Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0006419

Physical Location & Seq

Genomic Coordinates Reverse (-)

31969257 .. 31971401

Gene Structure 2145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1230200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGAAATGGGGTTTGTGAAAAAATGGTTCAAGTGGTCACAGCTAGTGTTGGCCATGTTGATGGTGCAGATATTTGTGACAGGGATGCAATTGCTTTCCAAAGTTATACTGAGTGAAGGAACCTTCATTTTGGCACTCATCACGTACCGGCACATATTTGCCGCCATTTGTGTCGCCCCTTTCGCCTTCTTTCTTGAAAGAAAGAAAGAAAAAAAGTTAGGTTGGTGTGTTTGGTTCTGGCTCTTTGTCAATGCCTTAACTGGTATCACAATAGCAATGGGATTGTATTACTACGGCCTTCGGGACACCGCGCCTGCATATGCCACCAACTTCCTCAACTTAATTCCGGTAGCTACTTTCGTGCTCTCCATCGTAACCCGCATAGAGAAACTGAACCTGCAAACTAGGGCAGGCAAGATCAAGACTCTTGGGGTAATTGTATGCGTGGGAGGGGCCATAACTGCGAGCCTTTACAAGGGAAAAGCGTTTTATATGTGCCAGCACAGTAATCACCCTCATCGATACACTGTCAATACATCTGACGCTCATTGGACTCGCGGCACCTTCATGCTCGCGGGTAGCTGCCTGTCCTATTCTGCGTGGTTCATAGTCCAAGCTAGGTTTCTGAAATTATTCCCTTTGAAATATTGGGCAACAATGTTAATGTGCCTCACGGCAGCCGTGCAATCAACAGTCATAGGCTTATGTATGGACAGACGGGCAGCTTCATGGCGGTTAGGGTGGAATTTGCAACTCGGTACTATAATTTATTCGGGAGCACTAAACACAGCTGCAACATTCTGCTTACTTTCATGGGCCATCTCAGTCCAAGGACCTCTGTATCCTCCCATGTTCAACCCATTGTCTCTAATTTTGGTTGCCTTATCGTCAGCTCTCATACTCGGCGAAGAGATCAGAACCGGAACCTTGTTGGGGATGGTTATGATCATAGTTGGGCTGTACTCATTTTTGTGGGGTAAAAGAAAGGAGAGGAAAGCCTCAGCTTTGCCAGACTCACAAGCTCAGCCAGAACCGGCAAAAACAAACGATGAGCCGGCCGCCACAGGGTCACAATTGACAGCTGTTGTAATGCCGACTACTTCACCAGTTCACTATCACGGAGGTGGCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

378

Amino Acids

41.82

Weight (kDa)

9.66

Isoelectric Point (pI)

