACTATCATGCTCTTTTGTAGCTGCTTCTCCTATTCTACGTGGTTCATAGCGCAGGTTAAATTGCTCAAAATATTTCCACTGAAATATTGGGCAACAATGTTAATGTGTATCATGGCAGCCCTTCAATCAACAGTCATAGGCTTATGTTTAGACACAAGTACAGCTTCGTGGAGAATAGGGTGGAATCTGCAACTAGTTACTATACTTTATTCGGGAGCACTAGCAACAGCTGCAACATTCTGCTTACTTTCATGGGCAATCTCAGCCCAAGGACCTCTCTATCCTCCTATGTTCAATCCATTGTCTCTCATTTTTGTGGCAATATCAGGAGCTCTCATACTCGGTGAAGAGATTAGAATGGGAACCTTGTTGGGCATGGTTATGATCATACTTGGGTTGTACTCGTTTTTGTGGGGTAAACGGAAGGAGACGAAAAGTGCATCTTTGCCGGAACAAGCAAAAACAAATGCTGAGCTCACAGGGTCTCAGTTGACAGCTGCAGTTGTGCCGACTACTTCACCAGATAACTGTCAACTCTGCACTGATAGCATTTCTGTTGATGTTGAAGATGGTTTAAAAACCACAGAAAATCCAAGAGGGCTTGATAATAAGCGAAGAACTATGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

356

Amino Acids

39.17

Weight (kDa)

7.98

Isoelectric Point (pI)

27.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	32 - 101	1.6e-07	EamA-like transporter family
EamA	PF00892	146 - 282	1e-09	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006419)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100
malus_domestica	MD01G1230200.v1.1
prunus_persica	Prupe.2G320900_v2.0.a1 Prupe.2G320900_v2.0.a1 Prupe.2G320900_v2.0.a1 Prupe.2G320900_v2.0.a1 Prupe.2G320900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0383151
rosa_laevigata	RLG00000026126
rosa_multiflora	Rmu_sc0008563.1_g000007
rosa_roxburghii	Rroxscaffold_4G00277540
rosa_rugosa	Rorug01G0439200 Rorug01G0439200 Rorug01G0439200 Rorug01G0439200
rosa_samantha	Rh1AG464800 Rh1BG422100 Rh1CG435400 Rh1DG454800
rosa_wichuraiana	Rw1G040760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	484
AciI	CCGC	1 cut(s)	329
AfaI	GTAC	4 cut(s)	34, 401, 601, 842
AfiI	CCNNNNNNNGG	1 cut(s)	355
AgsI	TTSAA	3 cut(s)	566, 736, 1007
AhlI	ACTAGT	1 cut(s)	634
AluBI	AGCT	8 cut(s)	11, 21, 462, 605, 671, 773, 916, 938
AluI	AGCT	8 cut(s)	11, 21, 462, 605, 671, 773, 916, 938
Alw21I	GWGCWC	3 cut(s)	661, 775, 918
Alw26I	GTCTC	4 cut(s)	177, 750, 863, 930
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	7 cut(s)	8, 152, 203, 462, 557, 671, 938
AspLEI	GCGC	1 cut(s)	493
AspS9I	GGNCC	1 cut(s)	713
AsuHPI	GGTGA	5 cut(s)	38, 325, 386, 797, 951
AsuII	TTCGAA	1 cut(s)	66
AvaII	GGWCC	1 cut(s)	713
BaeI	ACNNNNGTAYC	2 cut(s)	24, 57
BanII	GRGCYC	3 cut(s)	436, 775, 918
BauI	CACGAG	1 cut(s)	435
Bbv12I	GWGCWC	3 cut(s)	661, 775, 918
BbvI	GCAGC	7 cut(s)	20, 164, 190, 449, 569, 658, 925
BccI	CCATC	3 cut(s)	23, 260, 1004
BceAI	ACGGC	2 cut(s)	207, 320
BclI	TGATCA	1 cut(s)	825
BcoDI	GTCTC	4 cut(s)	177, 750, 863, 930
BcuI	ACTAGT	1 cut(s)	634
BfaI	CTAG	4 cut(s)	12, 345, 635, 662
BfmI	CTRYAG	1 cut(s)	939
BfuAI	ACCTGC	1 cut(s)	484
BisI	GCNGC	7 cut(s)	9, 153, 204, 463, 558, 672, 939
BlpI	GCTNAGC	1 cut(s)	912
BlsI	GCNGC	7 cut(s)	10, 154, 205, 464, 559, 673, 940
Bme18I	GGWCC	1 cut(s)	713
BmgT120I	GGNCC	1 cut(s)	713
BmiI	GGNNCC	2 cut(s)	334, 805
BmsI	GCATC	1 cut(s)	890
Bpu1102I	GCTNAGC	1 cut(s)	912
Bpu14I	TTCGAA	1 cut(s)	66
BsaAI	YACGTR	1 cut(s)	480
BsaI	GGTCTC	1 cut(s)	930
BsaJI	CCNNGG	2 cut(s)	189, 709
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse1I	ACTGG	1 cut(s)	145
Bse3DI	GCAATG	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	189, 709
BseGI	GGATG	1 cut(s)	58
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMI	GCAATG	1 cut(s)	162
BseMII	CTCAG	4 cut(s)	69, 717, 903, 941
BseNI	ACTGG	1 cut(s)	145
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	7 cut(s)	20, 164, 190, 449, 569, 658, 925
BsgI	GTGCAG	1 cut(s)	964
BshFI	GGCC	1 cut(s)	177
BsiHKAI	GWGCWC	3 cut(s)	661, 775, 918
BsiSI	CCGG	1 cut(s)	890
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmAI	GTCTC	4 cut(s)	177, 750, 863, 930
BsmBI	CGTCTC	1 cut(s)	863
BsnI	GGCC	1 cut(s)	177
Bso31I	GGTCTC	1 cut(s)	930
Bsp119I	TTCGAA	1 cut(s)	66
Bsp1286I	GDGCHC	4 cut(s)	436, 661, 775, 918