32.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	16 - 151	4.9e-11	EamA-like transporter family
EamA	PF00892	186 - 322	1.5e-09	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006419)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100 FvH4_7g33100
malus_domestica	MD01G1230200.v1.1
prunus_persica	Prupe.2G320900_v2.0.a1 Prupe.2G320900_v2.0.a1 Prupe.2G320900_v2.0.a1 Prupe.2G320900_v2.0.a1 Prupe.2G320900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0383151
rosa_laevigata	RLG00000026126
rosa_multiflora	Rmu_sc0008563.1_g000007
rosa_roxburghii	Rroxscaffold_4G00277540
rosa_rugosa	Rorug01G0439200 Rorug01G0439200 Rorug01G0439200 Rorug01G0439200
rosa_samantha	Rh1AG464800 Rh1BG422100 Rh1CG435400 Rh1DG454800
rosa_wichuraiana	Rw1G040760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	405
AccB1I	GGYRCC	1 cut(s)	560
AccII	CGCG	3 cut(s)	311, 558, 575
AciI	CCGC	7 cut(s)	162, 309, 379, 558, 575, 733, 1059
AcoI	YGGCCR	2 cut(s)	51, 1056
AcsI	RAATTY	1 cut(s)	745
AfaI	GTAC	3 cut(s)	146, 760, 962
AfiI	CCNNNNNNNGG	3 cut(s)	475, 933, 1065
AgsI	TTSAA	4 cut(s)	31, 197, 643, 856
AjuI	GAANNNNNNNTTGG	2 cut(s)	606, 638
AleI	CACNNNNGTG	1 cut(s)	1122
Alw21I	GWGCWC	2 cut(s)	366, 781
Alw26I	GTCTC	1 cut(s)	870
AoxI	GGCC	5 cut(s)	51, 295, 453, 816, 1056
ApeKI	GCWGC	4 cut(s)	582, 677, 722, 791
ApoI	RAATTY	1 cut(s)	745
Asp700I	GAANNNNTTC	1 cut(s)	632
AspLEI	GCGC	1 cut(s)	313
AspS9I	GGNCC	3 cut(s)	453, 816, 833
AsuHPI	GGTGA	2 cut(s)	503, 1095
AvaII	GGWCC	1 cut(s)	833
BaeI	ACNNNNGTAYC	2 cut(s)	824, 857
BalI	TGGCCA	1 cut(s)	53
BanI	GGYRCC	1 cut(s)	560
Bbv12I	GWGCWC	2 cut(s)	366, 781
BbvCI	CCTCAGC	1 cut(s)	1000
BbvI	GCAGC	4 cut(s)	569, 689, 734, 778
BccI	CCATC	4 cut(s)	55, 377, 827, 931
BceAI	ACGGC	3 cut(s)	310, 665, 690
BciVI	GTATCC	1 cut(s)	852
BclI	TGATCA	1 cut(s)	945
BcoDI	GTCTC	1 cut(s)	870
BfaI	CTAG	3 cut(s)	44, 405, 618
BfuAI	ACCTGC	1 cut(s)	405
BfuI	GTATCC	1 cut(s)	852
BisI	GCNGC	7 cut(s)	162, 559, 583, 678, 723, 792, 1059
BlpI	GCTNAGC	1 cut(s)	1023
BlsI	GCNGC	7 cut(s)	163, 560, 584, 679, 724, 793, 1060
Bme18I	GGWCC	1 cut(s)	833
BmgT120I	GGNCC	3 cut(s)	453, 816, 833
BmiI	GGNNCC	4 cut(s)	121, 454, 562, 925
BmsI	GCATC	1 cut(s)	75
Bpu10I	CCTNAGC	1 cut(s)	1000
Bpu1102I	GCTNAGC	1 cut(s)	1023
Bsa29I	ATCGAT	1 cut(s)	520
BsaAI	YACGTR	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	829
BsaWI	WCCGGW	2 cut(s)	346, 920
BsaXI	ACNNNNNCTCC	1 cut(s)	1113
Bsc4I	CCNNNNNNNGG	3 cut(s)	475, 933, 1065
Bse118I	RCCGGY	3 cut(s)	147, 1033, 1054
Bse1I	ACTGG	2 cut(s)	265, 1106