Bsp1407I	TGTACA	1 cut(s)	399
Bsp143I	GATC	2 cut(s)	81, 825
Bsp1720I	GCTNAGC	1 cut(s)	912
BspACI	CCGC	1 cut(s)	329
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	4 cut(s)	70, 716, 904, 940
BspLI	GGNNCC	2 cut(s)	334, 805
BspMAI	CTGCAG	1 cut(s)	943
BspMI	ACCTGC	1 cut(s)	484
BspT104I	TTCGAA	1 cut(s)	66
BspTNI	GGTCTC	1 cut(s)	930
BsrDI	GCAATG	1 cut(s)	162
BsrGI	TGTACA	1 cut(s)	399
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	2 cut(s)	189, 709
BssMI	GATC	2 cut(s)	81, 825
BssSI	CACGAG	1 cut(s)	435
BssT1I	CCWWGG	1 cut(s)	709
Bst2BI	CACGAG	1 cut(s)	435
Bst4CI	ACNGT	5 cut(s)	319, 386, 409, 574, 971
Bst6I	CTCTTC	1 cut(s)	783
BstAPI	GCANNNNNTGC	1 cut(s)	671
BstAUI	TGTACA	1 cut(s)	399
BstBAI	YACGTR	1 cut(s)	480
BstBI	TTCGAA	1 cut(s)	66
BstDEI	CTNAG	4 cut(s)	78, 703, 912, 927
BstDSI	CCRYGG	1 cut(s)	189
BstENI	CCTNNNNNAGG	1 cut(s)	353
BstF5I	GGATG	1 cut(s)	58
BstHHI	GCGC	1 cut(s)	493
BstKTI	GATC	2 cut(s)	84, 828
BstMAI	GTCTC	4 cut(s)	177, 750, 863, 930
BstMBI	GATC	2 cut(s)	81, 825
BstMWI	GCNNNNNNNGC	6 cut(s)	158, 200, 431, 671, 704, 987
BstSFI	CTRYAG	1 cut(s)	939
BstV1I	GCAGC	7 cut(s)	20, 164, 190, 449, 569, 658, 925
BsuRI	GGCC	1 cut(s)	177
BtgI	CCRYGG	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	58
BtsIMutI	CAGTG	2 cut(s)	518, 981
BveI	ACCTGC	1 cut(s)	484
CfoI	GCGC	1 cut(s)	493
Cfr13I	GGNCC	1 cut(s)	713
Csp6I	GTAC	4 cut(s)	33, 400, 600, 841
CviAII	CATG	4 cut(s)	448, 553, 693, 817
CviQI	GTAC	4 cut(s)	33, 400, 600, 841
DdeI	CTNAG	4 cut(s)	78, 703, 912, 927
DpnI	GATC	2 cut(s)	83, 827
DpnII	GATC	2 cut(s)	81, 825
DraI	TTTAAA	1 cut(s)	1017
Eam1104I	CTCTTC	1 cut(s)	783
EarI	CTCTTC	1 cut(s)	783
Ecl136II	GAGCTC	2 cut(s)	773, 916
Eco130I	CCWWGG	1 cut(s)	709
Eco24I	GRGCYC	3 cut(s)	436, 775, 918
Eco31I	GGTCTC	1 cut(s)	930
Eco47I	GGWCC	1 cut(s)	713
Eco53kI	GAGCTC	2 cut(s)	773, 916
EcoICRI	GAGCTC	2 cut(s)	773, 916
EcoNI	CCTNNNNNAGG	1 cut(s)	353
EcoO109I	RGGNCCY	1 cut(s)	713
EcoT14I	CCWWGG	1 cut(s)	709
EcoT38I	GRGCYC	3 cut(s)	436, 775, 918
ErhI	CCWWGG	1 cut(s)	709
Esp3I	CGTCTC	1 cut(s)	863
FaeI	CATG	4 cut(s)	451, 556, 696, 820
FalI	AAGNNNNNCTT	4 cut(s)	589, 621, 868, 900
FatI	CATG	4 cut(s)	447, 552, 692, 816
FauI	CCCGC	1 cut(s)	322
FauNDI	CATATG	1 cut(s)	199
FbaI	TGATCA	1 cut(s)	825
Fnu4HI	GCNGC	7 cut(s)	9, 153, 204, 463, 558, 672, 939
FokI	GGATG	1 cut(s)	65
FriOI	GRGCYC	3 cut(s)	436, 775, 918
Fsp4HI	GCNGC	7 cut(s)	9, 153, 204, 463, 558, 672, 939
FspBI	CTAG	4 cut(s)	12, 345, 635, 662
GlaI	GCGC	1 cut(s)	492
GluI	GCNGC	7 cut(s)	9, 153, 204, 463, 558, 672, 939
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	1 cut(s)	890
HhaI	GCGC	1 cut(s)	493
Hin1II	CATG	4 cut(s)	451, 556, 696, 820
Hin6I	GCGC	1 cut(s)	491
HinP1I	GCGC	1 cut(s)	491
HincII	GTYRAC	2 cut(s)	933, 974
HindII	GTYRAC	2 cut(s)	933, 974
HinfI	GANTC	3 cut(s)	74, 274, 625
HpaII	CCGG	1 cut(s)	890
HphI	GGTGA	5 cut(s)	38, 325, 386, 797, 951
Hpy166II	GTNNAC	3 cut(s)	860, 933, 974
Hpy188I	TCNGA	3 cut(s)	79, 182, 279
Hpy188III	TCNNGA	2 cut(s)	654, 768