Bse3DI	GCAATG	1 cut(s)	282
BseCI	ATCGAT	1 cut(s)	520
BseDI	CCNNGG	1 cut(s)	829
BseGI	GGATG	2 cut(s)	90, 942
BseLI	CCNNNNNNNGG	3 cut(s)	475, 933, 1065
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	4 cut(s)	101, 837, 1014, 1037
BseNI	ACTGG	2 cut(s)	265, 1106
BseX3I	CGGCCG	1 cut(s)	1056
BseXI	GCAGC	4 cut(s)	569, 689, 734, 778
BsgI	GTGCAG	1 cut(s)	86
Bsh1236I	CGCG	3 cut(s)	311, 558, 575
Bsh1285I	CGRYCG	1 cut(s)	1059
BshFI	GGCC	5 cut(s)	53, 297, 455, 818, 1058
BshNI	GGYRCC	1 cut(s)	560
BshVI	ATCGAT	1 cut(s)	520
BsiEI	CGRYCG	1 cut(s)	1059
BsiHKAI	GWGCWC	2 cut(s)	366, 781
BsiSI	CCGG	5 cut(s)	148, 347, 921, 1034, 1055
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	3 cut(s)	475, 933, 1065
BsmAI	GTCTC	1 cut(s)	870
BsmFI	GGGAC	1 cut(s)	317
BsnI	GGCC	5 cut(s)	53, 297, 455, 818, 1058
Bsp1286I	GDGCHC	2 cut(s)	366, 781
Bsp143I	GATC	3 cut(s)	417, 912, 945
Bsp1720I	GCTNAGC	1 cut(s)	1023
BspACI	CCGC	7 cut(s)	162, 309, 379, 558, 575, 733, 1059
BspANI	GGCC	5 cut(s)	53, 297, 455, 818, 1058
BspCNI	CTCAG	4 cut(s)	102, 836, 1013, 1036
BspDI	ATCGAT	1 cut(s)	520
BspFNI	CGCG	3 cut(s)	311, 558, 575
BspLI	GGNNCC	4 cut(s)	121, 454, 562, 925
BspMI	ACCTGC	1 cut(s)	405
BspT107I	GGYRCC	1 cut(s)	560
BsrDI	GCAATG	1 cut(s)	282
BsrFI	RCCGGY	3 cut(s)	147, 1033, 1054
BsrI	ACTGG	2 cut(s)	265, 1106
BssAI	RCCGGY	3 cut(s)	147, 1033, 1054
BssECI	CCNNGG	1 cut(s)	829
BssMI	GATC	3 cut(s)	417, 912, 945
BssT1I	CCWWGG	1 cut(s)	829
Bst4CI	ACNGT	3 cut(s)	506, 529, 694
Bst6I	CTCTTC	1 cut(s)	903
BstBAI	YACGTR	1 cut(s)	144
BstC8I	GCNNGC	6 cut(s)	315, 412, 466, 500, 573, 1056
BstDEI	CTNAG	4 cut(s)	110, 823, 1000, 1023
BstENI	CCTNNNNNAGG	1 cut(s)	473
BstF5I	GGATG	2 cut(s)	90, 942
BstFNI	CGCG	3 cut(s)	311, 558, 575
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	3 cut(s)	420, 915, 948
BstMAI	GTCTC	1 cut(s)	870
BstMBI	GATC	3 cut(s)	417, 912, 945
BstMCI	CGRYCG	1 cut(s)	1059
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 461
BstUI	CGCG	3 cut(s)	311, 558, 575
BstV1I	GCAGC	4 cut(s)	569, 689, 734, 778
BstXI	CCANNNNNNTGG	1 cut(s)	61
BstZI	CGGCCG	1 cut(s)	1056
Bsu15I	ATCGAT	1 cut(s)	520
BsuI	GTATCC	1 cut(s)	852
BsuRI	GGCC	5 cut(s)	53, 297, 455, 818, 1058
BsuTUI	ATCGAT	1 cut(s)	520
BtsCI	GGATG	2 cut(s)	90, 942
BtsIMutI	CAGTG	1 cut(s)	525
BveI	ACCTGC	1 cut(s)	405
Cac8I	GCNNGC	6 cut(s)	315, 412, 466, 500, 573, 1056
CfoI	GCGC	1 cut(s)	313
Cfr10I	RCCGGY	3 cut(s)	147, 1033, 1054
Cfr13I	GGNCC	3 cut(s)	453, 816, 833
ClaI	ATCGAT	1 cut(s)	520
CseI	GACGC	1 cut(s)	551
Csp6I	GTAC	3 cut(s)	145, 759, 961
CviAII	CATG	5 cut(s)	55, 568, 729, 813, 850
CviQI	GTAC	3 cut(s)	145, 759, 961
DdeI	CTNAG	4 cut(s)	110, 823, 1000, 1023
DpnI	GATC	3 cut(s)	419, 914, 947
DpnII	GATC	3 cut(s)	417, 912, 945
EaeI	YGGCCR	2 cut(s)	51, 1056
EagI	CGGCCG	1 cut(s)	1056
Eam1104I	CTCTTC	1 cut(s)	903
EarI	CTCTTC	1 cut(s)	903
EclXI	CGGCCG	1 cut(s)	1056
Eco130I	CCWWGG	1 cut(s)	829
Eco47I	GGWCC	1 cut(s)	833
Eco52I	CGGCCG	1 cut(s)	1056
EcoNI	CCTNNNNNAGG	1 cut(s)	473
EcoO109I	RGGNCCY	1 cut(s)	833
EcoT14I	CCWWGG	1 cut(s)	829
ErhI	CCWWGG	1 cut(s)	829
FaeI	CATG	5 cut(s)	58, 571, 732, 816, 853
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	5 cut(s)	54, 567, 728, 812, 849
FauI	CCCGC	2 cut(s)	386, 568
FauNDI	CATATG	1 cut(s)	319
FbaI	TGATCA	1 cut(s)	945
Fnu4HI	GCNGC	7 cut(s)	162, 559, 583, 678, 723, 792, 1059
FokI	GGATG	2 cut(s)	97, 949
Fsp4HI	GCNGC	7 cut(s)	162, 559, 583, 678, 723, 792, 1059
FspBI	CTAG	3 cut(s)	44, 405, 618
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	7 cut(s)	162, 559, 583, 678, 723, 792, 1059
HaeIII	GGCC	5 cut(s)	53, 297, 455, 818, 1058
HapII	CCGG	5 cut(s)	148, 347, 921, 1034, 1055
HgaI	GACGC	1 cut(s)	551
HhaI	GCGC	1 cut(s)	313
Hin1II	CATG	5 cut(s)	58, 571, 732, 816, 853
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HinfI	GANTC	3 cut(s)	424, 553, 1013
HpaII	CCGG	5 cut(s)	148, 347, 921, 1034, 1055
HphI	GGTGA	2 cut(s)	503, 1095
Hpy166II	GTNNAC	1 cut(s)	1111
Hpy188I	TCNGA	3 cut(s)	541, 627, 917
Hpy188III	TCNNGA	4 cut(s)	194, 302, 421, 774
Hpy8I	GTNNAC	1 cut(s)	1111
HpyAV	CCTTC	5 cut(s)	110, 133, 196, 308, 574
HpyCH4III	ACNGT	3 cut(s)	506, 529, 694
HpyCH4IV	ACGT	1 cut(s)	143
HpyCH4V	TGCA	7 cut(s)	67, 88, 317, 400, 685, 751, 794
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 461
HpyF3I	CTNAG	4 cut(s)	110, 823, 1000, 1023
HpySE526I	ACGT	1 cut(s)	143
Hsp92II	CATG	5 cut(s)	58, 571, 732, 816, 853
HspAI	GCGC	1 cut(s)	311
KroI	GCCGGC	1 cut(s)	1054
KroNI	GCCGGC	1 cut(s)	1056
Ksp22I	TGATCA	1 cut(s)	945
Kzo9I	GATC	3 cut(s)	417, 912, 945
LmnI	GCTCC	1 cut(s)	776
Lsp1109I	GCAGC	4 cut(s)	569, 689, 734, 778
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	3 cut(s)	44, 405, 618
MaeII	ACGT	1 cut(s)	143
MaeIII	GTNAC	4 cut(s)	36, 76, 373, 1068
MalI	GATC	3 cut(s)	419, 914, 947
MboI	GATC	3 cut(s)	417, 912, 945
MboII	GAAGA	1 cut(s)	920
MfeI	CAATTG	2 cut(s)	89, 1073
MhlI	GDGCHC	2 cut(s)	366, 781
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	8 cut(s)	89, 342, 435, 629, 745, 765, 870, 1073
MluNI	TGGCCA	1 cut(s)	53
MlyI	GAGTC	3 cut(s)	418, 547, 1007