Hpy8I	GTNNAC	3 cut(s)	860, 933, 974
HpyAV	CCTTC	2 cut(s)	572, 859
HpyCH4III	ACNGT	5 cut(s)	319, 386, 409, 574, 971
HpyCH4IV	ACGT	1 cut(s)	479
HpyCH4V	TGCA	5 cut(s)	631, 674, 881, 941, 981
HpyF10VI	GCNNNNNNNGC	6 cut(s)	158, 200, 431, 671, 704, 987
HpyF3I	CTNAG	4 cut(s)	78, 703, 912, 927
HpySE526I	ACGT	1 cut(s)	479
Hsp92II	CATG	4 cut(s)	451, 556, 696, 820
HspAI	GCGC	1 cut(s)	491
Ksp22I	TGATCA	1 cut(s)	825
Kzo9I	GATC	2 cut(s)	81, 825
LmnI	GCTCC	3 cut(s)	332, 656, 770
Lsp1109I	GCAGC	7 cut(s)	20, 164, 190, 449, 569, 658, 925
LweI	GCATC	1 cut(s)	890
MaeI	CTAG	4 cut(s)	12, 345, 635, 662
MaeII	ACGT	1 cut(s)	479
MaeIII	GTNAC	3 cut(s)	313, 386, 637
MalI	GATC	2 cut(s)	83, 827
MboI	GATC	2 cut(s)	81, 825
MboII	GAAGA	4 cut(s)	307, 800, 1019, 1068
MhlI	GDGCHC	4 cut(s)	436, 661, 775, 918
MluCI	AATT	2 cut(s)	222, 500
MnlI	CCTC	6 cut(s)	188, 224, 254, 726, 735, 1031
MseI	TTAA	6 cut(s)	98, 221, 300, 498, 542, 1016
MslI	CAYNNNNRTG	3 cut(s)	446, 755, 821
MspA1I	CMGCKG	2 cut(s)	671, 938
MspI	CCGG	1 cut(s)	890
MwoI	GCNNNNNNNGC	6 cut(s)	158, 200, 431, 671, 704, 987
NdeI	CATATG	1 cut(s)	199
NdeII	GATC	2 cut(s)	81, 825
NlaIII	CATG	4 cut(s)	451, 556, 696, 820
NlaIV	GGNNCC	2 cut(s)	334, 805
NmuCI	GTSAC	1 cut(s)	313
NspV	TTCGAA	1 cut(s)	66
PfeI	GAWTC	3 cut(s)	74, 274, 625
PkrI	GCNGC	7 cut(s)	10, 154, 205, 464, 559, 673, 940
Ppu21I	YACGTR	1 cut(s)	480
PpuMI	RGGWCCY	1 cut(s)	713
Psp124BI	GAGCTC	2 cut(s)	775, 918
Psp5II	RGGWCCY	1 cut(s)	713
PspN4I	GGNNCC	2 cut(s)	334, 805
PspPI	GGNCC	1 cut(s)	713
PspPPI	RGGWCCY	1 cut(s)	713
PstI	CTGCAG	1 cut(s)	943
PvuII	CAGCTG	2 cut(s)	671, 938
RsaI	GTAC	4 cut(s)	34, 401, 601, 842
RsaNI	GTAC	4 cut(s)	33, 400, 600, 841
RseI	CAYNNNNRTG	3 cut(s)	446, 755, 821
SacI	GAGCTC	2 cut(s)	775, 918
SaqAI	TTAA	6 cut(s)	98, 221, 300, 498, 542, 1016
SatI	GCNGC	7 cut(s)	9, 153, 204, 463, 558, 672, 939
Sau3AI	GATC	2 cut(s)	81, 825
Sau96I	GGNCC	1 cut(s)	713
SduI	GDGCHC	4 cut(s)	436, 661, 775, 918
SfaNI	GCATC	1 cut(s)	890
SfcI	CTRYAG	1 cut(s)	939
SfuI	TTCGAA	1 cut(s)	66
SinI	GGWCC	1 cut(s)	713
SmiMI	CAYNNNNRTG	3 cut(s)	446, 755, 821
SpeI	ACTAGT	1 cut(s)	634
Sse9I	AATT	2 cut(s)	222, 500
SsiI	CCGC	1 cut(s)	329
SspI	AATATT	2 cut(s)	513, 527
SspMI	CTAG	4 cut(s)	12, 345, 635, 662
SstI	GAGCTC	2 cut(s)	775, 918
StyI	CCWWGG	1 cut(s)	709
TaaI	ACNGT	5 cut(s)	319, 386, 409, 574, 971
TaiI	ACGT	1 cut(s)	482
TaqI	TCGA	1 cut(s)	66
TasI	AATT	2 cut(s)	222, 500
TatI	WGTACW	3 cut(s)	399, 599, 840
TfiI	GAWTC	3 cut(s)	74, 274, 625
Tru1I	TTAA	6 cut(s)	98, 221, 300, 498, 542, 1016
Tru9I	TTAA	6 cut(s)	98, 221, 300, 498, 542, 1016
TscAI	CASTG	2 cut(s)	525, 988
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	7 cut(s)	8, 152, 203, 462, 557, 671, 938
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	4 cut(s)	69, 368, 475, 681
TspGWI	ACGGA	1 cut(s)	877
TspRI	CASTG	2 cut(s)	525, 988
VpaK11BI	GGWCC	1 cut(s)	713
XagI	CCTNNNNNAGG	1 cut(s)	353
XcmI	CCANNNNNNNNNTGG	1 cut(s)	525
XspI	CTAG	4 cut(s)	12, 345, 635, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.