MnlI	CCTC	9 cut(s)	344, 443, 525, 680, 846, 855, 984, 1009, 1115
Mox20I	TGGCCA	1 cut(s)	53
MroNI	GCCGGC	1 cut(s)	1054
MroXI	GAANNNNTTC	1 cut(s)	632
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	3 cut(s)	257, 341, 662
MslI	CAYNNNNRTG	4 cut(s)	59, 566, 970, 1122
Msp20I	TGGCCA	1 cut(s)	53
MspA1I	CMGCKG	2 cut(s)	791, 1082
MspI	CCGG	5 cut(s)	148, 347, 921, 1034, 1055
MunI	CAATTG	2 cut(s)	89, 1073
MvnI	CGCG	3 cut(s)	311, 558, 575
MwoI	GCNNNNNNNGC	2 cut(s)	182, 461
NaeI	GCCGGC	1 cut(s)	1056
NdeI	CATATG	1 cut(s)	319
NdeII	GATC	3 cut(s)	417, 912, 945
NgoMIV	GCCGGC	1 cut(s)	1054
NlaIII	CATG	5 cut(s)	58, 571, 732, 816, 853
NlaIV	GGNNCC	4 cut(s)	121, 454, 562, 925
NmeAIII	GCCGAG	1 cut(s)	882
NmuCI	GTSAC	3 cut(s)	36, 76, 1068
OliI	CACNNNNGTG	1 cut(s)	1122
PcsI	WCGNNNNNNNCGW	1 cut(s)	1125
PdiI	GCCGGC	1 cut(s)	1056
PdmI	GAANNNNTTC	1 cut(s)	632
PkrI	GCNGC	7 cut(s)	163, 560, 584, 679, 724, 793, 1060
PleI	GAGTC	3 cut(s)	418, 547, 1007
PpsI	GAGTC	3 cut(s)	418, 547, 1007
Ppu21I	YACGTR	1 cut(s)	144
PpuMI	RGGWCCY	1 cut(s)	833
Psp5II	RGGWCCY	1 cut(s)	833
PspN4I	GGNNCC	4 cut(s)	121, 454, 562, 925
PspPI	GGNCC	3 cut(s)	453, 816, 833
PspPPI	RGGWCCY	1 cut(s)	833
PvuII	CAGCTG	2 cut(s)	791, 1082
RsaI	GTAC	3 cut(s)	146, 760, 962
RsaNI	GTAC	3 cut(s)	145, 759, 961
RseI	CAYNNNNRTG	4 cut(s)	59, 566, 970, 1122
SaqAI	TTAA	3 cut(s)	257, 341, 662
SatI	GCNGC	7 cut(s)	162, 559, 583, 678, 723, 792, 1059
Sau3AI	GATC	3 cut(s)	417, 912, 945
Sau96I	GGNCC	3 cut(s)	453, 816, 833
SchI	GAGTC	3 cut(s)	418, 547, 1007
SduI	GDGCHC	2 cut(s)	366, 781
SfaNI	GCATC	1 cut(s)	75
SinI	GGWCC	1 cut(s)	833
SmiMI	CAYNNNNRTG	4 cut(s)	59, 566, 970, 1122
Sse9I	AATT	8 cut(s)	89, 342, 435, 629, 745, 765, 870, 1073
SsiI	CCGC	7 cut(s)	162, 309, 379, 558, 575, 733, 1059
SspI	AATATT	1 cut(s)	647
SspMI	CTAG	3 cut(s)	44, 405, 618
StyI	CCWWGG	1 cut(s)	829
TaaI	ACNGT	3 cut(s)	506, 529, 694
TaiI	ACGT	1 cut(s)	146
TaqI	TCGA	1 cut(s)	520
TasI	AATT	8 cut(s)	89, 342, 435, 629, 745, 765, 870, 1073
TatI	WGTACW	1 cut(s)	960
TauI	GCSGC	3 cut(s)	164, 561, 1061
Tru1I	TTAA	3 cut(s)	257, 341, 662
Tru9I	TTAA	3 cut(s)	257, 341, 662
TscAI	CASTG	1 cut(s)	532
TseFI	GTSAC	3 cut(s)	36, 76, 1068
TseI	GCWGC	4 cut(s)	582, 677, 722, 791
Tsp45I	GTSAC	3 cut(s)	36, 76, 1068
TspDTI	ATGAA	5 cut(s)	115, 556, 595, 717, 801
TspGWI	ACGGA	1 cut(s)	1134
TspRI	CASTG	1 cut(s)	532
VpaK11BI	GGWCC	1 cut(s)	833
XagI	CCTNNNNNAGG	1 cut(s)	473
XapI	RAATTY	1 cut(s)	745
XmnI	GAANNNNTTC	1 cut(s)	632
XspI	CTAG	3 cut(s)	44, 405, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.